Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Forward (+)

31845264 .. 31849027

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCTCCACTTTCCTCACACTCTCAAACCCTTTGGTGTGCAGACCCAACACTTCGTCTCTGTCCAGCCAGAAACTACTCCCAGGTCTGCGAAGAAACTCATTGAGAGTCAACGCAATTGCCAAGAAATGGGAACCCACCAAGGTGGTTCCTCAAGCTGATAGAGTGCTTATTCGTCTTGAGCAACTCCCAGAGAAATCAGCTGGAGGAGTTTTGCTGCCCAAATCTGCCGTTAAATTTGAGCGGTATCTTACGGGAGAAGTTCTTTCTATTGGTTCTGAGGTTGGAGAAGTACAGGCTGGAAAGAAGGTTCTTTTCTCGGACATGAATGCTTATGAGGTGGATTTGGGAACAGAGGGTAGACACTGCTTCTGCAAAGAGAGCGAATTGTTAGCCGTGGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

135

Amino Acids

14.79

Weight (kDa)

8.84

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	48 - 134	9.7e-16	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	361
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	82
AleI	CACNNNNGTG	1 cut(s)	143
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	2 cut(s)	158, 203
AluI	AGCT	2 cut(s)	158, 203
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	204
BceAI	ACGGC	2 cut(s)	215, 380
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	2 cut(s)	135, 150
BmrFI	CCNGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	138, 200
BsaJI	CCNNGG	3 cut(s)	82, 141, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	82, 141, 396
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	135, 150
BsrBI	CCGCTC	1 cut(s)	244
BssECI	CCNNGG	3 cut(s)	82, 141, 396
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	396
BstMAI	GTCTC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	396
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	6 cut(s)	5, 69, 158, 203, 299, 395
CviKI_1	RGCY	6 cut(s)	5, 69, 158, 203, 299, 395
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	1 cut(s)	328
FaiI	YATR	2 cut(s)	326, 336
FatI	CATG	1 cut(s)	324
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	218
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	112, 362
Hpy188I	TCNGA	2 cut(s)	280, 322
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	112, 362
HpyAV	CCTTC	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	42, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	69, 79, 83, 96, 189, 204, 281, 285
Lsp1109I	GCAGC	1 cut(s)	204
MbiI	CCGCTC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	105
MfeI	CAATTG	1 cut(s)	117
MluCI	AATT	3 cut(s)	117, 236, 386
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	7 cut(s)	16, 26, 162, 200, 274, 331, 349
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	381
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	135, 150
OliI	CACNNNNGTG	1 cut(s)	143
PctI	GAATGC	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	135, 150
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	7 cut(s)	88, 147, 160, 205, 285, 312, 342
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	153, 179
SmoI	CTYRAG	2 cut(s)	153, 179
Sse9I	AATT	3 cut(s)	117, 236, 386
SsiI	CCGC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	141
TasI	AATT	3 cut(s)	117, 236, 386
TatI	WGTACW	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	371
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	341
TspRI	CASTG	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.