FvH4_7g10440
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014211
Physical Location & Seq
Forward (+)
9872264 .. 9875279
3016 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10440.t2

Sequence Viewer

Length: 765 bp
ATGGAAGGAGCTCATCTCAGAGGGGTTTCGAGTTACGATCTTCATCAGCAGGTTTCGTTTTCCAGCAGTATCTCTCCCGCAGATCAAGGGATCCACCACGAAATGGGGTTTGTGCAGTTTGAAGATCATCATCATCATCATAATCAAGTTTTGAGCTTCTTGGCACCCTCTCCCGCACAGCAGTCACATCCACCACCTCCACCGCCGCCGCCGCAGCAGCAGTCTTCTTCTTCTCATCATCATCAGACAACTGCAGTGAACAGTTGTGGCATCACTGTCACCACCACCGCTGCCACAAACACCAACACGGGGTTCAGTCACAGTCATGATCTTGTTACAAAACCTTCTTGGAATAACAACGACCAGGCAGCAACGCTAGATCCGAAGGGTGTCAGTGATGAAACCGGAACCGGTAATGGTAGCGATTGCAGCAATTCATGGTGGAGGAGCTCAAACTCGGAGAAAAACAAGATGAAGGTAAGGAGAAAGCTCAGAGAGCCAAGGTTCTGTTTTCAAACCAGAAGTGAAGTGGATGTCCTTGATGATGGTTACAAGTGGAGGAAATATGGCCAGAAAGTTGTCAAGAACAGCCTTCATCCTAGAAGTTACTACCGGTGCACTCACAGTAACTGTCGGGTGAAGAAGAGGGTTGAACGACTGTCTGAAGATTGTCGTATGGTGATAACAACCTATGAAGGTAGACACAACCATATCCCTTCAGATGACTCTAATTCATCTGAGCATGAATGCTTTACCTCTTTCTAG

Protein Analysis

255

Amino Acids

28.69

Weight (kDa)

7.76

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44745
fragaria_vesca FvH4_7g10440 FvH4_7g10440 FvH4_7g10440
malus_domestica MD07G1110400.v1.1
prunus_persica Prupe.2G133800_v2.0.a1 Prupe.2G133800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348121
rosa_laevigata RLG00000028687
rosa_roxburghii Rroxscaffold_4G00307200
rosa_rugosa Rorug01G0192600
rosa_samantha Rh1AG210300 Rh1BG176000 Rh1CG194900 Rh1DG205800
rosa_wichuraiana Rw0G011400 Rw1G017560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AccB1I GGYRCC 1 cut(s) 163
AccB7I CCANNNNNTGG 1 cut(s) 103
AccI GTMKAC 1 cut(s) 700
AciI CCGC 7 cut(s) 78, 174, 203, 206, 209, 212, 288
AclWI GGATC 3 cut(s) 85, 98, 374
AcoI YGGCCR 1 cut(s) 568
AcuI CTGAAG 2 cut(s) 684, 702
AfiI CCNNNNNNNGG 2 cut(s) 103, 309
AgeI ACCGGT 2 cut(s) 410, 612
AgsI TTSAA 3 cut(s) 122, 515, 653
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 4 cut(s) 11, 156, 450, 490
AluI AGCT 4 cut(s) 11, 156, 450, 490
Alw21I GWGCWC 3 cut(s) 13, 452, 620
Alw44I GTGCAC 1 cut(s) 616
AlwI GGATC 3 cut(s) 85, 98, 374
AlwNI CAGNNNCTG 1 cut(s) 630
AoxI GGCC 1 cut(s) 568
ApaLI GTGCAC 1 cut(s) 616
ApeKI GCWGC 5 cut(s) 214, 217, 290, 368, 429
AsiGI ACCGGT 2 cut(s) 410, 612
AsuHPI GGTGA 3 cut(s) 271, 649, 691
BaeGI GKGCMC 1 cut(s) 620
BalI TGGCCA 1 cut(s) 570
BamHI GGATCC 1 cut(s) 90
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 2 cut(s) 13, 452
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 3 cut(s) 13, 452, 620
BbvI GCAGC 5 cut(s) 226, 229, 277, 380, 441
BccI CCATC 1 cut(s) 539
BciT130I CCWGG 1 cut(s) 365
BfaI CTAG 3 cut(s) 377, 600, 763
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 8 cut(s) 206, 209, 212, 215, 218, 291, 369, 430
BlsI GCNGC 8 cut(s) 207, 210, 213, 216, 219, 292, 370, 431
Bme1390I CCNGG 1 cut(s) 365
BmiI GGNNCC 3 cut(s) 92, 165, 409
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 216
BplI GAGNNNNNCTC 1 cut(s) 32
BsaBI GATNNNNATC 2 cut(s) 42, 129
BsaJI CCNNGG 1 cut(s) 500
BsaWI WCCGGW 3 cut(s) 404, 410, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 309
Bse118I RCCGGY 2 cut(s) 410, 612
Bse8I GATNNNNATC 2 cut(s) 42, 129
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 500
BseGI GGATG 3 cut(s) 187, 538, 595
BseJI GATNNNNATC 2 cut(s) 42, 129
BseLI CCNNNNNNNGG 2 cut(s) 103, 309
BseMII CTCAG 3 cut(s) 31, 505, 729
BseRI GAGGAG 1 cut(s) 460
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 5 cut(s) 226, 229, 277, 380, 441
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 570
BshNI GGYRCC 1 cut(s) 163
BshTI ACCGGT 2 cut(s) 410, 612
BsiHKAI GWGCWC 3 cut(s) 13, 452, 620
BsiSI CCGG 3 cut(s) 405, 411, 613
BslI CCNNNNNNNGG 2 cut(s) 103, 309
BsmI GAATGC 1 cut(s) 752
BsnI GGCC 1 cut(s) 570
Bsp1286I GDGCHC 3 cut(s) 13, 452, 620
Bsp143I GATC 6 cut(s) 37, 82, 90, 124, 328, 379
BspACI CCGC 7 cut(s) 78, 174, 203, 206, 209, 212, 288
BspANI GGCC 1 cut(s) 570
BspCNI CTCAG 3 cut(s) 30, 504, 730
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 92, 165, 409
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 3 cut(s) 85, 98, 374
BspT107I GGYRCC 1 cut(s) 163
BsrFI RCCGGY 2 cut(s) 410, 612
BssAI RCCGGY 2 cut(s) 410, 612
BssECI CCNNGG 1 cut(s) 500
BssMI GATC 6 cut(s) 37, 82, 90, 124, 328, 379
BssT1I CCWWGG 1 cut(s) 500
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 6 cut(s) 263, 277, 323, 626, 632, 660
Bst6I CTCTTC 1 cut(s) 638
BstDEI CTNAG 3 cut(s) 17, 491, 738
BstF5I GGATG 3 cut(s) 187, 538, 595
BstKTI GATC 6 cut(s) 40, 85, 93, 127, 331, 382
BstMBI GATC 6 cut(s) 37, 82, 90, 124, 328, 379
BstMWI GCNNNNNNNGC 5 cut(s) 211, 214, 217, 429, 496
BstNI CCWGG 1 cut(s) 365
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 620
BstV1I GCAGC 5 cut(s) 226, 229, 277, 380, 441
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 2 cut(s) 90, 379
BstYI RGATCY 2 cut(s) 90, 379
BsuRI GGCC 1 cut(s) 570
BtsCI GGATG 3 cut(s) 187, 538, 595
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 3 cut(s) 261, 273, 400
BveI ACCTGC 1 cut(s) 40
CaiI CAGNNNCTG 1 cut(s) 630
CciI TCATGA 1 cut(s) 325
Cfr10I RCCGGY 2 cut(s) 410, 612
CspAI ACCGGT 2 cut(s) 410, 612
CviAII CATG 3 cut(s) 326, 438, 743
CviJI RGCY 7 cut(s) 11, 156, 450, 490, 499, 570, 591
CviKI_1 RGCY 7 cut(s) 11, 156, 450, 490, 499, 570, 591
DdeI CTNAG 3 cut(s) 17, 491, 738
DpnI GATC 6 cut(s) 39, 84, 92, 126, 330, 381
DpnII GATC 6 cut(s) 37, 82, 90, 124, 328, 379
EaeI YGGCCR 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
Ecl136II GAGCTC 2 cut(s) 11, 450
Eco130I CCWWGG 1 cut(s) 500
Eco24I GRGCYC 2 cut(s) 13, 452
Eco53kI GAGCTC 2 cut(s) 11, 450
Eco57I CTGAAG 2 cut(s) 684, 702
EcoICRI GAGCTC 2 cut(s) 11, 450
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 500
EcoT38I GRGCYC 2 cut(s) 13, 452
ErhI CCWWGG 1 cut(s) 500
FaeI CATG 3 cut(s) 329, 441, 746
FaiI YATR 8 cut(s) 141, 327, 439, 567, 677, 693, 711, 744
FatI CATG 3 cut(s) 325, 437, 742
FauI CCCGC 2 cut(s) 85, 181
FblI GTMKAC 1 cut(s) 700
Fnu4HI GCNGC 8 cut(s) 206, 209, 212, 215, 218, 291, 369, 430
FokI GGATG 3 cut(s) 174, 545, 582
FriOI GRGCYC 2 cut(s) 13, 452
Fsp4HI GCNGC 8 cut(s) 206, 209, 212, 215, 218, 291, 369, 430
FspBI CTAG 3 cut(s) 377, 600, 763
GluI GCNGC 8 cut(s) 206, 209, 212, 215, 218, 291, 369, 430
HaeIII GGCC 1 cut(s) 570
HapII CCGG 3 cut(s) 405, 411, 613
Hin1II CATG 3 cut(s) 329, 441, 746
HinfI GANTC 1 cut(s) 725
HpaII CCGG 3 cut(s) 405, 411, 613
HphI GGTGA 3 cut(s) 271, 649, 691
Hpy166II GTNNAC 3 cut(s) 259, 618, 701
Hpy188I TCNGA 8 cut(s) 20, 246, 384, 460, 494, 664, 721, 739
Hpy188III TCNNGA 2 cut(s) 326, 583
Hpy8I GTNNAC 3 cut(s) 259, 618, 701
HpyAV CCTTC 6 cut(s) 354, 379, 469, 602, 689, 726
HpyCH4III ACNGT 6 cut(s) 263, 277, 323, 626, 632, 660
HpyCH4V TGCA 4 cut(s) 115, 254, 429, 618
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 214, 217, 429, 496
HpyF3I CTNAG 3 cut(s) 17, 491, 738
Hsp92II CATG 3 cut(s) 329, 441, 746
Kzo9I GATC 6 cut(s) 37, 82, 90, 124, 328, 379
LmnI GCTCC 2 cut(s) 8, 447
LpnPI CCDG 9 cut(s) 35, 76, 350, 377, 418, 424, 532, 584, 626
Lsp1109I GCAGC 5 cut(s) 226, 229, 277, 380, 441
LweI GCATC 1 cut(s) 279
MaeI CTAG 3 cut(s) 377, 600, 763
MaeIII GTNAC 8 cut(s) 32, 183, 277, 317, 334, 548, 605, 626
MalI GATC 6 cut(s) 39, 84, 92, 126, 330, 381
MboI GATC 6 cut(s) 37, 82, 90, 124, 328, 379
MboII GAAGA 8 cut(s) 32, 134, 216, 219, 222, 652, 655, 677
MflI RGATCY 2 cut(s) 90, 379
MhlI GDGCHC 3 cut(s) 13, 452, 620
MlsI TGGCCA 1 cut(s) 570
MluCI AATT 2 cut(s) 433, 730
MluNI TGGCCA 1 cut(s) 570
MlyI GAGTC 1 cut(s) 719
MnlI CCTC 6 cut(s) 14, 178, 207, 438, 552, 639
Mox20I TGGCCA 1 cut(s) 570
MscI TGGCCA 1 cut(s) 570
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 570
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 3 cut(s) 405, 411, 613
MspR9I CCNGG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 752
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 5 cut(s) 211, 214, 217, 429, 496
NdeII GATC 6 cut(s) 37, 82, 90, 124, 328, 379
NlaIII CATG 3 cut(s) 329, 441, 746
NlaIV GGNNCC 3 cut(s) 92, 165, 409
NmuCI GTSAC 3 cut(s) 183, 277, 317
PagI TCATGA 1 cut(s) 325
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PctI GAATGC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 103
PinAI ACCGGT 2 cut(s) 410, 612
PkrI GCNGC 8 cut(s) 207, 210, 213, 216, 219, 292, 370, 431
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
Psp124BI GAGCTC 2 cut(s) 13, 452
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 92, 165, 409
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 630
PsuI RGATCY 2 cut(s) 90, 379
RseI CAYNNNNRTG 1 cut(s) 324
SacI GAGCTC 2 cut(s) 13, 452
SatI GCNGC 8 cut(s) 206, 209, 212, 215, 218, 291, 369, 430
Sau3AI GATC 6 cut(s) 37, 82, 90, 124, 328, 379
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 3 cut(s) 13, 452, 620
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 2 cut(s) 433, 730
SsiI CCGC 7 cut(s) 78, 174, 203, 206, 209, 212, 288
SspMI CTAG 3 cut(s) 377, 600, 763
SstI GAGCTC 2 cut(s) 13, 452
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 500
TaaI ACNGT 6 cut(s) 263, 277, 323, 626, 632, 660
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 433, 730
TauI GCSGC 3 cut(s) 208, 211, 214
TscAI CASTG 3 cut(s) 261, 280, 400
TseFI GTSAC 3 cut(s) 183, 277, 317
TseI GCWGC 5 cut(s) 214, 217, 290, 368, 429
Tsp45I GTSAC 3 cut(s) 183, 277, 317
TspDTI ATGAA 8 cut(s) 32, 414, 426, 488, 584, 708, 723, 759
TspRI CASTG 3 cut(s) 261, 280, 400
Van91I CCANNNNNTGG 1 cut(s) 103
VneI GTGCAC 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 700
XspI CTAG 3 cut(s) 377, 600, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.