Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009066

Physical Location & Seq

Genomic Coordinates Reverse (-)

133345 .. 135140

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCAATGATCAATCACTGCGCAGGCGGAGGTCTACTACTTATCTCCCTCTGCTTCTTCATGTTCGGGTTATCGGATGCAGCAGCAACTTATAATGTGATGAAATACGGTGCAAAAGCGGACGGCAAATCAGACTCAACCCAAGCGTTTGTCAAGACATGGGCAGCAGCATGCAGCTCTAATCAGACAGCCACCATGTACGTCCCCAAAGGAAGGTTCTTGCTAAAAGCTGCAGTGTTCAGAGGCCCTTGCAAGAGTAGAATTAAAGTTCAGATATACGGATCCTTGATTGCCCCTACTGATTATTGGGCGCTAGGAAACTCCGGCTACTGGATCCTATTCATTAAGGTCAATCGACTCGCAGTTTTCGGTGGTACACTGGACGGCAAAGGAGCTGGCTTTTGGGCTTGCAGGAAAGCCGGAAAGAGCTGCCCTGTTGGAGCTAGGTCGATAACGTTCAATTGGGCAAATGACGTTGTGATAAGTGGTTTAGTGTCGATCAACAGTCAGCAAACTCATCTTGTGATCAACAGCTGCAACAATGTGGTGGTCAGAAACGTTAAGTTGGTTGCTCCGGCTGACAGCCCCAATACTGATGGCATTCATGTGCAGAGCTCAACTGGTGTTACTATCACCGGCGCAACCTTGCAAACCGGAGACGATTGTGTATCAATTGGAGCTGGCACCAAAAACCTCTACATGAGTAACATCAAGTGCGGCCCAGGACATGGCGTAAGCATTGGTAGTCTAGGCAAGGAAGCGAACGAAGCTGGGGTCCAAAATGTGACGTTAACGAATGCAGTTTTCAGTGGATCGGACAATGGAGTGCGAATAAAGACATGGGCCAGGCCCAGCAACGGGTTTGTGACCAACGTTCTCTTCCGGAACATCATGATGAGGAATGTCGAGAACCCCATCATCATCGATCAGAACTACTGCCCAAATAACAACGGTTGCCCTAACCAGACTTCTGGTGTAAAGATTAGTCAAGTGACATACAAGAACATACAAGGGACGTCGGCAACGGCGGAGGCAGTAACATTTGATTGCAGCCCAAGCAATCCGTGCAGAGGGATTAGATTGGAAGACATCAAGCTCACATACATGAATCAATTAGCCACATCTTCATGCAAGAACATCGATGGAACCAGCACGGGAGTGCTCATGCCCCAGAGTTGCGTCGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

397

Amino Acids

41.93

Weight (kDa)

9.17

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	32 - 100	1.6e-08	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	58 - 381	1.4e-93	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43890
fragaria_vesca	FvH4_1g00260 FvH4_7g26550
malus_domestica	MD00G1087800.v1.1 MD15G1143800.v1.1
prunus_persica	Prupe.7G269400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084561 RchiOBHm_Chr2g0149621
rosa_laevigata	RLG00000015627 RLG00000020431
rosa_multiflora	Rmu_sc0006867.1_g000032
rosa_roxburghii	Rroxscaffold_2G00097870 Rroxscaffold_2G00155960
rosa_rugosa	Rorug01G0455100 Rorug02G0413500
rosa_samantha	Rh2BG485700 Rh2CG003200 Rh2DG003200
rosa_wichuraiana	Rw2G000280 Rw2G038630 Rw7G041010 Rw7G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AatII	GACGTC	1 cut(s)	1019
Acc16I	TGCGCA	1 cut(s)	22
AccB1I	GGYRCC	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	34
AccIII	TCCGGA	1 cut(s)	882
AciI	CCGC	4 cut(s)	27, 119, 717, 1028
AclI	AACGTT	3 cut(s)	455, 558, 873
AclWI	GGATC	5 cut(s)	276, 289, 328, 341, 820
AcyI	GRCGYC	1 cut(s)	1016
AfaI	GTAC	2 cut(s)	200, 376
AfiI	CCNNNNNNNGG	6 cut(s)	213, 330, 728, 857, 858, 1070
AgsI	TTSAA	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	721, 845
AjuI	GAANNNNNNNTTGG	4 cut(s)	200, 232, 863, 895
AleI	CACNNNNGTG	1 cut(s)	1157
Alw21I	GWGCWC	2 cut(s)	617, 1164
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	5 cut(s)	276, 289, 328, 341, 820
Aor13HI	TCCGGA	1 cut(s)	882
AoxI	GGCC	4 cut(s)	244, 718, 843, 848
ApeKI	GCWGC	9 cut(s)	80, 83, 164, 167, 174, 230, 429, 534, 1050
ArsI	GACNNNNNNTTYG	2 cut(s)	759, 791
AspLEI	GCGC	3 cut(s)	23, 313, 641
AspS9I	GGNCC	5 cut(s)	245, 719, 775, 843, 849
AsuHPI	GGTGA	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	775
BamHI	GGATCC	2 cut(s)	281, 333
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	1092
Bbv12I	GWGCWC	2 cut(s)	617, 1164
BbvI	GCAGC	9 cut(s)	92, 95, 176, 179, 186, 217, 416, 521, 1062
BccI	CCATC	3 cut(s)	590, 923, 1136
BceAI	ACGGC	3 cut(s)	139, 400, 1041
BcgI	CGANNNNNNTGC	2 cut(s)	1120, 1154
BciT130I	CCWGG	2 cut(s)	723, 847
BclI	TGATCA	2 cut(s)	9, 525
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	3 cut(s)	314, 444, 749
BfmI	CTRYAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	314
Bme1390I	CCNGG	2 cut(s)	723, 847
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	5 cut(s)	245, 719, 775, 843, 849
BmiI	GGNNCC	5 cut(s)	283, 335, 685, 776, 1147
BmrFI	CCNGG	2 cut(s)	723, 847
BmsI	GCATC	1 cut(s)	67
BpiI	GAAGAC	1 cut(s)	1092
Bsa29I	ATCGAT	2 cut(s)	924, 1140
BsaHI	GRCGYC	1 cut(s)	1016
BsaJI	CCNNGG	1 cut(s)	721
BsaWI	WCCGGW	2 cut(s)	653, 882
Bsc4I	CCNNNNNNNGG	6 cut(s)	213, 330, 728, 857, 858, 1070
Bse118I	RCCGGY	1 cut(s)	635
Bse1I	ACTGG	3 cut(s)	335, 384, 625
Bse3DI	GCAATG	1 cut(s)	12
BseAI	TCCGGA	1 cut(s)	882
BseBI	CCWGG	2 cut(s)	723, 847
BseCI	ATCGAT	2 cut(s)	924, 1140
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	6 cut(s)	213, 330, 728, 857, 858, 1070
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	3 cut(s)	335, 384, 625
BseXI	GCAGC	9 cut(s)	92, 95, 176, 179, 186, 217, 416, 521, 1062
BseYI	CCCAGC	2 cut(s)	770, 851
BsgI	GTGCAG	2 cut(s)	629, 1087
BshFI	GGCC	4 cut(s)	246, 720, 845, 850
BshNI	GGYRCC	1 cut(s)	683
BshVI	ATCGAT	2 cut(s)	924, 1140
BsiHKAI	GWGCWC	2 cut(s)	617, 1164
BsiSI	CCGG	6 cut(s)	324, 420, 575, 636, 654, 883
BslFI	GGGAC	2 cut(s)	188, 1027
BslI	CCNNNNNNNGG	6 cut(s)	213, 330, 728, 857, 858, 1070
BsmAI	GTCTC	1 cut(s)	651
BsmBI	CGTCTC	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	188, 1027
BsmI	GAATGC	2 cut(s)	600, 802
BsnI	GGCC	4 cut(s)	246, 720, 845, 850
Bsp1286I	GDGCHC	2 cut(s)	617, 1164
Bsp13I	TCCGGA	1 cut(s)	882
Bsp143I	GATC	7 cut(s)	9, 281, 333, 498, 525, 812, 925
BspACI	CCGC	4 cut(s)	27, 119, 717, 1028
BspANI	GGCC	4 cut(s)	246, 720, 845, 850
BspDI	ATCGAT	2 cut(s)	924, 1140
BspEI	TCCGGA	1 cut(s)	882
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	5 cut(s)	283, 335, 685, 776, 1147
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	5 cut(s)	276, 289, 328, 341, 820
BspT107I	GGYRCC	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	635
BsrI	ACTGG	3 cut(s)	335, 384, 625
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	1 cut(s)	721
BssMI	GATC	7 cut(s)	9, 281, 333, 498, 525, 812, 925
BssNI	GRCGYC	1 cut(s)	1016
Bst2UI	CCWGG	2 cut(s)	723, 847
Bst4CI	ACNGT	3 cut(s)	110, 506, 953
Bst6I	CTCTTC	1 cut(s)	884
BstACI	GRCGYC	1 cut(s)	1016
BstAPI	GCANNNNNTGC	1 cut(s)	1065
BstC8I	GCNNGC	5 cut(s)	25, 172, 397, 409, 682
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	3 cut(s)	23, 313, 641
BstKTI	GATC	7 cut(s)	12, 284, 336, 501, 528, 815, 928
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	7 cut(s)	9, 281, 333, 498, 525, 812, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	767, 1056, 1065
BstNI	CCWGG	2 cut(s)	723, 847
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	2 cut(s)	721, 845
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	9 cut(s)	92, 95, 176, 179, 186, 217, 416, 521, 1062
BstV2I	GAAGAC	1 cut(s)	1092
BstX2I	RGATCY	2 cut(s)	281, 333
BstXI	CCANNNNNNTGG	1 cut(s)	971
BstYI	RGATCY	2 cut(s)	281, 333
Bsu15I	ATCGAT	2 cut(s)	924, 1140
BsuRI	GGCC	4 cut(s)	246, 720, 845, 850
BsuTUI	ATCGAT	2 cut(s)	924, 1140
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	2 cut(s)	16, 240
BtsIMutI	CAGTG	4 cut(s)	16, 240, 377, 814
Cac8I	GCNNGC	5 cut(s)	25, 172, 397, 409, 682
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	3 cut(s)	23, 313, 641
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	5 cut(s)	245, 719, 775, 843, 849
ClaI	ATCGAT	2 cut(s)	924, 1140
CseI	GACGC	1 cut(s)	1168
Csp6I	GTAC	2 cut(s)	199, 375
CviQI	GTAC	2 cut(s)	199, 375
DpnI	GATC	7 cut(s)	11, 283, 335, 500, 527, 814, 927
DpnII	GATC	7 cut(s)	9, 281, 333, 498, 525, 812, 925
Eam1104I	CTCTTC	1 cut(s)	884
EarI	CTCTTC	1 cut(s)	884
EciI	GGCGGA	2 cut(s)	42, 1043
Ecl136II	GAGCTC	1 cut(s)	615
Eco24I	GRGCYC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	775
Eco53kI	GAGCTC	1 cut(s)	615
EcoICRI	GAGCTC	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	721, 845
EcoT38I	GRGCYC	1 cut(s)	617
Esp3I	CGTCTC	1 cut(s)	651
FaqI	GGGAC	2 cut(s)	188, 1027
FbaI	TGATCA	2 cut(s)	9, 525
FblI	GTMKAC	1 cut(s)	34
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	617
FspBI	CTAG	3 cut(s)	314, 444, 749
FspI	TGCGCA	1 cut(s)	22
GlaI	GCGC	3 cut(s)	22, 312, 640
GsaI	CCCAGC	2 cut(s)	774, 855
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	4 cut(s)	246, 720, 845, 850
HapII	CCGG	6 cut(s)	324, 420, 575, 636, 654, 883
HgaI	GACGC	1 cut(s)	1168
HhaI	GCGC	3 cut(s)	23, 313, 641
Hin1I	GRCGYC	1 cut(s)	1016
Hin6I	GCGC	3 cut(s)	21, 311, 639
HinP1I	GCGC	3 cut(s)	21, 311, 639
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HinfI	GANTC	3 cut(s)	134, 357, 1108
HpaI	GTTAAC	1 cut(s)	792
HpaII	CCGG	6 cut(s)	324, 420, 575, 636, 654, 883
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	3 cut(s)	35, 377, 792
Hpy188I	TCNGA	8 cut(s)	76, 133, 186, 242, 273, 554, 817, 930
Hpy188III	TCNNGA	4 cut(s)	154, 883, 892, 907
Hpy8I	GTNNAC	3 cut(s)	35, 377, 792
Hpy99I	CGWCG	2 cut(s)	1021, 1184
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	3 cut(s)	110, 506, 953
HpyCH4IV	ACGT	7 cut(s)	201, 455, 474, 558, 788, 873, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	767, 1056, 1065
HpySE526I	ACGT	7 cut(s)	201, 455, 474, 558, 788, 873, 1016
Hsp92I	GRCGYC	1 cut(s)	1016
HspAI	GCGC	3 cut(s)	21, 311, 639
Kpn2I	TCCGGA	1 cut(s)	882
Ksp22I	TGATCA	2 cut(s)	9, 525
KspAI	GTTAAC	1 cut(s)	792
Kzo9I	GATC	7 cut(s)	9, 281, 333, 498, 525, 812, 925
LmnI	GCTCC	4 cut(s)	392, 440, 577, 677
Lsp1109I	GCAGC	9 cut(s)	92, 95, 176, 179, 186, 217, 416, 521, 1062
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	3 cut(s)	314, 444, 749
MaeII	ACGT	7 cut(s)	201, 455, 474, 558, 788, 873, 1016
MaeIII	GTNAC	6 cut(s)	625, 704, 784, 865, 991, 1036
MalI	GATC	7 cut(s)	11, 283, 335, 500, 527, 814, 927
MboI	GATC	7 cut(s)	9, 281, 333, 498, 525, 812, 925
MboII	GAAGA	4 cut(s)	49, 871, 1097, 1116
MfeI	CAATTG	2 cut(s)	460, 672
MflI	RGATCY	2 cut(s)	281, 333
MhlI	GDGCHC	2 cut(s)	617, 1164
MluCI	AATT	4 cut(s)	261, 460, 672, 1112
MlyI	GAGTC	2 cut(s)	128, 351
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	7 cut(s)	23, 59, 236, 704, 891, 1024, 1064
MroI	TCCGGA	1 cut(s)	882
MseI	TTAA	4 cut(s)	264, 345, 561, 791
MslI	CAYNNNNRTG	5 cut(s)	605, 893, 1103, 1126, 1157
MspA1I	CMGCKG	1 cut(s)	534
MspI	CCGG	6 cut(s)	324, 420, 575, 636, 654, 883
MspR9I	CCNGG	2 cut(s)	723, 847
MunI	CAATTG	2 cut(s)	460, 672
Mva1269I	GAATGC	2 cut(s)	600, 802
MvaI	CCWGG	2 cut(s)	723, 847
MwoI	GCNNNNNNNGC	3 cut(s)	767, 1056, 1065
NdeII	GATC	7 cut(s)	9, 281, 333, 498, 525, 812, 925
NlaIV	GGNNCC	5 cut(s)	283, 335, 685, 776, 1147
NmuCI	GTSAC	3 cut(s)	784, 865, 991
NsbI	TGCGCA	1 cut(s)	22
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	1157
PaeI	GCATGC	1 cut(s)	174
PagI	TCATGA	1 cut(s)	891
PctI	GAATGC	2 cut(s)	600, 802
PfeI	GAWTC	1 cut(s)	1108
PflMI	CCANNNNNTGG	1 cut(s)	728
PleI	GAGTC	2 cut(s)	128, 351
PpsI	GAGTC	2 cut(s)	128, 351
PsiI	TTATAA	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	617
Psp1406I	AACGTT	3 cut(s)	455, 558, 873
Psp6I	CCWGG	2 cut(s)	721, 845
PspFI	CCCAGC	2 cut(s)	770, 851
PspGI	CCWGG	2 cut(s)	721, 845
PspN4I	GGNNCC	5 cut(s)	283, 335, 685, 776, 1147
PspPI	GGNCC	5 cut(s)	245, 719, 775, 843, 849
PstI	CTGCAG	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	281, 333
PvuII	CAGCTG	1 cut(s)	534
RsaI	GTAC	2 cut(s)	200, 376
RsaNI	GTAC	2 cut(s)	199, 375
RseI	CAYNNNNRTG	5 cut(s)	605, 893, 1103, 1126, 1157
SacI	GAGCTC	1 cut(s)	617
SaqAI	TTAA	4 cut(s)	264, 345, 561, 791
Sau3AI	GATC	7 cut(s)	9, 281, 333, 498, 525, 812, 925
Sau96I	GGNCC	5 cut(s)	245, 719, 775, 843, 849
SchI	GAGTC	2 cut(s)	128, 351
ScrFI	CCNGG	2 cut(s)	723, 847
SduI	GDGCHC	2 cut(s)	617, 1164
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	231
SgrAI	CRCCGGYG	1 cut(s)	635
SinI	GGWCC	1 cut(s)	775
SmiMI	CAYNNNNRTG	5 cut(s)	605, 893, 1103, 1126, 1157
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	4 cut(s)	261, 460, 672, 1112
SsiI	CCGC	4 cut(s)	27, 119, 717, 1028
SspMI	CTAG	3 cut(s)	314, 444, 749
SstI	GAGCTC	1 cut(s)	617
StyD4I	CCNGG	2 cut(s)	721, 845
TaaI	ACNGT	3 cut(s)	110, 506, 953
TaiI	ACGT	7 cut(s)	204, 458, 477, 561, 791, 876, 1019
TaqI	TCGA	6 cut(s)	355, 449, 497, 906, 924, 1140
TasI	AATT	4 cut(s)	261, 460, 672, 1112
TauI	GCSGC	1 cut(s)	720
TfiI	GAWTC	1 cut(s)	1108
Tru1I	TTAA	4 cut(s)	264, 345, 561, 791
Tru9I	TTAA	4 cut(s)	264, 345, 561, 791
TscAI	CASTG	4 cut(s)	23, 240, 384, 814
TseFI	GTSAC	3 cut(s)	784, 865, 991
TseI	GCWGC	9 cut(s)	80, 83, 164, 167, 174, 230, 429, 534, 1050
Tsp45I	GTSAC	3 cut(s)	784, 865, 991
TspDTI	ATGAA	6 cut(s)	49, 116, 331, 593, 1116, 1121
TspGWI	ACGGA	2 cut(s)	294, 1053
TspRI	CASTG	4 cut(s)	23, 240, 384, 814
Van91I	CCANNNNNTGG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	775
XceI	RCATGY	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	3 cut(s)	314, 444, 749
ZraI	GACGTC	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.