Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Forward (+)

26075101 .. 26078107

Gene Structure 3007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1223400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTTCCACTTTCGTCACACTACCAACCCCTTTTCTGTACACACCCAACACTGCTTCTCTGTCCAACAGCCAGAAGCTACTCCCAGGTCTGCGAAGGAAGTGTTTGAGAGTCAACGCAATTGCCACGAAATGGGAACCCACCAAGGTGGTTCCACAAGCTGATAGAGTGCTTATTCGTCTCGAGGTGCTCCCTCAGAAATCAGCTGGAGGAGTTTTGCTGCCCAAGTCAGCTGTTAAATTTGAACGCTATCTTATGGGAGAAATTCTTTCTGTTGGTGCTGACGTTGGGGAAGTGAAGGCTGGAAAGAAGGTTCTTTTTTCAGACATAAATGCATATGAGGTGGATTTGGGAGTAGATGGGAGGCATTGCTTCTGCAAAGAGAGTGAATTATTGGCCGTAGTCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

137

Amino Acids

14.86

Weight (kDa)

9.05

Isoelectric Point (pI)

29.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	49 - 135	1.5e-14	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	2 cut(s)	239, 264
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	85
AleI	CACNNNNGTG	1 cut(s)	146
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	79, 161, 206, 233
AluI	AGCT	4 cut(s)	79, 161, 206, 233
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	239, 264
AvaI	CYCGRG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	138, 153
BmrFI	CCNGG	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	85, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	85, 144
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	207
BshFI	GGCC	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	185
BsmBI	CGTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	39
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	138, 153
BsrDI	GCAATG	1 cut(s)	367
BsrGI	TGTACA	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	85, 144
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	87
BstAUI	TGTACA	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	207
BstXI	CCANNNNNNTGG	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	398
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	40
CviJI	RGCY	8 cut(s)	5, 72, 79, 161, 206, 233, 302, 398
CviKI_1	RGCY	8 cut(s)	5, 72, 79, 161, 206, 233, 302, 398
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	185
FaiI	YATR	4 cut(s)	257, 329, 337, 339
FauNDI	CATATG	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	111
Hpy166II	GTNNAC	2 cut(s)	42, 115
Hpy188I	TCNGA	2 cut(s)	198, 325
Hpy188III	TCNNGA	1 cut(s)	182
Hpy8I	GTNNAC	2 cut(s)	42, 115
HpyAV	CCTTC	3 cut(s)	90, 292, 304
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	335, 378
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	5 cut(s)	72, 86, 99, 192, 288
Lsp1109I	GCAGC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	4 cut(s)	120, 239, 264, 389
MlyI	GAGTC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	5 cut(s)	178, 203, 204, 334, 357
Mph1103I	ATGCAT	1 cut(s)	337
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	2 cut(s)	206, 233
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	87
NdeI	CATATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	138, 153
NmuCI	GTSAC	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	337
OliI	CACNNNNGTG	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	138, 153
PvuII	CAGCTG	2 cut(s)	206, 233
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	4 cut(s)	120, 239, 264, 389
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	144
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	183, 405
TasI	AATT	4 cut(s)	120, 239, 264, 389
TatI	WGTACW	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	132
XapI	RAATTY	2 cut(s)	239, 264
XhoI	CTCGAG	1 cut(s)	182
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.