Prupe.2G133800_v2.0.a1
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014211
Physical Location & Seq
Forward (+)
19173547 .. 19176938
3392 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G133800.2

Sequence Viewer

Length: 735 bp
ATGGAAGGAGATCAAAGAGGGGTTCCGAGTTATGAAGTTCAGATTTCGTTTTCGAGCACCCCAAACCCTCAACAATCGATCCACGAAATGGGGTTTGTGCAGTTCGAAGATCATCATCCTCATCATAATCAGGTTTTGAGCTTCATGGCCCCATCATCACATATACAGCAGCAGCAGCCTAACAATTCTCATCACCCTCATCATCATCAGCCAGCTGAGCTCAGCAGCGGTGCCTCAGCCGCCGCCACCACCACCAGCAACGGCGTTACCGTGGGGTTTAGTACACATACTGACCTACTTGTTGCAAGACCTTCTTGGAATAATAGTAACGACCAGGTGGGAACGTTGGATCCAAAGGCTATTAGTGATGAAAATGGGACTGGTAATGCTAGTGATTGCAGCAACTCATGGTGGAGGAGCTCAAGCTCAGAGAAGAGCAAGATGAAGGTGAGGAGAAAGCTTAGGGAGCCAAGATTCTGTTTCCAAACCAGAAGTGATGTGGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAACAGCCTTCATCCTAGAAGCTACTACCGCTGTACTCACAGTAACTGTCGGGTGAAGAAAAGGGTCGAACGACTGTCTGAAGATTGTCGAATGGTGATAACAACCTATGAAGGTAGACACAACCACACCCCTTGCGATGACTCTAATTCCTCTGAACATGAATGCTTTAGCTCTTTCTAA

Protein Analysis

245

Amino Acids

27.7

Weight (kDa)

7.29

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44745
fragaria_vesca FvH4_7g10440 FvH4_7g10440 FvH4_7g10440
malus_domestica MD07G1110400.v1.1
prunus_persica Prupe.2G133800_v2.0.a1 Prupe.2G133800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348121
rosa_laevigata RLG00000028687
rosa_roxburghii Rroxscaffold_4G00307200
rosa_rugosa Rorug01G0192600
rosa_samantha Rh1AG210300 Rh1BG176000 Rh1CG194900 Rh1DG205800
rosa_wichuraiana Rw0G011400 Rw1G017560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 88
AccI GTMKAC 1 cut(s) 670
AciI CCGC 4 cut(s) 228, 240, 243, 583
AclI AACGTT 1 cut(s) 344
AclWI GGATC 3 cut(s) 73, 344, 357
AcoI YGGCCR 1 cut(s) 538
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 2 cut(s) 283, 589
AfiI CCNNNNNNNGG 1 cut(s) 88
AjnI CCWGG 1 cut(s) 333
AloI GAACNNNNNNTCC 2 cut(s) 334, 366
AluBI AGCT 8 cut(s) 141, 215, 220, 420, 426, 460, 576, 726
AluI AGCT 8 cut(s) 141, 215, 220, 420, 426, 460, 576, 726
Alw21I GWGCWC 3 cut(s) 59, 222, 422
AlwI GGATC 3 cut(s) 73, 344, 357
AlwNI CAGNNNCTG 1 cut(s) 600
AoxI GGCC 2 cut(s) 147, 538
ApeKI GCWGC 5 cut(s) 169, 172, 175, 225, 399
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 4 cut(s) 185, 460, 619, 661
AsuII TTCGAA 1 cut(s) 105
BalI TGGCCA 1 cut(s) 540
BamHI GGATCC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 2 cut(s) 222, 422
Bbv12I GWGCWC 3 cut(s) 59, 222, 422
BbvCI CCTCAGC 1 cut(s) 235
BbvI GCAGC 5 cut(s) 181, 184, 187, 237, 411
BccI CCATC 2 cut(s) 160, 509
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 335
BfaI CTAG 2 cut(s) 390, 570
BisI GCNGC 7 cut(s) 170, 173, 176, 226, 240, 243, 400
BlpI GCTNAGC 2 cut(s) 216, 221
BlsI GCNGC 7 cut(s) 171, 174, 177, 227, 241, 244, 401
Bme1390I CCNGG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 5 cut(s) 24, 150, 232, 351, 468
BmrFI CCNGG 1 cut(s) 335
Bpu10I CCTNAGC 2 cut(s) 235, 461
Bpu1102I GCTNAGC 2 cut(s) 216, 221
Bpu14I TTCGAA 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 406
Bsa29I ATCGAT 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 385
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 335
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 3 cut(s) 115, 508, 565
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 4 cut(s) 207, 235, 249, 441
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 2 cut(s) 430, 466
BseXI GCAGC 5 cut(s) 181, 184, 187, 237, 411
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 2 cut(s) 149, 540
BshNI GGYRCC 1 cut(s) 230
BshVI ATCGAT 1 cut(s) 77
BsiHKAI GWGCWC 3 cut(s) 59, 222, 422
BslFI GGGAC 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 391
BsmI GAATGC 1 cut(s) 722
BsnI GGCC 2 cut(s) 149, 540
Bsp119I TTCGAA 1 cut(s) 105
Bsp1286I GDGCHC 3 cut(s) 59, 222, 422
Bsp143I GATC 4 cut(s) 10, 78, 109, 349
Bsp1720I GCTNAGC 2 cut(s) 216, 221
BspACI CCGC 4 cut(s) 228, 240, 243, 583
BspANI GGCC 2 cut(s) 149, 540
BspCNI CTCAG 4 cut(s) 208, 234, 248, 440
BspDI ATCGAT 1 cut(s) 77
BspLI GGNNCC 5 cut(s) 24, 150, 232, 351, 468
BspPI GGATC 3 cut(s) 73, 344, 357
BspQI GCTCTTC 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 4 cut(s) 10, 78, 109, 349
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 4 cut(s) 271, 596, 602, 630
Bst6I CTCTTC 1 cut(s) 428
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 5 cut(s) 216, 221, 235, 427, 461
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 115, 508, 565
BstKTI GATC 4 cut(s) 13, 81, 112, 352
BstMBI GATC 4 cut(s) 10, 78, 109, 349
BstMWI GCNNNNNNNGC 5 cut(s) 175, 217, 239, 466, 582
BstNI CCWGG 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 5 cut(s) 181, 184, 187, 237, 411
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu15I ATCGAT 1 cut(s) 77
BsuRI GGCC 2 cut(s) 149, 540
BsuTUI ATCGAT 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 705
BtsCI GGATG 3 cut(s) 115, 508, 565
Cac8I GCNNGC 1 cut(s) 213
CaiI CAGNNNCTG 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 77
CsiI ACCWGGT 1 cut(s) 333
Csp6I GTAC 2 cut(s) 282, 588
CspCI CAANNNNNGTGG 2 cut(s) 668, 703
CviAII CATG 3 cut(s) 145, 408, 713
CviQI GTAC 2 cut(s) 282, 588
DdeI CTNAG 5 cut(s) 216, 221, 235, 427, 461
DpnI GATC 4 cut(s) 12, 80, 111, 351
DpnII GATC 4 cut(s) 10, 78, 109, 349
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Ecl136II GAGCTC 2 cut(s) 220, 420
Eco24I GRGCYC 2 cut(s) 222, 422
Eco53kI GAGCTC 2 cut(s) 220, 420
Eco57I CTGAAG 1 cut(s) 654
EcoICRI GAGCTC 2 cut(s) 220, 420
EcoRII CCWGG 1 cut(s) 333
EcoT38I GRGCYC 2 cut(s) 222, 422
FaeI CATG 3 cut(s) 148, 411, 716
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 1 cut(s) 391
FatI CATG 3 cut(s) 144, 407, 712
FblI GTMKAC 1 cut(s) 670
Fnu4HI GCNGC 7 cut(s) 170, 173, 176, 226, 240, 243, 400
FokI GGATG 3 cut(s) 102, 515, 552
FriOI GRGCYC 2 cut(s) 222, 422
Fsp4HI GCNGC 7 cut(s) 170, 173, 176, 226, 240, 243, 400
FspBI CTAG 2 cut(s) 390, 570
GluI GCNGC 7 cut(s) 170, 173, 176, 226, 240, 243, 400
HaeIII GGCC 2 cut(s) 149, 540
Hin1II CATG 3 cut(s) 148, 411, 716
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 2 cut(s) 474, 695
HphI GGTGA 4 cut(s) 185, 460, 619, 661
Hpy166II GTNNAC 2 cut(s) 284, 671
Hpy188I TCNGA 5 cut(s) 27, 42, 430, 634, 709
Hpy188III TCNNGA 1 cut(s) 553
Hpy8I GTNNAC 2 cut(s) 284, 671
HpyAV CCTTC 4 cut(s) 321, 439, 572, 659
HpyCH4III ACNGT 4 cut(s) 271, 596, 602, 630
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 3 cut(s) 100, 305, 399
HpyF10VI GCNNNNNNNGC 5 cut(s) 175, 217, 239, 466, 582
HpyF3I CTNAG 5 cut(s) 216, 221, 235, 427, 461
HpySE526I ACGT 1 cut(s) 344
Hsp92II CATG 3 cut(s) 148, 411, 716
Kzo9I GATC 4 cut(s) 10, 78, 109, 349
LguI GCTCTTC 1 cut(s) 428
LmnI GCTCC 2 cut(s) 417, 466
LpnPI CCDG 8 cut(s) 116, 225, 268, 320, 347, 366, 502, 554
Lsp1109I GCAGC 5 cut(s) 181, 184, 187, 237, 411
MabI ACCWGGT 1 cut(s) 333
MaeI CTAG 2 cut(s) 390, 570
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 4 cut(s) 265, 326, 518, 596
MalI GATC 4 cut(s) 12, 80, 111, 351
MboI GATC 4 cut(s) 10, 78, 109, 349
MboII GAAGA 4 cut(s) 119, 445, 622, 647
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 3 cut(s) 59, 222, 422
MlsI TGGCCA 1 cut(s) 540
MluCI AATT 2 cut(s) 184, 700
MluNI TGGCCA 1 cut(s) 540
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 9 cut(s) 11, 78, 129, 207, 244, 408, 444, 522, 715
Mox20I TGGCCA 1 cut(s) 540
MscI TGGCCA 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 540
MspA1I CMGCKG 3 cut(s) 215, 228, 585
MspR9I CCNGG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 722
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 5 cut(s) 175, 217, 239, 466, 582
NdeII GATC 4 cut(s) 10, 78, 109, 349
NlaIII CATG 3 cut(s) 148, 411, 716
NlaIV GGNNCC 5 cut(s) 24, 150, 232, 351, 468
NspV TTCGAA 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 722
PfeI GAWTC 1 cut(s) 474
PflMI CCANNNNNTGG 1 cut(s) 88
PkrI GCNGC 7 cut(s) 171, 174, 177, 227, 241, 244, 401
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
Psp124BI GAGCTC 2 cut(s) 222, 422
Psp1406I AACGTT 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 5 cut(s) 24, 150, 232, 351, 468
PspPI GGNCC 1 cut(s) 148
PstNI CAGNNNCTG 1 cut(s) 600
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 2 cut(s) 283, 589
RsaNI GTAC 2 cut(s) 282, 588
SacI GAGCTC 2 cut(s) 222, 422
SapI GCTCTTC 1 cut(s) 428
SatI GCNGC 7 cut(s) 170, 173, 176, 226, 240, 243, 400
Sau3AI GATC 4 cut(s) 10, 78, 109, 349
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 3 cut(s) 59, 222, 422
SexAI ACCWGGT 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 2 cut(s) 184, 700
SsiI CCGC 4 cut(s) 228, 240, 243, 583
SspMI CTAG 2 cut(s) 390, 570
SstI GAGCTC 2 cut(s) 222, 422
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 4 cut(s) 271, 596, 602, 630
TaiI ACGT 1 cut(s) 347
TaqI TCGA 5 cut(s) 53, 77, 105, 621, 643
TasI AATT 2 cut(s) 184, 700
TatI WGTACW 2 cut(s) 281, 587
TauI GCSGC 2 cut(s) 242, 245
TfiI GAWTC 1 cut(s) 474
TseI GCWGC 5 cut(s) 169, 172, 175, 225, 399
TspDTI ATGAA 7 cut(s) 48, 133, 384, 458, 554, 678, 729
Van91I CCANNNNNTGG 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 670
XspI CTAG 2 cut(s) 390, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.