Rh1CG194900
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014211
Physical Location & Seq
Forward (+)
42378335 .. 42383282
4948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG194900.1

Sequence Viewer

Length: 633 bp
ATGGAAGGAGGTCATCACAGAGGGGTTTCAAATTACGATCTTCATCAGCAGGTTTCGTTTTCCAGCAGTACCCCTCCCGCAGAACAAGTGATCCACCACGAATTGGGGTTCGTGCAGTTTGAAAATCATCATCATCATAATCAAGTTTTGAGCTTCTTGGCACCGTCTCCCGCACAACAGTCACAGCCACCGCCGCAGCAGCAGCAGCAGCCTTCTTCTCACCATCATCAGACAGCTGCCGTGAACAGTAGCATCACTGTCACCACCACCGCTGCGACAAACACCAACATGGGGTTTAGTCACAGTCATGATCTTGTTACAAGACCTTCTTGGAATAACAACGACCAGGTGGGAACGCTGGATCCGAAGGGTGTCAGTGATGAAAACGGAACCGGTAATGGTAGCGATTGCAGCAATTCATGGTGGAGGAGCTCAAACTCAGAGAAAAGCAAGATGAAGGTGAGGAGAAAGCTCAGAGAGCCAAGATTCTGTTTCCAAACCAGGAGTGATGTGGATGTGCTTGATGATGGTTACAAGTGGAGGAAATATGGCCAGAAAGTTGTCAAGAACAGCCTTCATCCTAGGTACGTTATATTGCTTATTTTATTTCTTTGTTTTTTTTTTTTTAAATGA

Protein Analysis

210

Amino Acids

23.86

Weight (kDa)

8.81

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 175 - 196 7.7e-07 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44745
fragaria_vesca FvH4_7g10440 FvH4_7g10440 FvH4_7g10440
malus_domestica MD07G1110400.v1.1
prunus_persica Prupe.2G133800_v2.0.a1 Prupe.2G133800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348121
rosa_laevigata RLG00000028687
rosa_roxburghii Rroxscaffold_4G00307200
rosa_rugosa Rorug01G0192600
rosa_samantha Rh1AG210300 Rh1BG176000 Rh1CG194900 Rh1DG205800
rosa_wichuraiana Rw0G011400 Rw1G017560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 5 cut(s) 78, 171, 191, 194, 270
AclWI GGATC 3 cut(s) 85, 356, 369
AcoI YGGCCR 1 cut(s) 550
AfaI GTAC 2 cut(s) 70, 587
AfiI CCNNNNNNNGG 2 cut(s) 103, 291
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 2 cut(s) 30, 122
AjnI CCWGG 2 cut(s) 345, 500
AloI GAACNNNNNNTCC 4 cut(s) 75, 107, 346, 378
AluBI AGCT 4 cut(s) 153, 236, 432, 472
AluI AGCT 4 cut(s) 153, 236, 432, 472
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 3 cut(s) 85, 356, 369
AoxI GGCC 1 cut(s) 550
ApeKI GCWGC 8 cut(s) 196, 199, 202, 205, 208, 236, 272, 411
AsiGI ACCGGT 1 cut(s) 392
AspA2I CCTAGG 1 cut(s) 581
AsuHPI GGTGA 3 cut(s) 212, 253, 472
AvrII CCTAGG 1 cut(s) 581
BalI TGGCCA 1 cut(s) 552
BamHI GGATCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 434
BbvI GCAGC 8 cut(s) 208, 211, 214, 217, 220, 223, 259, 423
BccI CCATC 2 cut(s) 231, 521
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 347, 502
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 9 cut(s) 194, 197, 200, 203, 206, 209, 237, 273, 412
BlnI CCTAGG 1 cut(s) 581
BlsI GCNGC 9 cut(s) 195, 198, 201, 204, 207, 210, 238, 274, 413
Bme1390I CCNGG 2 cut(s) 347, 502
BmiI GGNNCC 3 cut(s) 162, 363, 391
BmrFI CCNGG 2 cut(s) 347, 502
BmsI GCATC 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 581
BsaWI WCCGGW 1 cut(s) 392
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 291
Bse118I RCCGGY 1 cut(s) 392
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 2 cut(s) 347, 502
BseDI CCNNGG 1 cut(s) 581
BseGI GGATG 2 cut(s) 520, 577
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 103, 291
BseMII CTCAG 2 cut(s) 453, 487
BseRI GAGGAG 2 cut(s) 442, 478
BseXI GCAGC 8 cut(s) 208, 211, 214, 217, 220, 223, 259, 423
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 552
BshNI GGYRCC 1 cut(s) 160
BshTI ACCGGT 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 434
BsiSI CCGG 1 cut(s) 393
BslI CCNNNNNNNGG 2 cut(s) 103, 291
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 434
Bsp143I GATC 4 cut(s) 37, 90, 310, 361
BspACI CCGC 5 cut(s) 78, 171, 191, 194, 270
BspANI GGCC 1 cut(s) 552
BspCNI CTCAG 2 cut(s) 452, 486
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 162, 363, 391
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 3 cut(s) 85, 356, 369
BspT107I GGYRCC 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 4 cut(s) 37, 90, 310, 361
BssT1I CCWWGG 1 cut(s) 581
Bst2UI CCWGG 2 cut(s) 347, 502
Bst4CI ACNGT 5 cut(s) 165, 180, 248, 259, 305
BstDEI CTNAG 2 cut(s) 439, 473
BstF5I GGATG 2 cut(s) 520, 577
BstKTI GATC 4 cut(s) 40, 93, 313, 364
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 4 cut(s) 37, 90, 310, 361
BstMWI GCNNNNNNNGC 7 cut(s) 193, 199, 202, 205, 208, 411, 478
BstNI CCWGG 2 cut(s) 347, 502
BstSCI CCNGG 2 cut(s) 345, 500
BstV1I GCAGC 8 cut(s) 208, 211, 214, 217, 220, 223, 259, 423
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 1 cut(s) 552
BtsCI GGATG 2 cut(s) 520, 577
BtsIMutI CAGTG 2 cut(s) 255, 382
BveI ACCTGC 1 cut(s) 40
CciI TCATGA 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 392
CsiI ACCWGGT 1 cut(s) 345
Csp6I GTAC 2 cut(s) 69, 586
CspAI ACCGGT 1 cut(s) 392
CviAII CATG 3 cut(s) 289, 308, 420
CviJI RGCY 9 cut(s) 153, 187, 211, 236, 432, 472, 481, 552, 573
CviKI_1 RGCY 9 cut(s) 153, 187, 211, 236, 432, 472, 481, 552, 573
CviQI GTAC 2 cut(s) 69, 586
DdeI CTNAG 2 cut(s) 439, 473
DpnI GATC 4 cut(s) 39, 92, 312, 363
DpnII GATC 4 cut(s) 37, 90, 310, 361
DraI TTTAAA 1 cut(s) 628
EaeI YGGCCR 1 cut(s) 550
Ecl136II GAGCTC 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 345, 500
EcoT14I CCWWGG 1 cut(s) 581
EcoT38I GRGCYC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 581
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 3 cut(s) 292, 311, 423
FaiI YATR 6 cut(s) 138, 290, 309, 421, 549, 593
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FatI CATG 3 cut(s) 288, 307, 419
FauI CCCGC 2 cut(s) 85, 178
Fnu4HI GCNGC 9 cut(s) 194, 197, 200, 203, 206, 209, 237, 273, 412
FokI GGATG 2 cut(s) 527, 564
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 9 cut(s) 194, 197, 200, 203, 206, 209, 237, 273, 412
FspBI CTAG 1 cut(s) 582
GluI GCNGC 9 cut(s) 194, 197, 200, 203, 206, 209, 237, 273, 412
HaeIII GGCC 1 cut(s) 552
HapII CCGG 1 cut(s) 393
Hin1II CATG 3 cut(s) 292, 311, 423
HinfI GANTC 1 cut(s) 486
HpaII CCGG 1 cut(s) 393
HphI GGTGA 3 cut(s) 212, 253, 472
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 231, 366, 442, 476
Hpy188III TCNNGA 2 cut(s) 308, 565
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 5 cut(s) 222, 336, 361, 451, 584
HpyCH4III ACNGT 5 cut(s) 165, 180, 248, 259, 305
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 2 cut(s) 115, 411
HpyF10VI GCNNNNNNNGC 7 cut(s) 193, 199, 202, 205, 208, 411, 478
HpyF3I CTNAG 2 cut(s) 439, 473
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 3 cut(s) 292, 311, 423
Kzo9I GATC 4 cut(s) 37, 90, 310, 361
LmnI GCTCC 1 cut(s) 429
LpnPI CCDG 9 cut(s) 35, 76, 332, 344, 359, 406, 487, 514, 566
Lsp1109I GCAGC 8 cut(s) 208, 211, 214, 217, 220, 223, 259, 423
LweI GCATC 1 cut(s) 261
MabI ACCWGGT 1 cut(s) 345
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 5 cut(s) 180, 259, 299, 316, 530
MalI GATC 4 cut(s) 39, 92, 312, 363
MboI GATC 4 cut(s) 37, 90, 310, 361
MboII GAAGA 2 cut(s) 32, 207
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 434
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 3 cut(s) 31, 101, 415
MluNI TGGCCA 1 cut(s) 552
MnlI CCTC 5 cut(s) 14, 84, 420, 456, 534
Mox20I TGGCCA 1 cut(s) 552
MscI TGGCCA 1 cut(s) 552
MseI TTAA 1 cut(s) 627
MslI CAYNNNNRTG 2 cut(s) 287, 306
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 2 cut(s) 236, 272
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 2 cut(s) 347, 502
MvaI CCWGG 2 cut(s) 347, 502
MwoI GCNNNNNNNGC 7 cut(s) 193, 199, 202, 205, 208, 411, 478
NdeII GATC 4 cut(s) 37, 90, 310, 361
NlaIII CATG 3 cut(s) 292, 311, 423
NlaIV GGNNCC 3 cut(s) 162, 363, 391
NmuCI GTSAC 3 cut(s) 180, 259, 299
PagI TCATGA 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 362
PfeI GAWTC 1 cut(s) 486
PflMI CCANNNNNTGG 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 9 cut(s) 195, 198, 201, 204, 207, 210, 238, 274, 413
Psp124BI GAGCTC 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 345, 500
PspGI CCWGG 2 cut(s) 345, 500
PspN4I GGNNCC 3 cut(s) 162, 363, 391
PsuI RGATCY 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 70, 587
RsaNI GTAC 2 cut(s) 69, 586
RseI CAYNNNNRTG 2 cut(s) 287, 306
SacI GAGCTC 1 cut(s) 434
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 9 cut(s) 194, 197, 200, 203, 206, 209, 237, 273, 412
Sau3AI GATC 4 cut(s) 37, 90, 310, 361
ScrFI CCNGG 2 cut(s) 347, 502
SduI GDGCHC 1 cut(s) 434
SexAI ACCWGGT 1 cut(s) 345
SfaNI GCATC 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 287, 306
Sse9I AATT 3 cut(s) 31, 101, 415
SsiI CCGC 5 cut(s) 78, 171, 191, 194, 270
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 345, 500
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 5 cut(s) 165, 180, 248, 259, 305
TaiI ACGT 1 cut(s) 591
TasI AATT 3 cut(s) 31, 101, 415
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 1 cut(s) 486
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 2 cut(s) 262, 382
TseFI GTSAC 3 cut(s) 180, 259, 299
TseI GCWGC 8 cut(s) 196, 199, 202, 205, 208, 236, 272, 411
Tsp45I GTSAC 3 cut(s) 180, 259, 299
TspDTI ATGAA 5 cut(s) 32, 396, 408, 470, 566
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 2 cut(s) 262, 382
Van91I CCANNNNNTGG 1 cut(s) 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmaJI CCTAGG 1 cut(s) 581
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.