Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009066

Physical Location & Seq

Genomic Coordinates Forward (+)

20023904 .. 20025753

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCTATGATCATCAATCACTGCGCAACCCTACTACTTATCTCTCTTTTCTTGTTAATATTATCGTTTGGGTTATCGAATGCAGCCGCAACTTATAATGTGATGAAATATGGGGCAAAAGCAGATGGGATCACAGACTCAACCCAAGCATTTCTCAAGACATGGGCAGCAGCATGCAGCTCTCGCCAGACAGCCTTCATGTACGTCCCCAAAGGAAGGTTCTTGCTGAAAGCTGCAGTATTCAGAGGCCCTTGCAAGAGTAGGGTTCTGGTTCAGATAGACGGAACTCTCATTGCCCCTACTGATTATCGCGCTTTGGGAAACTCCGGCTACTGGATCTTGTTCATTAAGATCAATGGACTTGGCGTTTACGGTGCTAAACTCGATGCCAAGGGAGCTGGCTTTTGGGCTTGCCGGAAATCTGGAAAGAGCTGCCCTGTTGCAGCTAGGTCGATAACGTTCAATTGGGTAAACAACCTTGTGATAAGTGATTTAGTATCCATAAACAGCCAGGAAACTCATCTTGTGATCAACAGCTGCAAAAATGTGGTGGTTCGAAACGTTAAGCTGTCTGCTCCGGCCGACAGCCCCAACACTGATGGCATTCATGTGCAGGGCTCAACTTGGGTTACTATCACCGGTGCAACATTGATGACCGGAGACGATTGTGTATCGATTGGTCCGGGCACCAAACACCTCCACATGAACAAAATCATGTGCGGCCCAGGACATGGTGTAAGCATTGGTAGTCTAGGCAAGGATGTGAAGGAAGCTGGGGTGCAAGATGTGACGTTGACGAATGCAGTTTTCAGTGGATCGGATAATGGAGTACGAATAAAGACATGGGCAAGAGCCAGCACTGGGTTTGTGACCAACATTCTCTTTCAGAACATCGTGATGAGGAATGTTAAGAACCCCGTCATCATCGATCAGAACTATTGCCCAAGTAAAAACTGCCCTAACCAGAGTTCTGGTGTGAAGATTAGTCAGGTGACATACAAGAACATACAAGGGACGTCGGCGACGGCGGAGGCAGTGACATTTGATTGCAGCCCAAGTAACCCATGCAGAAGGATAAAATTGCAGGACATCAAGCTTACGTACCTGAATAAGGTAGCCACATCTTCATGCAACAACATTGATGGAACCAGCACCGGAGTACTCATGCCCCAGAGTTGCGTCAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

397

Amino Acids

42.36

Weight (kDa)

9.46

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	33 - 283	3.7e-10	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	59 - 381	4.8e-92	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43890
fragaria_vesca	FvH4_1g00260 FvH4_7g26550
malus_domestica	MD00G1087800.v1.1 MD15G1143800.v1.1
prunus_persica	Prupe.7G269400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084561 RchiOBHm_Chr2g0149621
rosa_laevigata	RLG00000015627 RLG00000020431
rosa_multiflora	Rmu_sc0006867.1_g000032
rosa_roxburghii	Rroxscaffold_2G00097870 Rroxscaffold_2G00155960
rosa_rugosa	Rorug01G0455100 Rorug02G0413500
rosa_samantha	Rh2BG485700 Rh2CG003200 Rh2DG003200
rosa_wichuraiana	Rw2G000280 Rw2G038630 Rw7G041010 Rw7G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
AatII	GACGTC	1 cut(s)	1019
Acc16I	TGCGCA	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	686
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccII	CGCG	1 cut(s)	312
AciI	CCGC	3 cut(s)	87, 720, 1028
AclI	AACGTT	2 cut(s)	458, 561
AclWI	GGATC	3 cut(s)	137, 344, 823
AcoI	YGGCCR	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	1016
AfaI	GTAC	4 cut(s)	203, 831, 1103, 1161
AfiI	CCNNNNNNNGG	5 cut(s)	216, 333, 731, 861, 1111
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	510, 724
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	9 cut(s)	180, 233, 398, 432, 446, 537, 568, 773, 1096
AluI	AGCT	9 cut(s)	180, 233, 398, 432, 446, 537, 568, 773, 1096
Alw26I	GTCTC	1 cut(s)	654
AlwI	GGATC	3 cut(s)	137, 344, 823
AoxI	GGCC	3 cut(s)	247, 579, 721
ApeKI	GCWGC	9 cut(s)	83, 167, 170, 177, 233, 432, 443, 537, 1050
AsiGI	ACCGGT	1 cut(s)	638
AspLEI	GCGC	2 cut(s)	26, 314
AspS9I	GGNCC	3 cut(s)	248, 680, 722
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	2 cut(s)	628, 1003
AsuII	TTCGAA	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	620
BbvI	GCAGC	9 cut(s)	95, 179, 182, 189, 220, 419, 455, 524, 1062
BccI	CCATC	3 cut(s)	119, 593, 1136
BceAI	ACGGC	1 cut(s)	1041
BcgI	CGANNNNNNTGC	2 cut(s)	432, 466
BciT130I	CCWGG	2 cut(s)	512, 726
BciVI	GTATCC	1 cut(s)	508
BclI	TGATCA	2 cut(s)	9, 528
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	1 cut(s)	654
BfaI	CTAG	2 cut(s)	447, 752
BfmI	CTRYAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	508
BmcAI	AGTACT	1 cut(s)	1161
Bme1390I	CCNGG	3 cut(s)	512, 684, 726
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	3 cut(s)	248, 680, 722
BmiI	GGNNCC	2 cut(s)	688, 1147
BmrFI	CCNGG	3 cut(s)	512, 684, 726
BmrI	ACTGGG	1 cut(s)	870
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	556
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	684
Bsa29I	ATCGAT	2 cut(s)	674, 927
BsaAI	YACGTR	1 cut(s)	1101
BsaHI	GRCGYC	1 cut(s)	1016
BsaJI	CCNNGG	2 cut(s)	390, 724
BsaWI	WCCGGW	3 cut(s)	638, 656, 1154
Bsc4I	CCNNNNNNNGG	5 cut(s)	216, 333, 731, 861, 1111
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	2 cut(s)	338, 865
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	512, 726
BseCI	ATCGAT	2 cut(s)	674, 927
BseDI	CCNNGG	2 cut(s)	390, 724
BseGI	GGATG	1 cut(s)	766
BseLI	CCNNNNNNNGG	5 cut(s)	216, 333, 731, 861, 1111
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	338, 865
BseSI	GKGCMC	1 cut(s)	689
BseX3I	CGGCCG	1 cut(s)	579
BseXI	GCAGC	9 cut(s)	95, 179, 182, 189, 220, 419, 455, 524, 1062
BseYI	CCCAGC	1 cut(s)	773
BsgI	GTGCAG	1 cut(s)	632
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	3 cut(s)	249, 581, 723
BshNI	GGYRCC	1 cut(s)	686
BshTI	ACCGGT	1 cut(s)	638
BshVI	ATCGAT	2 cut(s)	674, 927
BsiEI	CGRYCG	1 cut(s)	582
BsiSI	CCGG	7 cut(s)	327, 415, 578, 639, 657, 683, 1155
BslFI	GGGAC	2 cut(s)	191, 1027
BslI	CCNNNNNNNGG	5 cut(s)	216, 333, 731, 861, 1111
BsmAI	GTCTC	1 cut(s)	654
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	2 cut(s)	191, 1027
BsmI	GAATGC	3 cut(s)	85, 603, 805
BsnI	GGCC	3 cut(s)	249, 581, 723
Bsp119I	TTCGAA	1 cut(s)	556
Bsp1286I	GDGCHC	2 cut(s)	620, 689
Bsp143I	GATC	7 cut(s)	9, 129, 336, 351, 528, 815, 928
BspACI	CCGC	3 cut(s)	87, 720, 1028
BspANI	GGCC	3 cut(s)	249, 581, 723
BspDI	ATCGAT	2 cut(s)	674, 927
BspFNI	CGCG	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	688, 1147
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	3 cut(s)	137, 344, 823
BspT104I	TTCGAA	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	686
BsrDI	GCAATG	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	2 cut(s)	338, 865
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	2 cut(s)	390, 724
BssMI	GATC	7 cut(s)	9, 129, 336, 351, 528, 815, 928
BssNI	GRCGYC	1 cut(s)	1016
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	512, 726
Bst4CI	ACNGT	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	1016
BstBAI	YACGTR	1 cut(s)	1101
BstBI	TTCGAA	1 cut(s)	556
BstC8I	GCNNGC	4 cut(s)	175, 400, 412, 856
BstENI	CCTNNNNNAGG	1 cut(s)	1109
BstF5I	GGATG	1 cut(s)	766
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	26, 314
BstKTI	GATC	7 cut(s)	12, 132, 339, 354, 531, 818, 931
BstMAI	GTCTC	1 cut(s)	654
BstMBI	GATC	7 cut(s)	9, 129, 336, 351, 528, 815, 928
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 395
BstNI	CCWGG	2 cut(s)	512, 726
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	3 cut(s)	510, 682, 724
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	689
BstSNI	TACGTA	1 cut(s)	1101
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	9 cut(s)	95, 179, 182, 189, 220, 419, 455, 524, 1062
BstX2I	RGATCY	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	336
BstZI	CGGCCG	1 cut(s)	579
Bsu15I	ATCGAT	2 cut(s)	674, 927
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	3 cut(s)	249, 581, 723
BsuTUI	ATCGAT	2 cut(s)	674, 927
BtsCI	GGATG	1 cut(s)	766
BtsI	GCAGTG	2 cut(s)	19, 1041
BtsIMutI	CAGTG	5 cut(s)	19, 594, 817, 858, 1041
Cac8I	GCNNGC	4 cut(s)	175, 400, 412, 856
CfoI	GCGC	2 cut(s)	26, 314
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	3 cut(s)	248, 680, 722
ClaI	ATCGAT	2 cut(s)	674, 927
CseI	GACGC	1 cut(s)	1168
Csp6I	GTAC	4 cut(s)	202, 830, 1102, 1160
CspAI	ACCGGT	1 cut(s)	638
CviQI	GTAC	4 cut(s)	202, 830, 1102, 1160
DpnI	GATC	7 cut(s)	11, 131, 338, 353, 530, 817, 930
DpnII	GATC	7 cut(s)	9, 129, 336, 351, 528, 815, 928
EaeI	YGGCCR	1 cut(s)	579
EagI	CGGCCG	1 cut(s)	579
EciI	GGCGGA	1 cut(s)	1043
EclXI	CGGCCG	1 cut(s)	579
Eco105I	TACGTA	1 cut(s)	1101
Eco130I	CCWWGG	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	620
Eco47I	GGWCC	1 cut(s)	680
Eco52I	CGGCCG	1 cut(s)	579
EcoNI	CCTNNNNNAGG	1 cut(s)	1109
EcoO109I	RGGNCCY	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	510, 724
EcoT14I	CCWWGG	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	620
ErhI	CCWWGG	1 cut(s)	390
Esp3I	CGTCTC	1 cut(s)	654
FaqI	GGGAC	2 cut(s)	191, 1027
FbaI	TGATCA	2 cut(s)	9, 528
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	1 cut(s)	620
FspBI	CTAG	2 cut(s)	447, 752
FspI	TGCGCA	1 cut(s)	25
GlaI	GCGC	2 cut(s)	25, 313
GsaI	CCCAGC	1 cut(s)	777
HaeIII	GGCC	3 cut(s)	249, 581, 723
HapII	CCGG	7 cut(s)	327, 415, 578, 639, 657, 683, 1155
HgaI	GACGC	1 cut(s)	1168
HhaI	GCGC	2 cut(s)	26, 314
Hin1I	GRCGYC	1 cut(s)	1016
Hin6I	GCGC	2 cut(s)	24, 312
HinP1I	GCGC	2 cut(s)	24, 312
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HindIII	AAGCTT	1 cut(s)	1094
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	7 cut(s)	327, 415, 578, 639, 657, 683, 1155
HphI	GGTGA	2 cut(s)	628, 1003
Hpy166II	GTNNAC	3 cut(s)	370, 472, 795
Hpy188I	TCNGA	6 cut(s)	245, 276, 820, 888, 933, 1184
Hpy188III	TCNNGA	3 cut(s)	157, 423, 895
Hpy8I	GTNNAC	3 cut(s)	370, 472, 795
Hpy99I	CGWCG	2 cut(s)	1021, 1027
HpyAV	CCTTC	4 cut(s)	205, 210, 760, 1065
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	6 cut(s)	204, 458, 561, 791, 1016, 1100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 395
HpySE526I	ACGT	6 cut(s)	204, 458, 561, 791, 1016, 1100
Hsp92I	GRCGYC	1 cut(s)	1016
HspAI	GCGC	2 cut(s)	24, 312
Ksp22I	TGATCA	2 cut(s)	9, 528
Kzo9I	GATC	7 cut(s)	9, 129, 336, 351, 528, 815, 928
LmnI	GCTCC	2 cut(s)	395, 580
Lsp1109I	GCAGC	9 cut(s)	95, 179, 182, 189, 220, 419, 455, 524, 1062
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	2 cut(s)	447, 752
MaeII	ACGT	6 cut(s)	204, 458, 561, 791, 1016, 1100
MaeIII	GTNAC	6 cut(s)	628, 787, 868, 991, 1036, 1058
MalI	GATC	7 cut(s)	11, 131, 338, 353, 530, 817, 930
MboI	GATC	7 cut(s)	9, 129, 336, 351, 528, 815, 928
MboII	GAAGA	2 cut(s)	991, 1116
MfeI	CAATTG	1 cut(s)	463
MflI	RGATCY	1 cut(s)	336
MhlI	GDGCHC	2 cut(s)	620, 689
MluCI	AATT	2 cut(s)	463, 1079
MlyI	GAGTC	1 cut(s)	131
MnlI	CCTC	4 cut(s)	239, 707, 894, 1024
MseI	TTAA	4 cut(s)	56, 348, 564, 909
MslI	CAYNNNNRTG	3 cut(s)	608, 896, 1126
MspA1I	CMGCKG	1 cut(s)	537
MspI	CCGG	7 cut(s)	327, 415, 578, 639, 657, 683, 1155
MspR9I	CCNGG	3 cut(s)	512, 684, 726
MunI	CAATTG	1 cut(s)	463
Mva1269I	GAATGC	3 cut(s)	85, 603, 805
MvaI	CCWGG	2 cut(s)	512, 726
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	183, 395
NciI	CCSGG	1 cut(s)	684
NdeII	GATC	7 cut(s)	9, 129, 336, 351, 528, 815, 928
NlaIV	GGNNCC	2 cut(s)	688, 1147
NmuCI	GTSAC	4 cut(s)	787, 868, 991, 1036
NsbI	TGCGCA	1 cut(s)	25
NspI	RCATGY	1 cut(s)	177
NspV	TTCGAA	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	177
PctI	GAATGC	3 cut(s)	85, 603, 805
PflMI	CCANNNNNTGG	1 cut(s)	731
PinAI	ACCGGT	1 cut(s)	638
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
Ppu21I	YACGTR	1 cut(s)	1101
PsiI	TTATAA	1 cut(s)	96
Psp1406I	AACGTT	2 cut(s)	458, 561
Psp6I	CCWGG	2 cut(s)	510, 724
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	2 cut(s)	510, 724
PspN4I	GGNNCC	2 cut(s)	688, 1147
PspPI	GGNCC	3 cut(s)	248, 680, 722
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	537
RsaI	GTAC	4 cut(s)	203, 831, 1103, 1161
RsaNI	GTAC	4 cut(s)	202, 830, 1102, 1160
RseI	CAYNNNNRTG	3 cut(s)	608, 896, 1126
SaqAI	TTAA	4 cut(s)	56, 348, 564, 909
Sau3AI	GATC	7 cut(s)	9, 129, 336, 351, 528, 815, 928
Sau96I	GGNCC	3 cut(s)	248, 680, 722
ScaI	AGTACT	1 cut(s)	1161
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	3 cut(s)	512, 684, 726
SduI	GDGCHC	2 cut(s)	620, 689
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	556
SgrAI	CRCCGGYG	1 cut(s)	638
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	3 cut(s)	608, 896, 1126
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SnaBI	TACGTA	1 cut(s)	1101
SphI	GCATGC	1 cut(s)	177
Sse9I	AATT	2 cut(s)	463, 1079
SsiI	CCGC	3 cut(s)	87, 720, 1028
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	447, 752
StyD4I	CCNGG	3 cut(s)	510, 682, 724
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	6 cut(s)	207, 461, 564, 794, 1019, 1103
TaqI	TCGA	6 cut(s)	77, 384, 452, 556, 674, 927
TasI	AATT	2 cut(s)	463, 1079
TatI	WGTACW	1 cut(s)	1159
TauI	GCSGC	2 cut(s)	89, 723
Tru1I	TTAA	4 cut(s)	56, 348, 564, 909
Tru9I	TTAA	4 cut(s)	56, 348, 564, 909
TscAI	CASTG	5 cut(s)	26, 601, 817, 865, 1041
TseFI	GTSAC	4 cut(s)	787, 868, 991, 1036
TseI	GCWGC	9 cut(s)	83, 167, 170, 177, 233, 432, 443, 537, 1050
Tsp45I	GTSAC	4 cut(s)	787, 868, 991, 1036
TspDTI	ATGAA	6 cut(s)	119, 187, 334, 596, 719, 1116
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	5 cut(s)	26, 601, 817, 865, 1041
Van91I	CCANNNNNTGG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	680
XagI	CCTNNNNNAGG	1 cut(s)	1109
XceI	RCATGY	1 cut(s)	177
XspI	CTAG	2 cut(s)	447, 752
ZraI	GACGTC	1 cut(s)	1017
ZrmI	AGTACT	1 cut(s)	1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.