AT2G44820

Domain of unknown function (DUF4602)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007194
Physical Location & Seq
Forward (+)
18484074 .. 18485873
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44820.2

Sequence Viewer

Length: 642 bp
ATGGAAAGCTCTTTGTTTAAAACCTCTTCCGATTTTTGTATCAGAAAAACTGAAATAATGGTGTATAAGCGCAAGTCAATGGAGAAGAAAAAGGAAGGCATGGGTTCTACTATTGATCAAAACCTGAGCTTTAAGAATATTATGAAAGATGTTGCACTCTTTGGTTCTTCGCATATGACATGGAAGGATAAGAAAGCACTGGAGGATAAGAAAGTGACTGCACTTGGTGGAAAGGCACAAAAGATGCATAGGCTACCGCTGAGTGTAGCTCGAGTGCAGATGAAGAAACAGAAAGATAGAGAAGAGAAGATGTTAGAACAGAATGTGATTCTTGGCAGATTTGGTGGGGGTGGAAGTAGCAGTAGGAAACCCGCAGAGAGAAAGCGTACGCCAGAAGAGAGAGTATTGAAGTCAACTGGAGGGATTTTCAAAGGCGGTGTTCTTGATGTTAAGCATTTGCTACGTTCTGGTCCTTCAAGTAGTAGTGACAGAGATTTCAAGACGAAGAAACCCAGTAGGGTCGAGAAGAACTTGGGAGGAGGAGGTGATGGAGGAGGCATCAAGTCTAAGGGAAAAAAGAAAGGAGGCAAAAATAAGAATAAAGGAAAGAAGAAAGGAGGTGGCAAGAAGAGAGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4602

Protein Analysis

213

Amino Acids

23.45

Weight (kDa)

10.46

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FSAF1 PF15375 6 - 109 9.4e-14 40S small subunit processome assembly factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 257, 372, 435
AdeI CACNNNGTG 1 cut(s) 227
AfaI GTAC 1 cut(s) 388
AgsI TTSAA 4 cut(s) 409, 430, 477, 499
AluBI AGCT 3 cut(s) 9, 129, 269
AluI AGCT 3 cut(s) 9, 129, 269
Ama87I CYCGRG 1 cut(s) 270
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 1 cut(s) 470
BccI CCATC 1 cut(s) 542
BclI TGATCA 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 470
BmrI ACTGGG 1 cut(s) 507
BmsI GCATC 2 cut(s) 234, 567
BmuI ACTGGG 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BpmI CTGGAG 2 cut(s) 221, 438
Bpu10I CCTNAGC 1 cut(s) 125
Bse1I ACTGG 3 cut(s) 204, 421, 513
BseMII CTCAG 2 cut(s) 116, 251
BseNI ACTGG 3 cut(s) 204, 421, 513
BseRI GAGGAG 3 cut(s) 552, 555, 567
BsgI GTGCAG 2 cut(s) 204, 296
BsiHKCI CYCGRG 1 cut(s) 270
BsiWI CGTACG 1 cut(s) 386
BsoBI CYCGRG 1 cut(s) 270
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 3 cut(s) 257, 372, 435
BspCNI CTCAG 2 cut(s) 117, 252
BsrI ACTGG 3 cut(s) 204, 421, 513
BssMI GATC 1 cut(s) 115
Bst6I CTCTTC 4 cut(s) 31, 297, 390, 623
BstDEI CTNAG 3 cut(s) 125, 260, 567
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 387
CviAII CATG 2 cut(s) 100, 180
CviJI RGCY 4 cut(s) 9, 129, 253, 269
CviKI_1 RGCY 4 cut(s) 9, 129, 253, 269
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 3 cut(s) 125, 260, 567
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
DraI TTTAAA 1 cut(s) 19
DraIII CACNNNGTG 1 cut(s) 227
Eam1104I CTCTTC 4 cut(s) 31, 297, 390, 623
EarI CTCTTC 4 cut(s) 31, 297, 390, 623
Eco47I GGWCC 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 249
FaeI CATG 2 cut(s) 103, 183
FaiI YATR 7 cut(s) 66, 101, 143, 174, 176, 181, 249
FatI CATG 2 cut(s) 99, 179
FauI CCCGC 1 cut(s) 379
FauNDI CATATG 1 cut(s) 174
FbaI TGATCA 1 cut(s) 115
GlaI GCGC 1 cut(s) 71
GsuI CTGGAG 2 cut(s) 221, 438
HhaI GCGC 1 cut(s) 72
Hin1II CATG 2 cut(s) 103, 183
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 1 cut(s) 328
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 2 cut(s) 31, 44
Hpy188III TCNNGA 3 cut(s) 443, 499, 523
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 3 cut(s) 89, 178, 483
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 4 cut(s) 155, 221, 247, 277
HpyF3I CTNAG 3 cut(s) 125, 260, 567
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 2 cut(s) 103, 183
HspAI GCGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 6 cut(s) 137, 185, 402, 405, 453, 526
LweI GCATC 2 cut(s) 234, 567
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 2 cut(s) 214, 485
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 249
MseI TTAA 3 cut(s) 18, 132, 450
MspA1I CMGCKG 1 cut(s) 259
NdeI CATATG 1 cut(s) 174
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 103, 183
NmuCI GTSAC 2 cut(s) 214, 485
NsiI ATGCAT 1 cut(s) 249
PaeR7I CTCGAG 1 cut(s) 270
PfeI GAWTC 1 cut(s) 328
Pfl23II CGTACG 1 cut(s) 386
PspLI CGTACG 1 cut(s) 386
PspPI GGNCC 1 cut(s) 470
PspXI VCTCGAGB 1 cut(s) 270
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SaqAI TTAA 3 cut(s) 18, 132, 450
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 470
SetI ASST 8 cut(s) 11, 26, 126, 131, 271, 466, 547, 622
SfaNI GCATC 2 cut(s) 234, 567
Sfr274I CTCGAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 470
SlaI CTCGAG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
SsiI CCGC 3 cut(s) 257, 372, 435
SspI AATATT 1 cut(s) 139
TaiI ACGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 271, 522
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 3 cut(s) 18, 132, 450
Tru9I TTAA 3 cut(s) 18, 132, 450
TscAI CASTG 1 cut(s) 204
TseFI GTSAC 2 cut(s) 214, 485
Tsp45I GTSAC 2 cut(s) 214, 485
TspDTI ATGAA 2 cut(s) 158, 296
TspRI CASTG 1 cut(s) 204
VpaK11BI GGWCC 1 cut(s) 470
XhoI CTCGAG 1 cut(s) 270
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.