AT2G44745
WRKY Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014211
Physical Location & Seq
Reverse (-)
18447203 .. 18449093
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44745.1

Sequence Viewer

Length: 657 bp
ATGGAAGGAGGAGGGAGAAGAGTATTCAGTAATTACGATCTACAACAAGTGACATCGTCGTCGACGACGATTCAAGAGAATATGAACTTCCTCGTTCCTTTTGAAGAAACCAATGTCTTAACCTTTTTCTCTTCTTCTTCTTCCTCTTCTCTTTCTTCTCCTTCTTTCCCCATTCACAACTCTTCCTCCACTACTACTACTCATGCACCTCTAGGGTTTTCTAATAATCTTCAGGGTGGAGGACCCTTGGGATCAAAGGTGGTTAATGATGATCAGGAGAATTTTGGAGGTGGAACTAACAATGATGCTCATTCTAATTCTTGGTGGAGATCAAATAGTGGAAGTGGAGATATGAAGAACAAAGTGAAGATAAGGAGGAAACTAAGAGAGCCAAGATTCTGTTTCCAAACCAAAAGCGATGTTGATGTTCTTGACGATGGCTACAAATGGCGTAAATATGGTCAGAAAGTCGTCAAGAACAGCCTTCACCCCAGGAGTTATTACAGATGCACACACAACAACTGTAGGGTGAAAAAGAGAGTGGAGCGACTATCGGAAGATTGTAGAATGGTGATTACTACTTACGAAGGTCGTCACAACCACATTCCCTCTGATGACTCCACTTCTCCTGACCATGATTGTCTCTCTTCCTTTTAA

Protein Analysis

218

Amino Acids

24.55

Weight (kDa)

8.8

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 145 - 201 1.6e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44745
fragaria_vesca FvH4_7g10440 FvH4_7g10440 FvH4_7g10440
malus_domestica MD07G1110400.v1.1
prunus_persica Prupe.2G133800_v2.0.a1 Prupe.2G133800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348121
rosa_laevigata RLG00000028687
rosa_roxburghii Rroxscaffold_4G00307200
rosa_rugosa Rorug01G0192600
rosa_samantha Rh1AG210300 Rh1BG176000 Rh1CG194900 Rh1DG205800
rosa_wichuraiana Rw0G011400 Rw1G017560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 62
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 215
AgsI TTSAA 2 cut(s) 74, 104
AjnI CCWGG 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 1 cut(s) 259
ApoI RAATTY 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 479, 541, 583
AvaII GGWCC 1 cut(s) 242
BccI CCATC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 493
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 493
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 493
BmsI GCATC 2 cut(s) 295, 497
BsaJI CCNNGG 2 cut(s) 246, 491
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
BseBI CCWGG 1 cut(s) 493
BseDI CCNNGG 2 cut(s) 246, 491
BseRI GAGGAG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 647
Bsp143I GATC 4 cut(s) 37, 251, 271, 329
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 246, 491
BssMI GATC 4 cut(s) 37, 251, 271, 329
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 5 cut(s) 13, 136, 151, 187, 652
BstDEI CTNAG 1 cut(s) 383
BstKTI GATC 4 cut(s) 40, 254, 274, 332
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 4 cut(s) 37, 251, 271, 329
BstNI CCWGG 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 432
Cfr13I GGNCC 1 cut(s) 242
CviAII CATG 2 cut(s) 203, 635
CviJI RGCY 3 cut(s) 391, 441, 483
CviKI_1 RGCY 3 cut(s) 391, 441, 483
DdeI CTNAG 1 cut(s) 383
DpnI GATC 4 cut(s) 39, 253, 273, 331
DpnII GATC 4 cut(s) 37, 251, 271, 329
DrdI GACNNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 1 cut(s) 58
Eam1104I CTCTTC 5 cut(s) 13, 136, 151, 187, 652
EarI CTCTTC 5 cut(s) 13, 136, 151, 187, 652
Eco130I CCWWGG 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 491
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 206, 638
FaiI YATR 5 cut(s) 83, 204, 353, 459, 636
FatI CATG 2 cut(s) 202, 634
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 62
FspBI CTAG 1 cut(s) 212
Hin1II CATG 2 cut(s) 206, 638
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 3 cut(s) 70, 396, 617
HphI GGTGA 3 cut(s) 479, 541, 583
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 3 cut(s) 465, 556, 613
Hpy188III TCNNGA 5 cut(s) 74, 275, 431, 475, 629
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 4 cut(s) 61, 64, 67, 70
HpyAV CCTTC 3 cut(s) 171, 494, 581
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4V TGCA 2 cut(s) 206, 510
HpyF3I CTNAG 1 cut(s) 383
Hsp92II CATG 2 cut(s) 206, 638
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 4 cut(s) 37, 251, 271, 329
LmnI GCTCC 1 cut(s) 544
LpnPI CCDG 5 cut(s) 218, 260, 478, 505, 642
LweI GCATC 2 cut(s) 295, 497
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 49, 593
MalI GATC 4 cut(s) 39, 253, 273, 331
MboI GATC 4 cut(s) 37, 251, 271, 329
MluCI AATT 3 cut(s) 31, 280, 316
MlyI GAGTC 1 cut(s) 611
MnlI CCTC 9 cut(s) 5, 101, 154, 196, 219, 233, 281, 369, 619
MseI TTAA 3 cut(s) 119, 264, 655
MspR9I CCNGG 1 cut(s) 493
MvaI CCWGG 1 cut(s) 493
NdeII GATC 4 cut(s) 37, 251, 271, 329
NlaIII CATG 2 cut(s) 206, 638
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 49, 593
PcsI WCGNNNNNNNCGW 2 cut(s) 62, 65
PfeI GAWTC 2 cut(s) 70, 396
PflFI GACNNNGTC 1 cut(s) 55
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
PpuMI RGGWCCY 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 242
PspPPI RGGWCCY 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 55
SalI GTCGAC 1 cut(s) 61
SaqAI TTAA 3 cut(s) 119, 264, 655
Sau3AI GATC 4 cut(s) 37, 251, 271, 329
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 493
SetI ASST 5 cut(s) 125, 211, 261, 292, 592
SfaNI GCATC 2 cut(s) 295, 497
SfcI CTRYAG 1 cut(s) 523
SgrDI CGTCGACG 1 cut(s) 61
SinI GGWCC 1 cut(s) 242
Sse9I AATT 3 cut(s) 31, 280, 316
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 491
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 524
TaqI TCGA 1 cut(s) 62
TasI AATT 3 cut(s) 31, 280, 316
TfiI GAWTC 2 cut(s) 70, 396
Tru1I TTAA 3 cut(s) 119, 264, 655
Tru9I TTAA 3 cut(s) 119, 264, 655
TseFI GTSAC 2 cut(s) 49, 593
Tsp45I GTSAC 2 cut(s) 49, 593
TspDTI ATGAA 2 cut(s) 98, 368
Tth111I GACNNNGTC 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 62
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.