Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009066

Physical Location & Seq

Genomic Coordinates Forward (+)

22133289 .. 22134974

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G269400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGCTTATAGAAACATCTGCAACTGCAACAATTATTGTGTAGTAGTAGTTGTGTTATTTATGGGCGTACTATCATCCAATGCAGCAGCAGCAGCTAGCAATAGTTTTAATGTGATGAAGTTTGGTGCAAAACCAGATGGGAAAACAGATTCCACCCAAGCATTCGTGAAGACATGGGCATCAGCATGCAGCTCTGCTTCTGGTCAAGCCAATGCTGTCATGTATGTCCCCAAAGGAAGGTTCTTGATTAAGGCTGTGGTGTTCAGAGGTCCTTGCAAGACTAGAAGAGTTACAGTTCGGATAGATGGAACCCTCGTGGCCCCCACAGACTATTGGGCTTTGGGCAACTCAGGCTACTGGATTTTATTCATTAAGGTCACCGGAGTTACAGTGGTGGGTGGTTCCCTCGATGCCAAGGGTGCTGCATTTTGGGCTTGCAGGAGATCTGGGAAGACTTGCCCTGTTGGAGCTAGGTCGATAACGTTCAATTGGGCAAACAACATTGTGATCACTGGTTTAACATCCATCAACAGTCAGCAAACTCACCTTGTAATCAACAGCTGCAACAACGTGGTTGTTCGAAACGTGAAGCTGATTGCTCCGAGTGAAAGCCCCAACACAGACGGCATTCATGTGCAGAGCTCAGCTGGTGTAACCATCACCGGCAGCATCTTGCAAACTGGAGACGATTGCATATCAATTGGTCCTGGCACCACAAACCTCCATATCAGTAACATCAAGTGCGGCCCAGGCCATGGCGTAAGCATTGGAAGTCTAGGCAAGGAGCTGAAGGAAGATGGTGTACAAAATGTGACGCTAACAAATGCAGTTTTCAGTGGATCAGACAATGGAGTACGAATAAAGTCATGGGCTAGGCCCAGCACTGGCTTCGTAAGGAACATTCTCTTCCAAAACATCATCATGAGGAACGTTGAAAACCCGATCATCATTGATCAGAACTATTGCCCAAATAACCAAGCCTGTCCTAATCAGAGTTCGGGTGTGAAGATTAGTCAAGTGACGTACAGAAATATACAGGGGACGTCGGCAACGGCAGAGGCAGTAACATTTGACTGCAGCCCTAGTCATCCATGTACAGGGATTAGATTGCAAAACATTAAGCTTACATATATGAACAGGGATGCCACATCATCATGTAAGAACATTGACGGAACCAGCAATGGACTACTGGTGCCTGAAAGTTGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

404

Amino Acids

42.82

Weight (kDa)

9.24

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43890
fragaria_vesca	FvH4_1g00260 FvH4_7g26550
malus_domestica	MD00G1087800.v1.1 MD15G1143800.v1.1
prunus_persica	Prupe.7G269400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084561 RchiOBHm_Chr2g0149621
rosa_laevigata	RLG00000015627 RLG00000020431
rosa_multiflora	Rmu_sc0006867.1_g000032
rosa_roxburghii	Rroxscaffold_2G00097870 Rroxscaffold_2G00155960
rosa_rugosa	Rorug01G0455100 Rorug02G0413500
rosa_samantha	Rh2BG485700 Rh2CG003200 Rh2DG003200
rosa_wichuraiana	Rw2G000280 Rw2G038630 Rw7G041010 Rw7G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1046
AccB1I	GGYRCC	2 cut(s)	710, 1192
AccB7I	CCANNNNNTGG	1 cut(s)	755
AciI	CCGC	1 cut(s)	744
AclI	AACGTT	2 cut(s)	482, 930
AclWI	GGATC	1 cut(s)	847
AcuI	CTGAAG	1 cut(s)	809
AcyI	GRCGYC	1 cut(s)	1043
AfaI	GTAC	5 cut(s)	69, 804, 855, 1025, 1096
AfiI	CCNNNNNNNGG	4 cut(s)	237, 755, 884, 1097
AgsI	TTSAA	2 cut(s)	487, 935
AjnI	CCWGG	2 cut(s)	706, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	9 cut(s)	95, 192, 470, 561, 592, 642, 647, 787, 1123
AluI	AGCT	9 cut(s)	95, 192, 470, 561, 592, 642, 647, 787, 1123
Alw21I	GWGCWC	1 cut(s)	644
Alw26I	GTCTC	1 cut(s)	678
AlwI	GGATC	1 cut(s)	847
AoxI	GGCC	4 cut(s)	318, 745, 751, 875
ApeKI	GCWGC	9 cut(s)	83, 86, 89, 92, 189, 422, 561, 666, 1077
AspS9I	GGNCC	5 cut(s)	269, 319, 704, 746, 876
AsuHPI	GGTGA	3 cut(s)	370, 536, 652
AsuII	TTCGAA	1 cut(s)	580
AsuNHI	GCTAGC	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	269, 704
BanI	GGYRCC	2 cut(s)	710, 1192
BanII	GRGCYC	1 cut(s)	644
BarI	GAAGNNNNNNTAC	2 cut(s)	786, 818
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	2 cut(s)	176, 458
Bbv12I	GWGCWC	1 cut(s)	644
BbvI	GCAGC	9 cut(s)	95, 98, 101, 104, 201, 409, 548, 678, 1089
BccI	CCATC	5 cut(s)	131, 299, 533, 665, 791
BceAI	ACGGC	2 cut(s)	640, 1068
BcgI	CGANNNNNNTGC	2 cut(s)	871, 905
BciT130I	CCWGG	2 cut(s)	708, 750
BclI	TGATCA	2 cut(s)	507, 952
BcoDI	GTCTC	1 cut(s)	678
BfaI	CTAG	6 cut(s)	96, 282, 471, 776, 873, 1083
BfmI	CTRYAG	1 cut(s)	1075
BglII	AGATCT	1 cut(s)	443
BlpI	GCTNAGC	1 cut(s)	643
Bme1390I	CCNGG	2 cut(s)	708, 750
Bme18I	GGWCC	2 cut(s)	269, 704
BmgT120I	GGNCC	5 cut(s)	269, 319, 704, 746, 876
BmiI	GGNNCC	6 cut(s)	310, 321, 403, 712, 1174, 1194
BmrFI	CCNGG	2 cut(s)	708, 750
BmsI	GCATC	4 cut(s)	188, 400, 678, 1132
BmtI	GCTAGC	1 cut(s)	99
BpiI	GAAGAC	2 cut(s)	176, 458
BpmI	CTGGAG	1 cut(s)	702
Bpu1102I	GCTNAGC	1 cut(s)	643
Bpu14I	TTCGAA	1 cut(s)	580
BsaHI	GRCGYC	1 cut(s)	1043
BsaJI	CCNNGG	3 cut(s)	414, 748, 754
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	4 cut(s)	237, 755, 884, 1097
Bse118I	RCCGGY	1 cut(s)	662
Bse1I	ACTGG	5 cut(s)	362, 517, 685, 889, 1194
Bse3DI	GCAATG	1 cut(s)	1186
BseBI	CCWGG	2 cut(s)	708, 750
BseDI	CCNNGG	3 cut(s)	414, 748, 754
BseGI	GGATG	4 cut(s)	74, 521, 1087, 1147
BseLI	CCNNNNNNNGG	4 cut(s)	237, 755, 884, 1097
BseMI	GCAATG	1 cut(s)	1186
BseMII	CTCAG	2 cut(s)	363, 657
BseNI	ACTGG	5 cut(s)	362, 517, 685, 889, 1194
BseXI	GCAGC	9 cut(s)	95, 98, 101, 104, 201, 409, 548, 678, 1089
BseYI	CCCAGC	1 cut(s)	878
BsgI	GTGCAG	1 cut(s)	656
BshFI	GGCC	4 cut(s)	320, 747, 753, 877
BshNI	GGYRCC	2 cut(s)	710, 1192
BsiHKAI	GWGCWC	1 cut(s)	644
BsiSI	CCGG	2 cut(s)	381, 663
BslFI	GGGAC	2 cut(s)	212, 1054
BslI	CCNNNNNNNGG	4 cut(s)	237, 755, 884, 1097
BsmAI	GTCTC	1 cut(s)	678
BsmBI	CGTCTC	1 cut(s)	678
BsmFI	GGGAC	2 cut(s)	212, 1054
BsmI	GAATGC	2 cut(s)	161, 627
BsnI	GGCC	4 cut(s)	320, 747, 753, 877
Bsp119I	TTCGAA	1 cut(s)	580
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp1407I	TGTACA	2 cut(s)	802, 1094
Bsp143I	GATC	5 cut(s)	443, 507, 839, 942, 952
Bsp1720I	GCTNAGC	1 cut(s)	643
Bsp19I	CCATGG	1 cut(s)	754
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	4 cut(s)	320, 747, 753, 877
BspCNI	CTCAG	2 cut(s)	362, 656
BspHI	TCATGA	1 cut(s)	921
BspLI	GGNNCC	6 cut(s)	310, 321, 403, 712, 1174, 1194
BspMAI	CTGCAG	1 cut(s)	1079
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	847
BspT104I	TTCGAA	1 cut(s)	580
BspT107I	GGYRCC	2 cut(s)	710, 1192
BsrDI	GCAATG	1 cut(s)	1186
BsrFI	RCCGGY	1 cut(s)	662
BsrGI	TGTACA	2 cut(s)	802, 1094
BsrI	ACTGG	5 cut(s)	362, 517, 685, 889, 1194
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	3 cut(s)	414, 748, 754
BssMI	GATC	5 cut(s)	443, 507, 839, 942, 952
BssNI	GRCGYC	1 cut(s)	1043
BssSI	CACGAG	1 cut(s)	314
BssT1I	CCWWGG	2 cut(s)	414, 754
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	708, 750
Bst4CI	ACNGT	3 cut(s)	295, 391, 533
Bst6I	CTCTTC	2 cut(s)	280, 911
BstACI	GRCGYC	1 cut(s)	1043
BstAUI	TGTACA	2 cut(s)	802, 1094
BstBI	TTCGAA	1 cut(s)	580
BstC8I	GCNNGC	3 cut(s)	97, 187, 436
BstDEI	CTNAG	2 cut(s)	349, 643
BstDSI	CCRYGG	1 cut(s)	754
BstEII	GGTNACC	1 cut(s)	376
BstF5I	GGATG	4 cut(s)	74, 521, 1087, 1147
BstKTI	GATC	5 cut(s)	446, 510, 842, 945, 955
BstMAI	GTCTC	1 cut(s)	678
BstMBI	GATC	5 cut(s)	443, 507, 839, 942, 952
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 92, 351, 419, 431, 750
BstNI	CCWGG	2 cut(s)	708, 750
BstNSI	RCATGY	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	706, 748
BstSFI	CTRYAG	1 cut(s)	1075
BstV1I	GCAGC	9 cut(s)	95, 98, 101, 104, 201, 409, 548, 678, 1089
BstV2I	GAAGAC	2 cut(s)	176, 458
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BsuRI	GGCC	4 cut(s)	320, 747, 753, 877
BtgI	CCRYGG	1 cut(s)	754
BtsCI	GGATG	4 cut(s)	74, 521, 1087, 1147
BtsIMutI	CAGTG	4 cut(s)	396, 510, 841, 882
Cac8I	GCNNGC	3 cut(s)	97, 187, 436
CciI	TCATGA	1 cut(s)	921
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	5 cut(s)	269, 319, 704, 746, 876
CseI	GACGC	1 cut(s)	823
Csp6I	GTAC	5 cut(s)	68, 803, 854, 1024, 1095
CviAII	CATG	9 cut(s)	174, 186, 220, 632, 755, 867, 922, 1092, 1155
CviQI	GTAC	5 cut(s)	68, 803, 854, 1024, 1095
DdeI	CTNAG	2 cut(s)	349, 643
DpnI	GATC	5 cut(s)	445, 509, 841, 944, 954
DpnII	GATC	5 cut(s)	443, 507, 839, 942, 952
Eam1104I	CTCTTC	2 cut(s)	280, 911
EarI	CTCTTC	2 cut(s)	280, 911
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	2 cut(s)	414, 754
Eco24I	GRGCYC	1 cut(s)	644
Eco47I	GGWCC	2 cut(s)	269, 704
Eco53kI	GAGCTC	1 cut(s)	642
Eco57I	CTGAAG	1 cut(s)	809
Eco91I	GGTNACC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	706, 748
EcoT14I	CCWWGG	2 cut(s)	414, 754
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	2 cut(s)	414, 754
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	9 cut(s)	177, 189, 223, 635, 758, 870, 925, 1095, 1158
FaqI	GGGAC	2 cut(s)	212, 1054
FatI	CATG	9 cut(s)	173, 185, 219, 631, 754, 866, 921, 1091, 1154
FbaI	TGATCA	2 cut(s)	507, 952
FokI	GGATG	4 cut(s)	61, 508, 1074, 1154
FriOI	GRGCYC	1 cut(s)	644
FspBI	CTAG	6 cut(s)	96, 282, 471, 776, 873, 1083
GsaI	CCCAGC	1 cut(s)	882
GsuI	CTGGAG	1 cut(s)	702
HaeIII	GGCC	4 cut(s)	320, 747, 753, 877
HapII	CCGG	2 cut(s)	381, 663
HgaI	GACGC	1 cut(s)	823
Hin1I	GRCGYC	1 cut(s)	1043
Hin1II	CATG	9 cut(s)	177, 189, 223, 635, 758, 870, 925, 1095, 1158
HindIII	AAGCTT	1 cut(s)	1121
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	2 cut(s)	381, 663
HphI	GGTGA	3 cut(s)	370, 536, 652
Hpy166II	GTNNAC	1 cut(s)	803
Hpy188I	TCNGA	6 cut(s)	266, 300, 603, 844, 957, 993
Hpy188III	TCNNGA	3 cut(s)	166, 244, 922
Hpy8I	GTNNAC	1 cut(s)	803
Hpy99I	CGWCG	1 cut(s)	1048
HpyAV	CCTTC	2 cut(s)	231, 784
HpyCH4III	ACNGT	3 cut(s)	295, 391, 533
HpyCH4IV	ACGT	6 cut(s)	482, 570, 585, 930, 1022, 1043
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 92, 351, 419, 431, 750
HpyF3I	CTNAG	2 cut(s)	349, 643
HpySE526I	ACGT	6 cut(s)	482, 570, 585, 930, 1022, 1043
Hsp92I	GRCGYC	1 cut(s)	1043
Hsp92II	CATG	9 cut(s)	177, 189, 223, 635, 758, 870, 925, 1095, 1158
Ksp22I	TGATCA	2 cut(s)	507, 952
Kzo9I	GATC	5 cut(s)	443, 507, 839, 942, 952
LmnI	GCTCC	3 cut(s)	467, 604, 784
Lsp1109I	GCAGC	9 cut(s)	95, 98, 101, 104, 201, 409, 548, 678, 1089
LweI	GCATC	4 cut(s)	188, 400, 678, 1132
MaeI	CTAG	6 cut(s)	96, 282, 471, 776, 873, 1083
MaeII	ACGT	6 cut(s)	482, 570, 585, 930, 1022, 1043
MaeIII	GTNAC	8 cut(s)	289, 376, 385, 652, 731, 811, 1018, 1063
MalI	GATC	5 cut(s)	445, 509, 841, 944, 954
MboI	GATC	5 cut(s)	443, 507, 839, 942, 952
MboII	GAAGA	6 cut(s)	181, 297, 463, 806, 898, 1018
MfeI	CAATTG	2 cut(s)	487, 699
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	3 cut(s)	31, 487, 699
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	6 cut(s)	260, 323, 416, 731, 918, 1051
MseI	TTAA	5 cut(s)	108, 249, 372, 518, 1119
MslI	CAYNNNNRTG	4 cut(s)	184, 632, 920, 1153
MspA1I	CMGCKG	2 cut(s)	561, 647
MspI	CCGG	2 cut(s)	381, 663
MspR9I	CCNGG	2 cut(s)	708, 750
MunI	CAATTG	2 cut(s)	487, 699
Mva1269I	GAATGC	2 cut(s)	161, 627
MvaI	CCWGG	2 cut(s)	708, 750
MwoI	GCNNNNNNNGC	6 cut(s)	89, 92, 351, 419, 431, 750
NcoI	CCATGG	1 cut(s)	754
NdeII	GATC	5 cut(s)	443, 507, 839, 942, 952
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	9 cut(s)	177, 189, 223, 635, 758, 870, 925, 1095, 1158
NlaIV	GGNNCC	6 cut(s)	310, 321, 403, 712, 1174, 1194
NmuCI	GTSAC	3 cut(s)	376, 811, 1018
NspI	RCATGY	1 cut(s)	189
NspV	TTCGAA	1 cut(s)	580
PaeI	GCATGC	1 cut(s)	189
PagI	TCATGA	1 cut(s)	921
PctI	GAATGC	2 cut(s)	161, 627
PfeI	GAWTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	755
PpuMI	RGGWCCY	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	644
Psp1406I	AACGTT	2 cut(s)	482, 930
Psp5II	RGGWCCY	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	706, 748
PspEI	GGTNACC	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	878
PspGI	CCWGG	2 cut(s)	706, 748
PspN4I	GGNNCC	6 cut(s)	310, 321, 403, 712, 1174, 1194
PspPI	GGNCC	5 cut(s)	269, 319, 704, 746, 876
PspPPI	RGGWCCY	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	1079
PsuI	RGATCY	1 cut(s)	443
PvuII	CAGCTG	2 cut(s)	561, 647
RsaI	GTAC	5 cut(s)	69, 804, 855, 1025, 1096
RsaNI	GTAC	5 cut(s)	68, 803, 854, 1024, 1095
RseI	CAYNNNNRTG	4 cut(s)	184, 632, 920, 1153
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	5 cut(s)	108, 249, 372, 518, 1119
Sau3AI	GATC	5 cut(s)	443, 507, 839, 942, 952
Sau96I	GGNCC	5 cut(s)	269, 319, 704, 746, 876
ScrFI	CCNGG	2 cut(s)	708, 750
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	4 cut(s)	188, 400, 678, 1132
SfcI	CTRYAG	1 cut(s)	1075
SfuI	TTCGAA	1 cut(s)	580
SinI	GGWCC	2 cut(s)	269, 704
SmiMI	CAYNNNNRTG	4 cut(s)	184, 632, 920, 1153
SphI	GCATGC	1 cut(s)	189
Sse9I	AATT	3 cut(s)	31, 487, 699
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	6 cut(s)	96, 282, 471, 776, 873, 1083
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	706, 748
StyI	CCWWGG	2 cut(s)	414, 754
TaaI	ACNGT	3 cut(s)	295, 391, 533
TaiI	ACGT	6 cut(s)	485, 573, 588, 933, 1025, 1046
TaqI	TCGA	3 cut(s)	408, 476, 580
TasI	AATT	3 cut(s)	31, 487, 699
TatI	WGTACW	2 cut(s)	802, 1094
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	5 cut(s)	108, 249, 372, 518, 1119
Tru9I	TTAA	5 cut(s)	108, 249, 372, 518, 1119
TscAI	CASTG	4 cut(s)	396, 517, 841, 889
TseFI	GTSAC	3 cut(s)	376, 811, 1018
TseI	GCWGC	9 cut(s)	83, 86, 89, 92, 189, 422, 561, 666, 1077
Tsp45I	GTSAC	3 cut(s)	376, 811, 1018
TspDTI	ATGAA	4 cut(s)	131, 358, 620, 1148
TspGWI	ACGGA	1 cut(s)	1185
TspRI	CASTG	4 cut(s)	396, 517, 841, 889
Van91I	CCANNNNNTGG	1 cut(s)	755
VpaK11BI	GGWCC	2 cut(s)	269, 704
XceI	RCATGY	1 cut(s)	189
XspI	CTAG	6 cut(s)	96, 282, 471, 776, 873, 1083
ZraI	GACGTC	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.