MD15G1143800.v1.1

Polygalacturonase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
10614000 .. 10616104
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1143800.v1.1.491

Sequence Viewer

Length: 1218 bp
ATGGCTTATACATCAAGCTTCTGTGGCAACATTCATAATTATTATGTAGCAGCAGTAATGCTGTTTTTCACAATCAGCATATTGTTCTTGCAGTCTTCCAATGCAGCGGCAGTTAGCTACAATGTGATGAAGTTTGGTGCACGAGCAGATGGGAAGACGGACTCGACCCAAGCATTCGTCAAGGCATGGGCATCGGCGTGCAGCTCCGGGCAGGGCAATGCTGTCATGTACATCCCCAAAGGAAGGTTCTTGTTGAAGGCTGTGGTGTTTAGAGGTCCATGCAAGACCAGACAAGTAACAGTTCGAATAGACGGAACCCTTGTGGCCCCCACGGACTATAGGGCTTTGGGAAACTCAGGCTACTGGATTTTATTCATTGAGGTCACCGGACTTAGGGTCCTCGGTGGTTCCCTCGACGCCAGGGGGGTTGCATTTTGGGCTTGCAGGAAATCCGGCAAGAGTTGCCCTGTTGGAGCTAGGTCTATAACGTTCAATTGGGCAAACAACGTTCTGGTAAGTGGTTTAACATCGATCAACAGTCAGGCAACCCACCTTGTAGTCAACAGCTGCAACAATGTGGTCGTTCGAAACGTGAAGATCATCGCTCCGAGTGAAAGCCCAAACACAGATGGCATTCATGTGCAGAGCTCTACCGGAGTCACCATCACGGGCAGCATCTTGCAAACCGGAGACGATTGCATATCAATCGGTCCTGGCACCAGAAACCTCTATATGAGCAACATCAAGTGTGGTCCAGGCCATGGCGTAAGCATTGGAAGTCTAGGCAAGGATCTCAAGGAAGATGGTGTCCAAAATGTAACCCTAACGAATGCAGTGTTCAGTGGATCAGACAATGGAGTACGAATAAAGTCATGGGCCAGGCCTAGCACTGGCTTCGTTAAGAACATTCTCTTCCAAAACATCATCATGAGGAACGTTAAAAACCCCGTCATCATTGACCAGGATTATTGCCCCAATAACCAAGGCTGTCCTTCTATGAGTTCGGGTGTGAAGATTAGTCAAGTGACATACAGAAACATACAAGGGACGTCGGGAACGGCAGAGGCAGTAACATTTGAATGCAGCCCTAGCACTCCATGTACAGGGATTAGATTGCAAGACATCAAGCTTACATATCTGAATAAGGCTACCACGTCATCGTGCAAGAACATTAGTGGAACCAGCACTGGACTGCTTATGCCAGATTCTTGTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

406

Amino Acids

43.09

Weight (kDa)

9.34

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 40 - 88 3.3e-07 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 73 - 392 1.3e-89 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1052
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 761
AciI CCGC 1 cut(s) 107
AclI AACGTT 3 cut(s) 488, 507, 936
AclWI GGATC 2 cut(s) 798, 853
AcyI GRCGYC 2 cut(s) 417, 1049
AfaI GTAC 3 cut(s) 230, 861, 1102
AfiI CCNNNNNNNGG 5 cut(s) 243, 393, 761, 890, 1103
AgsI TTSAA 3 cut(s) 256, 493, 1079
AhdI GACNNNNNGTC 1 cut(s) 395
AjiI CACGTC 1 cut(s) 1155
AjnI CCWGG 5 cut(s) 419, 712, 754, 878, 960
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 7 cut(s) 18, 117, 204, 476, 567, 648, 1129
AluI AGCT 7 cut(s) 18, 117, 204, 476, 567, 648, 1129
Alw21I GWGCWC 2 cut(s) 142, 650
Alw26I GTCTC 1 cut(s) 684
Alw44I GTGCAC 1 cut(s) 138
AlwI GGATC 2 cut(s) 798, 853
AoxI GGCC 4 cut(s) 324, 757, 876, 881
ApaLI GTGCAC 1 cut(s) 138
ApeKI GCWGC 6 cut(s) 50, 104, 201, 567, 672, 1083
AspS9I GGNCC 6 cut(s) 275, 325, 397, 710, 752, 876
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 2 cut(s) 376, 652
AsuII TTCGAA 2 cut(s) 304, 586
AvaII GGWCC 4 cut(s) 275, 397, 710, 752
BaeGI GKGCMC 1 cut(s) 142
BanI GGYRCC 1 cut(s) 716
BanII GRGCYC 1 cut(s) 650
BauI CACGAG 1 cut(s) 141
BbsI GAAGAC 2 cut(s) 87, 161
Bbv12I GWGCWC 2 cut(s) 142, 650
BbvI GCAGC 6 cut(s) 62, 116, 213, 554, 684, 1095
BccI CCATC 4 cut(s) 143, 623, 671, 797
BceAI ACGGC 1 cut(s) 1074
BcgI CGANNNNNNTGC 6 cut(s) 174, 208, 688, 722, 877, 911
BciT130I CCWGG 5 cut(s) 421, 714, 756, 880, 962
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 684
BfaI CTAG 4 cut(s) 477, 782, 885, 1089
BfmI CTRYAG 1 cut(s) 337
BisI GCNGC 7 cut(s) 51, 105, 108, 202, 568, 673, 1084
BlsI GCNGC 7 cut(s) 52, 106, 109, 203, 569, 674, 1085
Bme1390I CCNGG 6 cut(s) 208, 421, 714, 756, 880, 962
Bme18I GGWCC 4 cut(s) 275, 397, 710, 752
BmeRI GACNNNNNGTC 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 1155
BmgT120I GGNCC 6 cut(s) 275, 325, 397, 710, 752, 876
BmiI GGNNCC 6 cut(s) 316, 327, 398, 409, 718, 1180
BmrFI CCNGG 6 cut(s) 208, 421, 714, 756, 880, 962
BmsI GCATC 2 cut(s) 200, 684
BpiI GAAGAC 2 cut(s) 87, 161
Bpu14I TTCGAA 2 cut(s) 304, 586
BpuEI CTTGAG 1 cut(s) 779
BpuMI CCSGG 1 cut(s) 208
Bsa29I ATCGAT 1 cut(s) 530
BsaHI GRCGYC 2 cut(s) 417, 1049
BsaJI CCNNGG 5 cut(s) 330, 400, 420, 760, 982
BsaWI WCCGGW 3 cut(s) 386, 653, 686
Bsc4I CCNNNNNNNGG 5 cut(s) 243, 393, 761, 890, 1103
Bse1I ACTGG 3 cut(s) 368, 895, 1192
Bse3DI GCAATG 1 cut(s) 223
BseBI CCWGG 5 cut(s) 421, 714, 756, 880, 962
BseCI ATCGAT 1 cut(s) 530
BseDI CCNNGG 5 cut(s) 330, 400, 420, 760, 982
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 5 cut(s) 243, 393, 761, 890, 1103
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 3 cut(s) 368, 895, 1192
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 6 cut(s) 62, 116, 213, 554, 684, 1095
BsgI GTGCAG 2 cut(s) 220, 662
BshFI GGCC 4 cut(s) 326, 759, 878, 883
BshNI GGYRCC 1 cut(s) 716
BshVI ATCGAT 1 cut(s) 530
BsiHKAI GWGCWC 2 cut(s) 142, 650
BsiSI CCGG 5 cut(s) 207, 387, 453, 654, 687
BslFI GGGAC 1 cut(s) 1060
BslI CCNNNNNNNGG 5 cut(s) 243, 393, 761, 890, 1103
BsmAI GTCTC 1 cut(s) 684
BsmBI CGTCTC 1 cut(s) 684
BsmFI GGGAC 1 cut(s) 1060
BsmI GAATGC 4 cut(s) 173, 633, 835, 1085
BsnI GGCC 4 cut(s) 326, 759, 878, 883
Bsp119I TTCGAA 2 cut(s) 304, 586
Bsp1286I GDGCHC 2 cut(s) 142, 650
Bsp1407I TGTACA 2 cut(s) 228, 1100
Bsp143I GATC 4 cut(s) 531, 597, 790, 845
Bsp19I CCATGG 1 cut(s) 760
BspACI CCGC 1 cut(s) 107
BspANI GGCC 4 cut(s) 326, 759, 878, 883
BspCNI CTCAG 1 cut(s) 368
BspDI ATCGAT 1 cut(s) 530
BspHI TCATGA 1 cut(s) 927
BspLI GGNNCC 6 cut(s) 316, 327, 398, 409, 718, 1180
BspPI GGATC 2 cut(s) 798, 853
BspT104I TTCGAA 2 cut(s) 304, 586
BspT107I GGYRCC 1 cut(s) 716
BsrDI GCAATG 1 cut(s) 223
BsrGI TGTACA 2 cut(s) 228, 1100
BsrI ACTGG 3 cut(s) 368, 895, 1192
BssECI CCNNGG 5 cut(s) 330, 400, 420, 760, 982
BssMI GATC 4 cut(s) 531, 597, 790, 845
BssNI GRCGYC 2 cut(s) 417, 1049
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 760, 982
Bst2BI CACGAG 1 cut(s) 141
Bst2UI CCWGG 5 cut(s) 421, 714, 756, 880, 962
Bst4CI ACNGT 2 cut(s) 301, 539
Bst6I CTCTTC 1 cut(s) 917
BstACI GRCGYC 2 cut(s) 417, 1049
BstAPI GCANNNNNTGC 1 cut(s) 462
BstAUI TGTACA 2 cut(s) 228, 1100
BstBI TTCGAA 2 cut(s) 304, 586
BstC8I GCNNGC 2 cut(s) 199, 442
BstDEI CTNAG 2 cut(s) 355, 392
BstDSI CCRYGG 2 cut(s) 330, 760
BstEII GGTNACC 1 cut(s) 382
BstF5I GGATG 1 cut(s) 231
BstKTI GATC 4 cut(s) 534, 600, 793, 848
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 4 cut(s) 531, 597, 790, 845
BstMWI GCNNNNNNNGC 4 cut(s) 24, 437, 462, 1089
BstNI CCWGG 5 cut(s) 421, 714, 756, 880, 962
BstPI GGTNACC 1 cut(s) 382
BstSCI CCNGG 6 cut(s) 206, 419, 712, 754, 878, 960
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 6 cut(s) 62, 116, 213, 554, 684, 1095
BstV2I GAAGAC 2 cut(s) 87, 161
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
Bsu15I ATCGAT 1 cut(s) 530
BsuRI GGCC 4 cut(s) 326, 759, 878, 883
BsuTUI ATCGAT 1 cut(s) 530
BtgI CCRYGG 2 cut(s) 330, 760
BtgZI GCGATG 1 cut(s) 586
BtrI CACGTC 1 cut(s) 1155
BtsCI GGATG 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 4 cut(s) 840, 847, 888, 1185
Cac8I GCNNGC 2 cut(s) 199, 442
CciI TCATGA 1 cut(s) 927
Cfr13I GGNCC 6 cut(s) 275, 325, 397, 710, 752, 876
ClaI ATCGAT 1 cut(s) 530
CseI GACGC 1 cut(s) 425
Csp6I GTAC 3 cut(s) 229, 860, 1101
CviAII CATG 8 cut(s) 186, 226, 279, 638, 761, 873, 928, 1098
CviQI GTAC 3 cut(s) 229, 860, 1101
DdeI CTNAG 2 cut(s) 355, 392
DpnI GATC 4 cut(s) 533, 599, 792, 847
DpnII GATC 4 cut(s) 531, 597, 790, 845
DriI GACNNNNNGTC 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 917
Eam1105I GACNNNNNGTC 1 cut(s) 395
EarI CTCTTC 1 cut(s) 917
Ecl136II GAGCTC 1 cut(s) 648
Eco130I CCWWGG 2 cut(s) 760, 982
Eco147I AGGCCT 1 cut(s) 883
Eco24I GRGCYC 1 cut(s) 650
Eco47I GGWCC 4 cut(s) 275, 397, 710, 752
Eco53kI GAGCTC 1 cut(s) 648
Eco91I GGTNACC 1 cut(s) 382
EcoICRI GAGCTC 1 cut(s) 648
EcoO109I RGGNCCY 1 cut(s) 397
EcoO65I GGTNACC 1 cut(s) 382
EcoRII CCWGG 5 cut(s) 419, 712, 754, 878, 960
EcoT14I CCWWGG 2 cut(s) 760, 982
EcoT38I GRGCYC 1 cut(s) 650
ErhI CCWWGG 2 cut(s) 760, 982
Esp3I CGTCTC 1 cut(s) 684
FaeI CATG 8 cut(s) 189, 229, 282, 641, 764, 876, 931, 1101
FaqI GGGAC 1 cut(s) 1060
FatI CATG 8 cut(s) 185, 225, 278, 637, 760, 872, 927, 1097
Fnu4HI GCNGC 7 cut(s) 51, 105, 108, 202, 568, 673, 1084
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 650
Fsp4HI GCNGC 7 cut(s) 51, 105, 108, 202, 568, 673, 1084
FspBI CTAG 4 cut(s) 477, 782, 885, 1089
GluI GCNGC 7 cut(s) 51, 105, 108, 202, 568, 673, 1084
HaeIII GGCC 4 cut(s) 326, 759, 878, 883
HapII CCGG 5 cut(s) 207, 387, 453, 654, 687
HgaI GACGC 1 cut(s) 425
Hin1I GRCGYC 2 cut(s) 417, 1049
Hin1II CATG 8 cut(s) 189, 229, 282, 641, 764, 876, 931, 1101
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 2 cut(s) 16, 1127
HinfI GANTC 3 cut(s) 161, 657, 1205
HpaII CCGG 5 cut(s) 207, 387, 453, 654, 687
HphI GGTGA 2 cut(s) 376, 652
Hpy166II GTNNAC 2 cut(s) 140, 562
Hpy188I TCNGA 3 cut(s) 609, 850, 1140
Hpy188III TCNNGA 2 cut(s) 928, 1053
Hpy8I GTNNAC 2 cut(s) 140, 562
Hpy99I CGWCG 2 cut(s) 419, 1054
HpyAV CCTTC 3 cut(s) 237, 250, 1002
HpyCH4III ACNGT 2 cut(s) 301, 539
HpyCH4IV ACGT 6 cut(s) 488, 507, 591, 936, 1049, 1154
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 437, 462, 1089
HpyF3I CTNAG 2 cut(s) 355, 392
HpySE526I ACGT 6 cut(s) 488, 507, 591, 936, 1049, 1154
Hsp92I GRCGYC 2 cut(s) 417, 1049
Hsp92II CATG 8 cut(s) 189, 229, 282, 641, 764, 876, 931, 1101
Kzo9I GATC 4 cut(s) 531, 597, 790, 845
LmnI GCTCC 3 cut(s) 209, 473, 610
Lsp1109I GCAGC 6 cut(s) 62, 116, 213, 554, 684, 1095
LweI GCATC 2 cut(s) 200, 684
MaeI CTAG 4 cut(s) 477, 782, 885, 1089
MaeII ACGT 6 cut(s) 488, 507, 591, 936, 1049, 1154
MaeIII GTNAC 6 cut(s) 295, 382, 658, 817, 1024, 1069
MalI GATC 4 cut(s) 533, 599, 792, 847
MboI GATC 4 cut(s) 531, 597, 790, 845
MboII GAAGA 6 cut(s) 87, 166, 607, 812, 904, 1024
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 2 cut(s) 142, 650
MluCI AATT 2 cut(s) 37, 493
MlyI GAGTC 2 cut(s) 155, 666
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 7 cut(s) 266, 373, 410, 422, 737, 924, 1057
MseI TTAA 3 cut(s) 524, 900, 939
MslI CAYNNNNRTG 4 cut(s) 196, 638, 926, 1078
MspA1I CMGCKG 2 cut(s) 107, 567
MspI CCGG 5 cut(s) 207, 387, 453, 654, 687
MspR9I CCNGG 6 cut(s) 208, 421, 714, 756, 880, 962
MunI CAATTG 1 cut(s) 493
Mva1269I GAATGC 4 cut(s) 173, 633, 835, 1085
MvaI CCWGG 5 cut(s) 421, 714, 756, 880, 962
MwoI GCNNNNNNNGC 4 cut(s) 24, 437, 462, 1089
NciI CCSGG 1 cut(s) 208
NcoI CCATGG 1 cut(s) 760
NdeII GATC 4 cut(s) 531, 597, 790, 845
NlaIII CATG 8 cut(s) 189, 229, 282, 641, 764, 876, 931, 1101
NlaIV GGNNCC 6 cut(s) 316, 327, 398, 409, 718, 1180
NmuCI GTSAC 3 cut(s) 382, 658, 1024
NspV TTCGAA 2 cut(s) 304, 586
PagI TCATGA 1 cut(s) 927
PceI AGGCCT 1 cut(s) 883
PcsI WCGNNNNNNNCGW 1 cut(s) 588
PctI GAATGC 4 cut(s) 173, 633, 835, 1085
PfeI GAWTC 1 cut(s) 1205
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 7 cut(s) 52, 106, 109, 203, 569, 674, 1085
PleI GAGTC 2 cut(s) 155, 665
PpsI GAGTC 2 cut(s) 155, 665
PpuMI RGGWCCY 1 cut(s) 397
Psp124BI GAGCTC 1 cut(s) 650
Psp1406I AACGTT 3 cut(s) 488, 507, 936
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 5 cut(s) 419, 712, 754, 878, 960
PspEI GGTNACC 1 cut(s) 382
PspGI CCWGG 5 cut(s) 419, 712, 754, 878, 960
PspN4I GGNNCC 6 cut(s) 316, 327, 398, 409, 718, 1180
PspPI GGNCC 6 cut(s) 275, 325, 397, 710, 752, 876
PspPPI RGGWCCY 1 cut(s) 397
PsuI RGATCY 1 cut(s) 790
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 3 cut(s) 230, 861, 1102
RsaNI GTAC 3 cut(s) 229, 860, 1101
RseI CAYNNNNRTG 4 cut(s) 196, 638, 926, 1078
SacI GAGCTC 1 cut(s) 650
SaqAI TTAA 3 cut(s) 524, 900, 939
SatI GCNGC 7 cut(s) 51, 105, 108, 202, 568, 673, 1084
Sau3AI GATC 4 cut(s) 531, 597, 790, 845
Sau96I GGNCC 6 cut(s) 275, 325, 397, 710, 752, 876
SchI GAGTC 2 cut(s) 155, 666
ScrFI CCNGG 6 cut(s) 208, 421, 714, 756, 880, 962
SduI GDGCHC 2 cut(s) 142, 650
SfaNI GCATC 2 cut(s) 200, 684
SfcI CTRYAG 1 cut(s) 337
SfuI TTCGAA 2 cut(s) 304, 586
SinI GGWCC 4 cut(s) 275, 397, 710, 752
SmiMI CAYNNNNRTG 4 cut(s) 196, 638, 926, 1078
SmlI CTYRAG 1 cut(s) 794
SmoI CTYRAG 1 cut(s) 794
Sse9I AATT 2 cut(s) 37, 493
SseBI AGGCCT 1 cut(s) 883
SsiI CCGC 1 cut(s) 107
SspMI CTAG 4 cut(s) 477, 782, 885, 1089
SstI GAGCTC 1 cut(s) 650
StuI AGGCCT 1 cut(s) 883
StyD4I CCNGG 6 cut(s) 206, 419, 712, 754, 878, 960
StyI CCWWGG 2 cut(s) 760, 982
TaaI ACNGT 2 cut(s) 301, 539
TaiI ACGT 6 cut(s) 491, 510, 594, 939, 1052, 1157
TaqI TCGA 5 cut(s) 164, 304, 414, 530, 586
TaqII GACCGA 1 cut(s) 698
TasI AATT 2 cut(s) 37, 493
TatI WGTACW 2 cut(s) 228, 1100
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 1205
Tru1I TTAA 3 cut(s) 524, 900, 939
Tru9I TTAA 3 cut(s) 524, 900, 939
TscAI CASTG 4 cut(s) 840, 847, 895, 1192
TseFI GTSAC 3 cut(s) 382, 658, 1024
TseI GCWGC 6 cut(s) 50, 104, 201, 567, 672, 1083
Tsp45I GTSAC 3 cut(s) 382, 658, 1024
TspDTI ATGAA 4 cut(s) 23, 143, 364, 626
TspGWI ACGGA 3 cut(s) 173, 327, 347
TspRI CASTG 4 cut(s) 840, 847, 895, 1192
Van91I CCANNNNNTGG 1 cut(s) 761
VneI GTGCAC 1 cut(s) 138
VpaK11BI GGWCC 4 cut(s) 275, 397, 710, 752
XspI CTAG 4 cut(s) 477, 782, 885, 1089
ZraI GACGTC 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.