Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Reverse (-)

8632405 .. 8635713

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g08830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGTCCACTTTCCTCACACTCTCAAACCCTTTGGTTTGCAGACCCAACACTTCTTCTCTGTCCAACCAGAGCCTACTCCCAGCTCTAAGAAGAAACTCACTGAGGGTCAACGCAATTGCCAAGAAATGGGAACCCACCAAGGTGGTTCCTCAAGCTGATAGAGTGCTTATTCGTCTTGAGCAACTCCCCGAGAAATCAACTGGAGGAGTTTTGCTGCCCAAATCTGCTGTGAAGTTCGAGCGGTATCTTATGGGAGAAGTTCTTTCTGTTGGTGCTGATGTTGGAGAAGTGCAGGCTGGAAAGAAGGTTCTTTTCTCAGACATCAATGCTTATGAGGTGGATTTGGGAACTGAGGGTAGACACTGCTTCTGCAAAGAGAGTGAATTGTTAGCTGTGGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

136

Amino Acids

14.78

Weight (kDa)

8.49

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	48 - 134	3.8e-15	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	361
AciI	CCGC	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	404
AleI	CACNNNNGTG	1 cut(s)	143
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	3 cut(s)	86, 158, 395
AluI	AGCT	3 cut(s)	86, 158, 395
Ama87I	CYCGRG	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	204
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	135, 150
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	138, 200
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	3 cut(s)	95, 333, 345
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	191
BspACI	CCGC	1 cut(s)	244
BspCNI	CTCAG	3 cut(s)	96, 332, 346
BspLI	GGNNCC	2 cut(s)	135, 150
BsrBI	CCGCTC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	4 cut(s)	89, 104, 319, 354
BstV1I	GCAGC	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	101, 364
Cac8I	GCNNGC	1 cut(s)	297
CviJI	RGCY	5 cut(s)	75, 86, 158, 299, 395
CviKI_1	RGCY	5 cut(s)	75, 86, 158, 299, 395
DdeI	CTNAG	4 cut(s)	89, 104, 319, 354
Eco130I	CCWWGG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaiI	YATR	2 cut(s)	254, 336
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	218
GluI	GCNGC	1 cut(s)	218
GsaI	CCCAGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	225
Hin1I	GRCGYC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
Hpy166II	GTNNAC	3 cut(s)	9, 112, 362
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	3 cut(s)	9, 112, 362
HpyAV	CCTTC	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	42, 295, 375
HpyF3I	CTNAG	4 cut(s)	89, 104, 319, 354
Hsp92I	GRCGYC	1 cut(s)	5
LpnPI	CCDG	5 cut(s)	83, 96, 189, 281, 285
Lsp1109I	GCAGC	1 cut(s)	204
MbiI	CCGCTC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	48, 105
MfeI	CAATTG	1 cut(s)	117
MluCI	AATT	2 cut(s)	117, 386
MmeI	TCCRAC	2 cut(s)	90, 265
MnlI	CCTC	6 cut(s)	26, 99, 162, 200, 331, 349
MslI	CAYNNNNRTG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	117
NlaIV	GGNNCC	2 cut(s)	135, 150
OliI	CACNNNNGTG	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	135, 150
RseI	CAYNNNNRTG	1 cut(s)	143
SatI	GCNGC	1 cut(s)	218
SetI	ASST	6 cut(s)	88, 147, 160, 312, 342, 397
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	153, 179
SmoI	CTYRAG	2 cut(s)	153, 179
Sse9I	AATT	2 cut(s)	117, 386
SsiI	CCGC	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	141
TaqI	TCGA	1 cut(s)	240
TasI	AATT	2 cut(s)	117, 386
TscAI	CASTG	2 cut(s)	108, 371
TseI	GCWGC	1 cut(s)	217
TspRI	CASTG	2 cut(s)	108, 371
Van91I	CCANNNNNTGG	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.