Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Reverse (-)

22251047 .. 22252899

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTTCGAGTTTCATTACAGTACCTAAACCCTTCTTGTCCTTCCCCATCAAAACCAATGCTCCTACTCTACCTCAGCAGACCCTTCTCGGAATTCGAAGAAATTCCTTTAGAATTAACGCCGTTTCCACCAAATGGGAACCGGCAAAGGTTGTACCACAAGCAGACAGGGTCCTTGTCCGCCTTGAAGTGCTTCCTGAGAAATCCTCAGGAGGAGTACTGTTGCCTAAATCAGCTGTGAAATTCGAGAGGTACCTAACAGGCGAGGTTGTCTCTGTTGGGTCTGAGGTTGGGGAAGTGGAACCTGGCAAGAAGGTTTTGTTCTCTGATATGAGCGCCTATGAGGTTGATTTTGGAACAGAAGATGCTAAGCATTGCTTTTGCAAAGAAAGCGACTTGTTAGCTATCGTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

138

Amino Acids

15.14

Weight (kDa)

7.74

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn10	PF00166	50 - 137	9.3e-18	Chaperonin 10 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	135
AciI	CCGC	1 cut(s)	181
AcsI	RAATTY	3 cut(s)	93, 103, 242
AfaI	GTAC	4 cut(s)	24, 156, 219, 254
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	236, 404
AluI	AGCT	2 cut(s)	236, 404
Alw26I	GTCTC	1 cut(s)	277
ApoI	RAATTY	3 cut(s)	93, 103, 242
Asp700I	GAANNNNTTC	2 cut(s)	103, 192
Asp718I	GGTACC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	172
AsuII	TTCGAA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	172
AxyI	CCTNAGG	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	75
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	339
BlpI	GCTNAGC	1 cut(s)	369
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	4 cut(s)	141, 173, 254, 303
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	355
BplI	GAGNNNNNCTC	4 cut(s)	191, 223, 257, 289
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	412
Bse21I	CCTNAGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	373
BseBI	CCWGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	373
BseMII	CTCAG	4 cut(s)	89, 189, 222, 276
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	277
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1720I	GCTNAGC	1 cut(s)	369
BspACI	CCGC	1 cut(s)	181
BspCNI	CTCAG	4 cut(s)	88, 190, 221, 277
BspLI	GGNNCC	4 cut(s)	141, 173, 254, 303
BspT104I	TTCGAA	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	22, 222
BstBI	TTCGAA	1 cut(s)	97
BstDEI	CTNAG	5 cut(s)	75, 198, 208, 285, 369
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	338
BstMAI	GTCTC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	208
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	4 cut(s)	23, 155, 218, 253
CviJI	RGCY	3 cut(s)	5, 236, 404
CviKI_1	RGCY	3 cut(s)	5, 236, 404
CviQI	GTAC	4 cut(s)	23, 155, 218, 253
DdeI	CTNAG	5 cut(s)	75, 198, 208, 285, 369
EciI	GGCGGA	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	172
Eco81I	CCTNAGG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	304
FaiI	YATR	2 cut(s)	332, 342
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
GlaI	GCGC	1 cut(s)	337
HaeII	RGCGCY	1 cut(s)	339
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	1 cut(s)	338
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	143
Hpy188I	TCNGA	3 cut(s)	92, 286, 328
Hpy188III	TCNNGA	3 cut(s)	197, 210, 247
HpyAV	CCTTC	4 cut(s)	43, 52, 95, 307
HpyCH4III	ACNGT	2 cut(s)	22, 222
HpyCH4V	TGCA	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	5 cut(s)	75, 198, 208, 285, 369
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	7 cut(s)	154, 156, 195, 210, 246, 291, 318
LweI	GCATC	1 cut(s)	355
MboII	GAAGA	2 cut(s)	111, 374
MluCI	AATT	4 cut(s)	93, 103, 114, 242
MnlI	CCTC	7 cut(s)	84, 206, 217, 243, 259, 280, 337
MroXI	GAANNNNTTC	2 cut(s)	103, 192
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	390
NlaIV	GGNNCC	4 cut(s)	141, 173, 254, 303
NspV	TTCGAA	1 cut(s)	97
PdmI	GAANNNNTTC	2 cut(s)	103, 192
PflFI	GACNNNGTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	4 cut(s)	141, 173, 254, 303
PspPI	GGNCC	1 cut(s)	172
PspPPI	RGGWCCY	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	4 cut(s)	24, 156, 219, 254
RsaNI	GTAC	4 cut(s)	23, 155, 218, 253
SaqAI	TTAA	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	306
SfaNI	GCATC	1 cut(s)	355
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	1 cut(s)	172
Sse9I	AATT	4 cut(s)	93, 103, 114, 242
SsiI	CCGC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	22, 222
TaqI	TCGA	3 cut(s)	8, 97, 246
TasI	AATT	4 cut(s)	93, 103, 114, 242
TatI	WGTACW	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TspDTI	ATGAA	1 cut(s)	4
Tth111I	GACNNNGTC	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	3 cut(s)	93, 103, 242
XmnI	GAANNNNTTC	2 cut(s)	103, 192
ZrmI	AGTACT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.