AT2G43890
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009066
Physical Location & Seq
Forward (+)
18176831 .. 18179178
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43890.1

Sequence Viewer

Length: 1179 bp
ATGGATAATAATAAGCTTGTAGCTGTTTTGCTGATGTTCTTTTCAAGTTTCTTGCTGATGAAATCATCAACGGCTGCTTCCAACTACAATGTTGTCAGCTTCGGTGCTAAACCGGACGGTCGAACCGACTCCACTAAAGCCTTCCTTGGCGCGTGGCAAGCAGCTTGCCGTTCAGCTGCAGCGGTTACTGTAACGGTCCCGAGAGGAAGCTTCTTGCTCAAACCGGTGGAGTTTCGAGGTCCATGCCGCAGTAGAATAACGTTTCAGATCTATGGAACGATTGTAGCTCCTTCGGATTACCGCGGTTTGGGAAATTCCGGTTATTGGATCTTGTTCGTGAAAGTTAACCGGATCTCAATCATTGGAGGAACTTTAGATGCTAGAGGTGCTTCTTTTTGGGCTTGTCGAAAATCCGGAAAGAGTTGCCCTGTTGGCGCCAGATCAATGACGTTTAACTGGGCAAACGACGTCGTAGTTAGTGGCTTAACGTCTATAAACAGTCAAACAACACATTTAGTGATAAACAGCTGCAACAATGTAATTGTCCGGAAAGTAAAGCTAGTGGCTCCAGACCAAAGTCCGAACACAGATGGCCTCCACGTCCAAGGTTCTGCTGGTGTTACCGTAACCGATGGCACTTTTCATACCGGAGATGATTGTATCTCTATTGGTCCAGGAACTCGTAACCTCTACATGTCTAAACTCAATTGCGGTCCAGGCCATGGAATCAGTATTGGGAGTTTAGGGAGAGATGCAAATGAAGCTGGAGTAGAGAACATAACGTTGATAAACTCTGTTTTTTCGGGCTCGGATAATGGTGTTCGGATCAAGACATGGGCTAGACAAAGTACAGGTTTTGTAAGAAACGTTTTGTTCCAGAATCTGATCATGAAAAATGTTCAGAATCCGATCATTGTCGATCAAAATTACTGCCCTAGTAATCAAGGTTGTCCTAAACAGGGTTCTGGAGTGAAGATTAGTCAGGTTGTGTATAGAAACATTCAAGGGACGTCGCGGACGCAACAGGCTTTAACGTTTGATTGCAGTCGCAGTAATCCGTGCCAAGCGATTAGATTGCATGATATTAAGCTAACGTTTAACGGTCGGTCCGCTACTTCGACTTGTAAGAATATTAAAGGAGTTAAGGCTGGTGTAGTGATGCCTCAAGGTTGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

392

Amino Acids

42.01

Weight (kDa)

9.78

Isoelectric Point (pI)

28.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 56 - 379 3e-88 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 471, 1013
AccB1I GGYRCC 1 cut(s) 434
AccB7I CCANNNNNTGG 1 cut(s) 722
AccII CGCG 3 cut(s) 152, 303, 1015
AccIII TCCGGA 2 cut(s) 413, 546
AciI CCGC 7 cut(s) 182, 247, 301, 303, 711, 1015, 1110
AclI AACGTT 5 cut(s) 260, 782, 867, 1034, 1094
AclWI GGATC 3 cut(s) 335, 359, 833
AcsI RAATTY 1 cut(s) 313
AcyI GRCGYC 3 cut(s) 435, 468, 1010
AfaI GTAC 1 cut(s) 850
AfiI CCNNNNNNNGG 4 cut(s) 307, 324, 722, 959
AflIII ACRYGT 1 cut(s) 693
AgeI ACCGGT 1 cut(s) 223
AgsI TTSAA 2 cut(s) 45, 1004
AjiI CACGTC 1 cut(s) 601
AjnI CCWGG 2 cut(s) 673, 715
AlwI GGATC 3 cut(s) 335, 359, 833
AlwNI CAGNNNCTG 1 cut(s) 883
Ama87I CYCGRG 1 cut(s) 199
Aor13HI TCCGGA 2 cut(s) 413, 546
AoxI GGCC 2 cut(s) 592, 718
ApeKI GCWGC 5 cut(s) 74, 161, 176, 179, 528
ApoI RAATTY 1 cut(s) 313
AsiGI ACCGGT 1 cut(s) 223
AspLEI GCGC 2 cut(s) 152, 437
AspS9I GGNCC 5 cut(s) 196, 239, 671, 713, 1107
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 5 cut(s) 196, 239, 671, 713, 1107
BanI GGYRCC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 809
BbvI GCAGC 5 cut(s) 61, 163, 173, 191, 515
BccI CCATC 2 cut(s) 584, 626
BceAI ACGGC 2 cut(s) 87, 153
BcgI CGANNNNNNTGC 4 cut(s) 225, 259, 1057, 1091
BciT130I CCWGG 2 cut(s) 675, 717
BclI TGATCA 1 cut(s) 885
BfaI CTAG 4 cut(s) 381, 560, 840, 936
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 438
BglI GCCNNNNNGGC 1 cut(s) 432
BglII AGATCT 1 cut(s) 267
BisI GCNGC 6 cut(s) 75, 162, 177, 180, 247, 529
BlsI GCNGC 6 cut(s) 76, 163, 178, 181, 248, 530
Bme1390I CCNGG 2 cut(s) 675, 717
Bme18I GGWCC 5 cut(s) 196, 239, 671, 713, 1107
BmeT110I CYCGRG 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 601
BmgT120I GGNCC 5 cut(s) 196, 239, 671, 713, 1107
BmiI GGNNCC 3 cut(s) 198, 436, 567
BmrFI CCNGG 2 cut(s) 675, 717
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 3 cut(s) 367, 742, 1149
BmuI ACTGGG 1 cut(s) 466
BoxI GACNNNNGTC 1 cut(s) 576
BpmI CTGGAG 3 cut(s) 552, 786, 987
BpuEI CTTGAG 1 cut(s) 1149
BsaBI GATNNNNATC 1 cut(s) 356
BsaHI GRCGYC 3 cut(s) 435, 468, 1010
BsaJI CCNNGG 4 cut(s) 145, 301, 604, 721
BsaWI WCCGGW 7 cut(s) 112, 223, 317, 348, 413, 546, 647
Bsc4I CCNNNNNNNGG 4 cut(s) 307, 324, 722, 959
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 461
Bse8I GATNNNNATC 1 cut(s) 356
BseAI TCCGGA 2 cut(s) 413, 546
BseBI CCWGG 2 cut(s) 675, 717
BseDI CCNNGG 4 cut(s) 145, 301, 604, 721
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 4 cut(s) 307, 324, 722, 959
BseNI ACTGG 1 cut(s) 461
BseXI GCAGC 5 cut(s) 61, 163, 173, 191, 515
Bsh1236I CGCG 3 cut(s) 152, 303, 1015
Bsh1285I CGRYCG 2 cut(s) 121, 1105
BshFI GGCC 2 cut(s) 594, 720
BshNI GGYRCC 1 cut(s) 434
BshTI ACCGGT 1 cut(s) 223
BsiEI CGRYCG 2 cut(s) 121, 1105
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 7 cut(s) 113, 224, 318, 349, 414, 547, 648
BslFI GGGAC 2 cut(s) 182, 1021
BslI CCNNNNNNNGG 4 cut(s) 307, 324, 722, 959
BsmFI GGGAC 2 cut(s) 182, 1021
BsnI GGCC 2 cut(s) 594, 720
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 809
Bsp13I TCCGGA 2 cut(s) 413, 546
Bsp143I GATC 8 cut(s) 267, 327, 351, 440, 825, 885, 909, 919
Bsp19I CCATGG 1 cut(s) 721
BspACI CCGC 7 cut(s) 182, 247, 301, 303, 711, 1015, 1110
BspANI GGCC 2 cut(s) 594, 720
BspEI TCCGGA 2 cut(s) 413, 546
BspFNI CGCG 3 cut(s) 152, 303, 1015
BspHI TCATGA 1 cut(s) 888
BspLI GGNNCC 3 cut(s) 198, 436, 567
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 3 cut(s) 335, 359, 833
BspT107I GGYRCC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 1 cut(s) 461
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 4 cut(s) 145, 301, 604, 721
BssMI GATC 8 cut(s) 267, 327, 351, 440, 825, 885, 909, 919
BssNI GRCGYC 3 cut(s) 435, 468, 1010
BssT1I CCWWGG 3 cut(s) 145, 604, 721
Bst2UI CCWGG 2 cut(s) 675, 717
Bst4CI ACNGT 6 cut(s) 119, 190, 196, 500, 625, 1103
BstACI GRCGYC 3 cut(s) 435, 468, 1010
BstC8I GCNNGC 2 cut(s) 159, 166
BstDSI CCRYGG 2 cut(s) 301, 721
BstFNI CGCG 3 cut(s) 152, 303, 1015
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 2 cut(s) 152, 437
BstKTI GATC 8 cut(s) 270, 330, 354, 443, 828, 888, 912, 922
BstMBI GATC 8 cut(s) 267, 327, 351, 440, 825, 885, 909, 919
BstMCI CGRYCG 2 cut(s) 121, 1105
BstMWI GCNNNNNNNGC 5 cut(s) 158, 386, 432, 717, 761
BstNI CCWGG 2 cut(s) 675, 717
BstNSI RCATGY 1 cut(s) 697
BstPAI GACNNNNGTC 1 cut(s) 576
BstSCI CCNGG 2 cut(s) 673, 715
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 3 cut(s) 152, 303, 1015
BstV1I GCAGC 5 cut(s) 61, 163, 173, 191, 515
BstX2I RGATCY 3 cut(s) 267, 327, 351
BstYI RGATCY 3 cut(s) 267, 327, 351
BsuRI GGCC 2 cut(s) 594, 720
BtgI CCRYGG 2 cut(s) 301, 721
BtrI CACGTC 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 159, 166
CaiI CAGNNNCTG 1 cut(s) 883
CciI TCATGA 1 cut(s) 888
CfoI GCGC 2 cut(s) 152, 437
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 5 cut(s) 196, 239, 671, 713, 1107
Cfr42I CCGCGG 1 cut(s) 304
CpoI CGGWCCG 1 cut(s) 1107
CseI GACGC 1 cut(s) 1027
Csp6I GTAC 1 cut(s) 849
CspAI ACCGGT 1 cut(s) 223
CspI CGGWCCG 1 cut(s) 1107
CviAII CATG 6 cut(s) 243, 694, 722, 834, 889, 1079
CviQI GTAC 1 cut(s) 849
DinI GGCGCC 1 cut(s) 436
DpnI GATC 8 cut(s) 269, 329, 353, 442, 827, 887, 911, 921
DpnII GATC 8 cut(s) 267, 327, 351, 440, 825, 885, 909, 919
Eco130I CCWWGG 3 cut(s) 145, 604, 721
Eco24I GRGCYC 1 cut(s) 809
Eco47I GGWCC 5 cut(s) 196, 239, 671, 713, 1107
Eco88I CYCGRG 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 673, 715
EcoT14I CCWWGG 3 cut(s) 145, 604, 721
EcoT38I GRGCYC 1 cut(s) 809
EgeI GGCGCC 1 cut(s) 436
EheI GGCGCC 1 cut(s) 436
ErhI CCWWGG 3 cut(s) 145, 604, 721
FaeI CATG 6 cut(s) 246, 697, 725, 837, 892, 1082
FalI AAGNNNNNCTT 3 cut(s) 129, 161, 1158
FaqI GGGAC 2 cut(s) 182, 1021
FatI CATG 6 cut(s) 242, 693, 721, 833, 888, 1078
FbaI TGATCA 1 cut(s) 885
Fnu4HI GCNGC 6 cut(s) 75, 162, 177, 180, 247, 529
FriOI GRGCYC 1 cut(s) 809
Fsp4HI GCNGC 6 cut(s) 75, 162, 177, 180, 247, 529
FspBI CTAG 4 cut(s) 381, 560, 840, 936
GlaI GCGC 2 cut(s) 151, 436
GluI GCNGC 6 cut(s) 75, 162, 177, 180, 247, 529
GsuI CTGGAG 3 cut(s) 552, 786, 987
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 2 cut(s) 594, 720
HapII CCGG 7 cut(s) 113, 224, 318, 349, 414, 547, 648
HgaI GACGC 1 cut(s) 1027
HhaI GCGC 2 cut(s) 152, 437
Hin1I GRCGYC 3 cut(s) 435, 468, 1010
Hin1II CATG 6 cut(s) 246, 697, 725, 837, 892, 1082
Hin6I GCGC 2 cut(s) 150, 435
HinP1I GCGC 2 cut(s) 150, 435
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 2 cut(s) 14, 208
HinfI GANTC 4 cut(s) 128, 726, 880, 904
HpaI GTTAAC 1 cut(s) 346
HpaII CCGG 7 cut(s) 113, 224, 318, 349, 414, 547, 648
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 8 cut(s) 267, 295, 582, 811, 825, 885, 903, 909
Hpy188III TCNNGA 9 cut(s) 199, 337, 414, 547, 569, 829, 877, 889, 966
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 3 cut(s) 470, 473, 1015
HpyAV CCTTC 2 cut(s) 151, 300
HpyCH4III ACNGT 6 cut(s) 119, 190, 196, 500, 625, 1103
HpyCH4V TGCA 5 cut(s) 179, 531, 755, 1044, 1078
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 386, 432, 717, 761
Hsp92I GRCGYC 3 cut(s) 435, 468, 1010
Hsp92II CATG 6 cut(s) 246, 697, 725, 837, 892, 1082
HspAI GCGC 2 cut(s) 150, 435
KasI GGCGCC 1 cut(s) 434
Kpn2I TCCGGA 2 cut(s) 413, 546
Ksp22I TGATCA 1 cut(s) 885
KspAI GTTAAC 1 cut(s) 346
KspI CCGCGG 1 cut(s) 304
Kzo9I GATC 8 cut(s) 267, 327, 351, 440, 825, 885, 909, 919
LmnI GCTCC 2 cut(s) 292, 571
Lsp1109I GCAGC 5 cut(s) 61, 163, 173, 191, 515
LweI GCATC 3 cut(s) 367, 742, 1149
MaeI CTAG 4 cut(s) 381, 560, 840, 936
MaeIII GTNAC 5 cut(s) 184, 190, 619, 625, 683
MalI GATC 8 cut(s) 269, 329, 353, 442, 827, 887, 911, 921
MboI GATC 8 cut(s) 267, 327, 351, 440, 825, 885, 909, 919
MboII GAAGA 1 cut(s) 985
MfeI CAATTG 1 cut(s) 706
MflI RGATCY 3 cut(s) 267, 327, 351
MhlI GDGCHC 1 cut(s) 809
MluCI AATT 4 cut(s) 313, 540, 706, 925
Mly113I GGCGCC 1 cut(s) 435
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 7 cut(s) 197, 230, 359, 377, 605, 698, 1173
MroI TCCGGA 2 cut(s) 413, 546
MseI TTAA 8 cut(s) 345, 453, 485, 1031, 1086, 1098, 1134, 1143
MspA1I CMGCKG 4 cut(s) 176, 182, 303, 528
MspI CCGG 7 cut(s) 113, 224, 318, 349, 414, 547, 648
MspR9I CCNGG 2 cut(s) 675, 717
MunI CAATTG 1 cut(s) 706
MvaI CCWGG 2 cut(s) 675, 717
MvnI CGCG 3 cut(s) 152, 303, 1015
MwoI GCNNNNNNNGC 5 cut(s) 158, 386, 432, 717, 761
NarI GGCGCC 1 cut(s) 435
NcoI CCATGG 1 cut(s) 721
NdeII GATC 8 cut(s) 267, 327, 351, 440, 825, 885, 909, 919
NlaIII CATG 6 cut(s) 246, 697, 725, 837, 892, 1082
NlaIV GGNNCC 3 cut(s) 198, 436, 567
NspI RCATGY 1 cut(s) 697
PagI TCATGA 1 cut(s) 888
PciI ACATGT 1 cut(s) 693
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 3 cut(s) 726, 880, 904
PflMI CCANNNNNTGG 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 673
PinAI ACCGGT 1 cut(s) 223
PkrI GCNGC 6 cut(s) 76, 163, 178, 181, 248, 530
PleI GAGTC 1 cut(s) 122
PluTI GGCGCC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 122
PscI ACATGT 1 cut(s) 693
PshAI GACNNNNGTC 1 cut(s) 576
Psp1406I AACGTT 5 cut(s) 260, 782, 867, 1034, 1094
Psp6I CCWGG 2 cut(s) 673, 715
PspGI CCWGG 2 cut(s) 673, 715
PspN4I GGNNCC 3 cut(s) 198, 436, 567
PspPI GGNCC 5 cut(s) 196, 239, 671, 713, 1107
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 883
PsuI RGATCY 3 cut(s) 267, 327, 351
PvuII CAGCTG 2 cut(s) 176, 528
RsaI GTAC 1 cut(s) 850
RsaNI GTAC 1 cut(s) 849
Rsr2I CGGWCCG 1 cut(s) 1107
RsrII CGGWCCG 1 cut(s) 1107
SacII CCGCGG 1 cut(s) 304
SaqAI TTAA 8 cut(s) 345, 453, 485, 1031, 1086, 1098, 1134, 1143
SatI GCNGC 6 cut(s) 75, 162, 177, 180, 247, 529
Sau3AI GATC 8 cut(s) 267, 327, 351, 440, 825, 885, 909, 919
Sau96I GGNCC 5 cut(s) 196, 239, 671, 713, 1107
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 675, 717
SduI GDGCHC 1 cut(s) 809
SfaNI GCATC 3 cut(s) 367, 742, 1149
SfcI CTRYAG 1 cut(s) 177
SfoI GGCGCC 1 cut(s) 436
Sfr303I CCGCGG 1 cut(s) 304
SgrBI CCGCGG 1 cut(s) 304
SinI GGWCC 5 cut(s) 196, 239, 671, 713, 1107
SmlI CTYRAG 1 cut(s) 1164
SmoI CTYRAG 1 cut(s) 1164
Sse9I AATT 4 cut(s) 313, 540, 706, 925
SsiI CCGC 7 cut(s) 182, 247, 301, 303, 711, 1015, 1110
SspDI GGCGCC 1 cut(s) 434
SspI AATATT 1 cut(s) 1132
SspMI CTAG 4 cut(s) 381, 560, 840, 936
StyD4I CCNGG 2 cut(s) 673, 715
StyI CCWWGG 3 cut(s) 145, 604, 721
TaaI ACNGT 6 cut(s) 119, 190, 196, 500, 625, 1103
TaqI TCGA 5 cut(s) 121, 235, 406, 918, 1118
TaqII GACCGA 1 cut(s) 1095
TasI AATT 4 cut(s) 313, 540, 706, 925
TatI WGTACW 1 cut(s) 848
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 3 cut(s) 726, 880, 904
Tru1I TTAA 8 cut(s) 345, 453, 485, 1031, 1086, 1098, 1134, 1143
Tru9I TTAA 8 cut(s) 345, 453, 485, 1031, 1086, 1098, 1134, 1143
TseI GCWGC 5 cut(s) 74, 161, 176, 179, 528
TspDTI ATGAA 4 cut(s) 74, 632, 774, 905
TspGWI ACGGA 1 cut(s) 1047
Van91I CCANNNNNTGG 1 cut(s) 722
VpaK11BI GGWCC 5 cut(s) 196, 239, 671, 713, 1107
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 697
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XspI CTAG 4 cut(s) 381, 560, 840, 936
ZraI GACGTC 2 cut(s) 469, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.