Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Reverse (-)

9607104 .. 9616809

Gene Structure 9706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1091300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTTCCACTTTCGTCACACTACCAACTCCTTTGCTGTACAAACCCAACACCGCTTCTCTGTCCAACAGCCAGAAGCTACTCCCAGGTCTGCGAAGAAATTCTTTGAGAGTCAACGCAATTAGCCAGAAATGGGAACCCGCCAAGGTGGTTCCGCAAGCTGACAGAGTGCTTATTCGTCTTGAGGAACTCCCTCAGAAATCAGCTGGAGGAGTTTTGCTGCCCAAGTCAGCTGTTAAATTCGAACGCTATCTTATGGGAGAAATTCTCTCTGTTGGTGCTGACGTTGGGGAAGTGAAGGCCGGAAAAAAGGTTCTTTTTTCAGACATAAATGCATATGAGGTGGATTTGGGAATAGATGGCAGGCACTGCTTCTGCAAAGAGAGTGAATTGTTGGCCATAGTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

137

Amino Acids

14.89

Weight (kDa)

8.93

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	49 - 135	6.1e-15	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	54, 141, 155
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	3 cut(s)	100, 239, 264
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	85
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	79, 161, 206, 233
AluI	AGCT	4 cut(s)	79, 161, 206, 233
AlwNI	CAGNNNCTG	1 cut(s)	369
AoxI	GGCC	2 cut(s)	300, 396
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	3 cut(s)	100, 239, 264
Asp700I	GAANNNNTTC	1 cut(s)	100
AsuII	TTCGAA	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	87
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	138, 153
BmrFI	CCNGG	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
BpmI	CTGGAG	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	85, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	85, 144
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	2 cut(s)	302, 398
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	133
BsnI	GGCC	2 cut(s)	302, 398
Bsp119I	TTCGAA	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	39
BspACI	CCGC	3 cut(s)	54, 141, 155
BspANI	GGCC	2 cut(s)	302, 398
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	138, 153
BspT104I	TTCGAA	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	85, 144
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	159, 365
BstDEI	CTNAG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	302, 398
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	159, 365
CaiI	CAGNNNCTG	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	40
CviJI	RGCY	9 cut(s)	5, 72, 79, 126, 161, 206, 233, 302, 398
CviKI_1	RGCY	9 cut(s)	5, 72, 79, 126, 161, 206, 233, 302, 398
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	144
FaiI	YATR	5 cut(s)	257, 329, 337, 339, 401
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FauI	CCCGC	1 cut(s)	148
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	2 cut(s)	302, 398
HapII	CCGG	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	303
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	198, 325
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	335, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	285
LpnPI	CCDG	7 cut(s)	72, 86, 99, 140, 192, 316, 349
Lsp1109I	GCAGC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	5 cut(s)	100, 120, 239, 264, 389
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	178, 203, 204, 334
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	2 cut(s)	206, 233
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	369
NdeI	CATATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	138, 153
NmuCI	GTSAC	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	337
NspV	TTCGAA	1 cut(s)	243
PdmI	GAANNNNTTC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	138, 153
PstNI	CAGNNNCTG	1 cut(s)	369
PvuII	CAGCTG	2 cut(s)	206, 233
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	9 cut(s)	81, 91, 150, 163, 208, 235, 288, 315, 345
SfuI	TTCGAA	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	5 cut(s)	100, 120, 239, 264, 389
SsiI	CCGC	3 cut(s)	54, 141, 155
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	144
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	243, 405
TasI	AATT	5 cut(s)	100, 120, 239, 264, 389
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	374
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	1 cut(s)	374
XapI	RAATTY	3 cut(s)	100, 239, 264
XmnI	GAANNNNTTC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.