Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Reverse (-)

23462602 .. 23463258

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0172500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAAACTTTCACATCTGCAAGAGATATACACTCGGTTGCATGGTCGGTTTCACTGCAAATGTCACCAATATCCCCATATATGCCCACCTGAGAATTGAAGAGATTGTTAAGTCAAGAATTGTGTATGATGTCAGTTATCACCTCACGCAAGCTAGGATCTACGATTATGAAAACGAAGTCGAAATTGCCATTGGAGAGGCCGTGAATTTGACCCAAGAAACCACTGGGATGACATTTAAGCTATCATACAAAAGGACCAAGAGCACGTGTTGGAATGATGCCAAAACCATGTCTATCAAGTCTGGCGGCGTTAAAACAACCATGCAAGCTGGTGTTCCGGTAATTGGAGACGACGAAAAGCTTGTAATTAGTTCAAATGAGTTTACGAGTGGATCAACAATATTTAAGTGGGGAGAAGTTGAGACATGGGAAACTCCAGTGCAGAGCGTGTGCAGAGTTGACGTGCCGGCAATGACTAAGTTGAATGTGAGTCTTGTGGCGAATAAAGCTTCATATGAAGTTCCATTTAACTATTCTCGCCGCGACACTCGTACCAACGGTCAAATAAGCAACGACAACGACATGGATGATGGCATTTACATTGGGTTCAATTTCTATAACTTCAAGTACAACATCAAGCAAAAAAATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

218

Amino Acids

24.73

Weight (kDa)

6.83

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	546
AciI	CCGC	2 cut(s)	309, 544
AclWI	GGATC	2 cut(s)	167, 403
AcsI	RAATTY	1 cut(s)	208
AcvI	CACGTG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	556, 632
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	5 cut(s)	101, 378, 487, 613, 628
AjiI	CACGTC	1 cut(s)	466
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	5 cut(s)	155, 244, 332, 364, 512
AluI	AGCT	5 cut(s)	155, 244, 332, 364, 512
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	2 cut(s)	345, 419
AlwI	GGATC	2 cut(s)	167, 403
AoxI	GGCC	1 cut(s)	201
ApoI	RAATTY	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	58, 134
AvaII	GGWCC	1 cut(s)	258
BaeI	ACNNNNGTAYC	2 cut(s)	538, 571
BbrPI	CACGTG	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	269
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	345, 419
BfaI	CTAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	310, 544
BlsI	GCNGC	2 cut(s)	311, 545
Bme18I	GGWCC	1 cut(s)	258
BmgBI	CACGTC	1 cut(s)	466
BmgT120I	GGNCC	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	271
BmuI	ACTGGG	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	423
BsaAI	YACGTR	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	232, 440
Bse3DI	GCAATG	1 cut(s)	480
BseGI	GGATG	2 cut(s)	237, 595
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	232, 440
BsgI	GTGCAG	2 cut(s)	464, 475
Bsh1236I	CGCG	1 cut(s)	546
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	341, 470
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	2 cut(s)	345, 419
BsmBI	CGTCTC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	2 cut(s)	159, 395
BspACI	CCGC	2 cut(s)	309, 544
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	546
BspPI	GGATC	2 cut(s)	167, 403
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	469
BsrI	ACTGG	2 cut(s)	232, 440
BssAI	RCCGGY	1 cut(s)	469
BssMI	GATC	2 cut(s)	159, 395
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	1 cut(s)	96
BstBAI	YACGTR	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	153, 330, 471
BstDEI	CTNAG	2 cut(s)	92, 480
BstF5I	GGATG	2 cut(s)	237, 595
BstFNI	CGCG	1 cut(s)	546
BstKTI	GATC	2 cut(s)	162, 398
BstMAI	GTCTC	2 cut(s)	345, 419
BstMBI	GATC	2 cut(s)	159, 395
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstUI	CGCG	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	203
BtrI	CACGTC	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	237, 595
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 225, 447
Cac8I	GCNNGC	3 cut(s)	153, 330, 471
Cfr10I	RCCGGY	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	555, 631
CviAII	CATG	5 cut(s)	43, 292, 325, 429, 586
CviJI	RGCY	6 cut(s)	155, 203, 244, 332, 364, 512
CviKI_1	RGCY	6 cut(s)	155, 203, 244, 332, 364, 512
CviQI	GTAC	2 cut(s)	555, 631
DdeI	CTNAG	2 cut(s)	92, 480
DpnI	GATC	2 cut(s)	161, 397
DpnII	GATC	2 cut(s)	159, 395
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	258
Eco72I	CACGTG	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	5 cut(s)	46, 295, 328, 432, 589
FatI	CATG	5 cut(s)	42, 291, 324, 428, 585
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	310, 544
FokI	GGATG	2 cut(s)	244, 602
Fsp4HI	GCNGC	2 cut(s)	310, 544
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	2 cut(s)	310, 544
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	341, 470
Hin1II	CATG	5 cut(s)	46, 295, 328, 432, 589
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	2 cut(s)	362, 510
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	2 cut(s)	341, 470
HphI	GGTGA	2 cut(s)	58, 134
Hpy166II	GTNNAC	2 cut(s)	387, 463
Hpy188III	TCNNGA	1 cut(s)	117
Hpy8I	GTNNAC	2 cut(s)	387, 463
Hpy99I	CGWCG	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4IV	ACGT	2 cut(s)	269, 465
HpyCH4V	TGCA	6 cut(s)	21, 42, 59, 328, 445, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	2 cut(s)	92, 480
HpySE526I	ACGT	2 cut(s)	269, 465
Hsp92II	CATG	5 cut(s)	46, 295, 328, 432, 589
KroI	GCCGGC	1 cut(s)	469
KroNI	GCCGGC	1 cut(s)	471
Kzo9I	GATC	2 cut(s)	159, 395
LpnPI	CCDG	7 cut(s)	104, 213, 291, 318, 354, 453, 483
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	269, 465
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	161, 397
MboI	GATC	2 cut(s)	159, 395
MboII	GAAGA	1 cut(s)	113
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	7 cut(s)	96, 120, 186, 208, 345, 369, 613
MlyI	GAGTC	1 cut(s)	502
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	2 cut(s)	155, 193
MroNI	GCCGGC	1 cut(s)	469
MseI	TTAA	5 cut(s)	111, 240, 315, 408, 531
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	2 cut(s)	341, 470
MvnI	CGCG	1 cut(s)	546
MwoI	GCNNNNNNNGC	1 cut(s)	509
NaeI	GCCGGC	1 cut(s)	471
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	2 cut(s)	159, 395
NgoMIV	GCCGGC	1 cut(s)	469
NlaIII	CATG	5 cut(s)	46, 295, 328, 432, 589
NmuCI	GTSAC	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	311, 545
PleI	GAGTC	1 cut(s)	501
PmaCI	CACGTG	1 cut(s)	270
PmlI	CACGTG	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	270
PspCI	CACGTG	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	2 cut(s)	556, 632
RsaNI	GTAC	2 cut(s)	555, 631
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	5 cut(s)	111, 240, 315, 408, 531
SatI	GCNGC	2 cut(s)	310, 544
Sau3AI	GATC	2 cut(s)	159, 395
Sau96I	GGNCC	1 cut(s)	258
SchI	GAGTC	1 cut(s)	502
SduI	GDGCHC	1 cut(s)	269
SetI	ASST	9 cut(s)	93, 147, 157, 246, 272, 334, 366, 468, 514
SfaNI	GCATC	1 cut(s)	271
SinI	GGWCC	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	7 cut(s)	96, 120, 186, 208, 345, 369, 613
SsiI	CCGC	2 cut(s)	309, 544
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	563
TaiI	ACGT	2 cut(s)	272, 468
TaqI	TCGA	1 cut(s)	183
TasI	AATT	7 cut(s)	96, 120, 186, 208, 345, 369, 613
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	2 cut(s)	312, 546
Tru1I	TTAA	5 cut(s)	111, 240, 315, 408, 531
Tru9I	TTAA	5 cut(s)	111, 240, 315, 408, 531
TscAI	CASTG	3 cut(s)	61, 232, 447
TseFI	GTSAC	1 cut(s)	64
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	186, 504, 534
TspRI	CASTG	3 cut(s)	61, 232, 447
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.