Rorug01G0192600
WRKY Family

WRKY transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014211
Physical Location & Seq
Forward (+)
26731303 .. 26731602
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0192600.1

Sequence Viewer

Length: 300 bp
ATGGCAACTAGACAAGATGAAGGAAACATAATAAAGCTAGTCTACAAGGCATCAGTTTCAGGGTGCGTATCAAGCTTAATCCAATTGATCGAAACAAACCCACTCATTCTTAGAAAACTTTCATTGACTGCATTCACTGAAATTCCTTTGCATGTATCTGCTTTGCTCGGCCACCATGAATTTACCATAGCCCTTCTCACCCATAATCCGAACCTGGCGAAGGAATTGGACTCTTCAGAAGCTCACCTCTCCACTGCGCTTCTGCCGAGGGCCACGTGGAGATTGTTCAAGCTTTGTTAA

Protein Analysis

99

Amino Acids

10.95

Weight (kDa)

7.87

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44745
fragaria_vesca FvH4_7g10440 FvH4_7g10440 FvH4_7g10440
malus_domestica MD07G1110400.v1.1
prunus_persica Prupe.2G133800_v2.0.a1 Prupe.2G133800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0348121
rosa_laevigata RLG00000028687
rosa_roxburghii Rroxscaffold_4G00307200
rosa_rugosa Rorug01G0192600
rosa_samantha Rh1AG210300 Rh1BG176000 Rh1CG194900 Rh1DG205800
rosa_wichuraiana Rw0G011400 Rw1G017560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 2 cut(s) 141, 179
AcuI CTGAAG 1 cut(s) 219
AcvI CACGTG 1 cut(s) 276
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 1 cut(s) 289
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 4 cut(s) 37, 75, 242, 292
AluI AGCT 4 cut(s) 37, 75, 242, 292
AoxI GGCC 2 cut(s) 169, 270
ApoI RAATTY 2 cut(s) 141, 179
Asp700I GAANNNNTTC 1 cut(s) 118
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 190, 236
BbrPI CACGTG 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 215
BfaI CTAG 2 cut(s) 9, 38
Bme1390I CCNGG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 220
BshFI GGCC 2 cut(s) 171, 272
BslI CCNNNNNNNGG 1 cut(s) 220
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 2 cut(s) 171, 272
Bsp143I GATC 1 cut(s) 87
BspANI GGCC 2 cut(s) 171, 272
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 238
BstBAI YACGTR 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 213
BsuRI GGCC 2 cut(s) 171, 272
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 135, 252
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 270
CviAII CATG 2 cut(s) 152, 176
CviJI RGCY 7 cut(s) 37, 75, 171, 191, 242, 272, 292
CviKI_1 RGCY 7 cut(s) 37, 75, 171, 191, 242, 272, 292
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 219
Eco72I CACGTG 1 cut(s) 276
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 213
FaeI CATG 2 cut(s) 155, 179
FaiI YATR 5 cut(s) 29, 153, 177, 188, 204
FatI CATG 2 cut(s) 151, 175
FblI GTMKAC 1 cut(s) 42
FspBI CTAG 2 cut(s) 9, 38
GlaI GCGC 1 cut(s) 258
HaeIII GGCC 2 cut(s) 171, 272
HhaI GCGC 1 cut(s) 259
Hin1II CATG 2 cut(s) 155, 179
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 2 cut(s) 73, 290
HinfI GANTC 1 cut(s) 230
HphI GGTGA 2 cut(s) 190, 236
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 210, 238
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 14, 203, 214
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 2 cut(s) 131, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 2 cut(s) 155, 179
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 1 cut(s) 87
LpnPI CCDG 3 cut(s) 45, 200, 227
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 9, 38
MaeII ACGT 1 cut(s) 275
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 1 cut(s) 225
MfeI CAATTG 1 cut(s) 83
MluCI AATT 4 cut(s) 83, 141, 179, 224
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 2 cut(s) 257, 261
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 2 cut(s) 77, 298
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 131
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeII GATC 1 cut(s) 87
NlaIII CATG 2 cut(s) 155, 179
NmeAIII GCCGAG 2 cut(s) 147, 291
NspI RCATGY 1 cut(s) 155
PctI GAATGC 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 118
PleI GAGTC 1 cut(s) 224
PmaCI CACGTG 1 cut(s) 276
PmlI CACGTG 1 cut(s) 276
PpsI GAGTC 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 213
PspCI CACGTG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 213
PspPI GGNCC 1 cut(s) 270
SaqAI TTAA 2 cut(s) 77, 298
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 215
SetI ASST 7 cut(s) 39, 77, 216, 244, 249, 278, 294
SfaNI GCATC 1 cut(s) 59
Sse9I AATT 4 cut(s) 83, 141, 179, 224
SspMI CTAG 2 cut(s) 9, 38
StyD4I CCNGG 1 cut(s) 213
TaiI ACGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 90
TasI AATT 4 cut(s) 83, 141, 179, 224
Tru1I TTAA 2 cut(s) 77, 298
Tru9I TTAA 2 cut(s) 77, 298
TscAI CASTG 2 cut(s) 142, 259
TspDTI ATGAA 3 cut(s) 33, 111, 192
TspRI CASTG 2 cut(s) 142, 259
XagI CCTNNNNNAGG 1 cut(s) 218
XapI RAATTY 2 cut(s) 141, 179
XceI RCATGY 1 cut(s) 155
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 2 cut(s) 9, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.