Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Reverse (-)

18419370 .. 18421110

Gene Structure 1741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTTCCACTTTCGTCTGCTCTCTACCAAATCCTTTCTTTGCTTTTCCGGTCAAAGCAACTACTCCTTCGACGGCTAACCATACGCTTCTCGGAAGTCGAAGAGGTTGTCTTAGAATCAAAGCGATTTCCACTAAATGGGAACCGACAAAGGTTGTTCCTCAGGCAGACAGAGTTCTTGTTCGTCTTGAAGATCTTCCTATTAAATCCTCAGGTGGAGTATTGTTGCCTAAAGCAGCTGTGAAGTTTGAGAGATACCTAACAGGAGAGATTATATCTGTTGGTTCTGAGGTTGGACAACAAGTTGGACCTGGAAAGAGGGTTTTGTTCTCTGATGTGAGCGCTTATGAGGTCGATTTGGGAACCGATGCTAGGCATTGCTTCTGTAAAGAGAGTGACTTGTTGGCCCTCGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

139

Amino Acids

15.05

Weight (kDa)

8.75

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	51 - 137	4.4e-15	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	138
AfeI	AGCGCT	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	138, 372
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	343
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	308, 406
AvaII	GGWCC	1 cut(s)	308
AxyI	CCTNAGG	2 cut(s)	162, 211
BbvI	GCAGC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	312
BfaI	CTAG	1 cut(s)	372
BfoI	RGCGCY	1 cut(s)	345
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	2 cut(s)	308, 406
BmiI	GGNNCC	2 cut(s)	144, 364
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	358
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 372
Bse21I	CCTNAGG	2 cut(s)	162, 211
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	138, 372
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	176, 225, 279
BseXI	GCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	2 cut(s)	138, 372
BsnI	GGCC	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	193
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	3 cut(s)	175, 224, 280
BspLI	GGNNCC	2 cut(s)	144, 364
BsrDI	GCAATG	1 cut(s)	376
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	97
BstDEI	CTNAG	4 cut(s)	113, 162, 211, 288
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	312
BstSCI	CCNGG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu36I	CCTNAGG	2 cut(s)	162, 211
BsuRI	GGCC	1 cut(s)	407
CfoI	GCGC	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	308, 406
CviJI	RGCY	4 cut(s)	5, 77, 239, 407
CviKI_1	RGCY	4 cut(s)	5, 77, 239, 407
DdeI	CTNAG	4 cut(s)	113, 162, 211, 288
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	308
Eco47III	AGCGCT	1 cut(s)	343
Eco81I	CCTNAGG	2 cut(s)	162, 211
EcoRII	CCWGG	1 cut(s)	310
FaiI	YATR	3 cut(s)	84, 275, 348
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	372
GlaI	GCGC	1 cut(s)	343
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	50
Hpy188I	TCNGA	3 cut(s)	95, 289, 334
Hpy188III	TCNNGA	1 cut(s)	188
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	78
HpyF3I	CTNAG	4 cut(s)	113, 162, 211, 288
HspAI	GCGC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	63, 149, 198, 249, 297, 324
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	3 cut(s)	114, 188, 203
MflI	RGATCY	1 cut(s)	193
MmeI	TCCRAC	2 cut(s)	274, 286
MnlI	CCTC	7 cut(s)	98, 171, 220, 283, 312, 343, 419
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	312
NdeII	GATC	1 cut(s)	193
NlaIV	GGNNCC	2 cut(s)	144, 364
NmuCI	GTSAC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	117
PflMI	CCANNNNNTGG	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	144, 364
PspPI	GGNCC	2 cut(s)	308, 406
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	2 cut(s)	308, 406
ScrFI	CCNGG	1 cut(s)	312
SetI	ASST	8 cut(s)	109, 156, 217, 241, 261, 294, 313, 354
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	310
TaqI	TCGA	3 cut(s)	71, 100, 354
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	308
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.