Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Reverse (-)

33225667 .. 33228832

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1150500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGGAACCCACCAAGCTGGAGGAGTTTTGCTGCCCAGGTCAGCTGTTAAATTTGAACGCTATCTTATGGGAGAAATTCTTTCTGTTGGTGCTGACGTTGGGGAAGTGAAGGCTGGAAAGAAGATGGGAGGCATTGCTTCTGCAAAGAGAGTGAATTATAGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

56

Amino Acids

5.8

Weight (kDa)

10.11

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	50, 75
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	17, 44
AluI	AGCT	2 cut(s)	17, 44
AoxI	GGCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	2 cut(s)	50, 75
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	37
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	163
BspANI	GGCC	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	163
CviJI	RGCY	4 cut(s)	17, 44, 113, 163
CviKI_1	RGCY	4 cut(s)	17, 44, 113, 163
EcoRII	CCWGG	1 cut(s)	35
FaiI	YATR	3 cut(s)	68, 159, 166
Fnu4HI	GCNGC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	96
LpnPI	CCDG	4 cut(s)	3, 22, 49, 99
Lsp1109I	GCAGC	1 cut(s)	18
MaeII	ACGT	1 cut(s)	96
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	3 cut(s)	50, 75, 154
MnlI	CCTC	2 cut(s)	14, 122
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	37
SetI	ASST	4 cut(s)	19, 41, 46, 99
SgeI	CNNG	5 cut(s)	26, 30, 48, 49, 126
Sse9I	AATT	3 cut(s)	50, 75, 154
StyD4I	CCNGG	1 cut(s)	35
TaiI	ACGT	1 cut(s)	99
TasI	AATT	3 cut(s)	50, 75, 154
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TseI	GCWGC	1 cut(s)	31
XapI	RAATTY	2 cut(s)	50, 75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.