Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Reverse (-)

35912178 .. 35916208

Gene Structure 4031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG188400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCCTCCACTTTCCTCACACTCTCAAACCCTTTGGTGTGCAGACCCAACACTTCTTCTCTGTCCAGCCAGAAACTACTCCCAGGTCTGCGAAGAAACTCATTGAGAGTCAACGCAATTGCCAAGAAATGGGAACCCACCAAGGTGGTTCCTCAAGCTGATAGAGTGCTTATTCGTCTTGAGCAGCTCCCGGAGAAATCAGCTGGAGGAGTTTTGCTGCCCAAATCTGCCGTTAAATTTGAGCGGTATCTTATGGGAGAAGTTCTTTCTATTGGTTCCGAGGTTGGAGAAGTGCAGGCTGGAAAGAAGGTGAGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

106

Amino Acids

11.53

Weight (kDa)

10.17

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	48 - 103	2.7e-08	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	129
AccBSI	CCGCTC	1 cut(s)	244
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	129
AjnI	CCWGG	1 cut(s)	82
AleI	CACNNNNGTG	1 cut(s)	143
AluBI	AGCT	3 cut(s)	158, 187, 203
AluI	AGCT	3 cut(s)	158, 187, 203
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	184, 217
ApoI	RAATTY	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	196, 204
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	191
BisI	GCNGC	2 cut(s)	185, 218
BlsI	GCNGC	2 cut(s)	186, 219
Bme1390I	CCNGG	2 cut(s)	84, 191
BmiI	GGNNCC	3 cut(s)	135, 150, 277
BmrFI	CCNGG	2 cut(s)	84, 191
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	138, 200
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	82, 141, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	82, 141, 279
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	196, 204
BsgI	GTGCAG	2 cut(s)	61, 314
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	129
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	3 cut(s)	135, 150, 277
BsrBI	CCGCTC	1 cut(s)	244
BssECI	CCNNGG	3 cut(s)	82, 141, 279
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	297
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	82, 189
BstV1I	GCAGC	2 cut(s)	196, 204
BstXI	CCANNNNNNTGG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	297
CviJI	RGCY	6 cut(s)	5, 69, 158, 187, 203, 299
CviKI_1	RGCY	6 cut(s)	5, 69, 158, 187, 203, 299
Eco130I	CCWWGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaiI	YATR	1 cut(s)	254
Fnu4HI	GCNGC	2 cut(s)	185, 218
Fsp4HI	GCNGC	2 cut(s)	185, 218
GluI	GCNGC	2 cut(s)	185, 218
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	42, 295
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	8 cut(s)	69, 79, 83, 96, 189, 204, 281, 285
Lsp1109I	GCAGC	2 cut(s)	196, 204
MaeIII	GTNAC	1 cut(s)	314
MbiI	CCGCTC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	48, 105
MfeI	CAATTG	1 cut(s)	117
MluCI	AATT	2 cut(s)	117, 236
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	5 cut(s)	16, 26, 162, 200, 274
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	84, 191
MunI	CAATTG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	84
NciI	CCSGG	1 cut(s)	191
NlaIV	GGNNCC	3 cut(s)	135, 150, 277
OliI	CACNNNNGTG	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	129
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	186, 219
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	3 cut(s)	135, 150, 277
PvuII	CAGCTG	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	185, 218
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	84, 191
SetI	ASST	7 cut(s)	88, 147, 160, 189, 205, 285, 312
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	2 cut(s)	153, 179
SmoI	CTYRAG	2 cut(s)	153, 179
Sse9I	AATT	2 cut(s)	117, 236
SsiI	CCGC	1 cut(s)	244
StyD4I	CCNGG	2 cut(s)	82, 189
StyI	CCWWGG	1 cut(s)	141
TasI	AATT	2 cut(s)	117, 236
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseI	GCWGC	2 cut(s)	184, 217
Van91I	CCANNNNNTGG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.