Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010376

Physical Location & Seq

Genomic Coordinates Reverse (-)

23449963 .. 23450235

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0172400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAGTGGGGGTTTGATATGGGCAACGGCAGAGGACTTGGTGAGAAACAGAGGACGCGTTCTTTCTCTGTATCGCCAGATATTGAGAAGCATCAATTCTCCGAATCTACCTCTGAATTTGGCAGCAAGACTCGCCAAGAAAGCAGAGGTGCGCGCAATCTTCATGTTGGCTTCCGAGGAGAGGTCCCTGCACAACATTGAAGACCTCGTTGATGCTGCCAACTACTCTCTCTCCCTCTTGAGGAAAGGAGAGATACGCAAGTATATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006458 GO:0006950 GO:0006986 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010033 GO:0019904 GO:0031967 GO:0031974 GO:0031975 GO:0035966 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050896 GO:0051082 GO:0051084 GO:0051085 GO:0051087 GO:0061077 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn10

Protein Analysis

90

Amino Acids

10.19

Weight (kDa)

10.09

Isoelectric Point (pI)

59.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LYRM_2	PF23655	12 - 81	1e-40	LYR motif containing domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44650 AT3G60210
fragaria_vesca	FvH4_7g08830
malus_domestica	MD00G1150500.v1.1 MD02G1223400.v1.1 MD07G1091300.v1.1 MD13G1240800.v1.1
prunus_persica	Prupe.2G116500_v2.0.a1
pyrus_communis	pycom02g19040 pycom07g07460
rosa_chinensis	RchiOBHm_Chr1g0344251
rosa_multiflora	Rmu_sc0000019.1_g000007 Rmu_sc0014172.1_g000001
rosa_roxburghii	Rroxscaffold_4G00309980
rosa_rugosa	Rorug01G0172400 Rorug01G0172500
rosa_samantha	Rh1AG188400 Rh1BG154800 Rh1CG174200 Rh1DG186900
rosa_wichuraiana	Rw1G015520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	57, 153
AcsI	RAATTY	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	180, 240
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	200, 269
ApeKI	GCWGC	2 cut(s)	122, 215
ApoI	RAATTY	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	153, 155
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	183
BaeI	ACNNNNGTAYC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	134, 202
BceAI	ACGGC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	123, 216
BlsI	GCNGC	2 cut(s)	124, 217
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	185
BmsI	GCATC	2 cut(s)	99, 202
BpiI	GAAGAC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	174
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 240
BseDI	CCNNGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	180, 240
BsePI	GCGCGC	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	134, 202
BsgI	GTGCAG	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	57, 153
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	180, 240
BsmFI	GGGAC	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	57, 153
BspLI	GGNNCC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	174
BssHII	GCGCGC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	153
BstFNI	CGCG	2 cut(s)	57, 153
BstHHI	GCGC	2 cut(s)	153, 155
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 140
BstUI	CGCG	2 cut(s)	57, 153
BstV1I	GCAGC	2 cut(s)	134, 202
BstV2I	GAAGAC	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	153
CfoI	GCGC	2 cut(s)	153, 155
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	1 cut(s)	63
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	1 cut(s)	170
CviKI_1	RGCY	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	183
FaeI	CATG	1 cut(s)	166
FaiI	YATR	3 cut(s)	19, 164, 264
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	123, 216
Fsp4HI	GCNGC	2 cut(s)	123, 216
GlaI	GCGC	2 cut(s)	152, 154
GluI	GCNGC	2 cut(s)	123, 216
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	2 cut(s)	153, 155
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	2 cut(s)	151, 153
HinP1I	GCGC	2 cut(s)	151, 153
HinfI	GANTC	2 cut(s)	103, 129
HphI	GGTGA	1 cut(s)	52
Hpy188I	TCNGA	3 cut(s)	102, 114, 175
Hpy188III	TCNNGA	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 140
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	2 cut(s)	151, 153
LpnPI	CCDG	2 cut(s)	89, 200
Lsp1109I	GCAGC	2 cut(s)	134, 202
LweI	GCATC	2 cut(s)	99, 202
MboII	GAAGA	2 cut(s)	151, 212
MluCI	AATT	2 cut(s)	94, 115
MluI	ACGCGT	1 cut(s)	55
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	9 cut(s)	25, 44, 120, 139, 169, 174, 215, 234, 245
MvnI	CGCG	2 cut(s)	57, 153
MwoI	GCNNNNNNNGC	2 cut(s)	131, 140
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	185
PauI	GCGCGC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	124, 217
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PpuMI	RGGWCCY	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	183
PspPPI	RGGWCCY	1 cut(s)	183
PteI	GCGCGC	1 cut(s)	151
SatI	GCNGC	2 cut(s)	123, 216
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	1 cut(s)	123
SetI	ASST	4 cut(s)	112, 150, 185, 207
SfaNI	GCATC	2 cut(s)	99, 202
SinI	GGWCC	1 cut(s)	183
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	94, 115
TasI	AATT	2 cut(s)	94, 115
TfiI	GAWTC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	122, 215
TspDTI	ATGAA	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.