Rh5AG306300

Domain of unknown function (DUF4602)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007194
Physical Location & Seq
Forward (+)
43659863 .. 43776874
117012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG306300.1

Sequence Viewer

Length: 549 bp
ATGCATAAGAACAAGGGAGGCGACAGAGGGCGACAAATGGGTAGGAAGAACCAGAAGCCGGAAACCAAGGACCAAGAATTGGACTCCACCGACCTAAGAATGGACATGAGGGAGATTTCCAAGCGTATTGAGCTCTTGGGCTCTTCTCATATGACATGGAAGGAGAGGAAGGAGTTGGAGAATAAGAAGGTGGTTGCTCTAGGCGGAAAGCCTCCAAAGAAGCAGAGACTACCTCTAAGTATAGCAAGAGTGGTCATGAAGAAGCAAAAGGACAGGGAGCAAAAGCAGCTACAAGAGAATGTGATTCTTGGACGTTTTGGAGGGAAATCCGGAGGTGGTTCAAAAAGATCTGTGGAGAAGCGAAGGCCTGAGGACAGGGTTCTAAGAGCAAGTGAAGGTTACTTCAAAAATGGTGTACTTGATGTGAAGCATTTGTTACGTCCAACATCATCCAGAGACAGGGATGCTGGTGCCCATGTGAACTTCTCAGGTCCAAAGAAGGGAGGTGGAAAAAACAAAGGGAAGAAGGGTGGTAAGAAGCGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4602

Protein Analysis

182

Amino Acids

20.6

Weight (kDa)

10.72

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FSAF1 PF15375 12 - 121 7.5e-16 40S small subunit processome assembly factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 470
AccB7I CCANNNNNTGG 1 cut(s) 79
AccIII TCCGGA 1 cut(s) 329
AciI CCGC 1 cut(s) 204
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 5 cut(s) 58, 79, 100, 459, 500
AgsI TTSAA 2 cut(s) 342, 406
AluBI AGCT 2 cut(s) 133, 289
AluI AGCT 2 cut(s) 133, 289
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 220, 450
Aor13HI TCCGGA 1 cut(s) 329
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 1 cut(s) 286
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 2 cut(s) 70, 491
AvaII GGWCC 2 cut(s) 70, 491
AxyI CCTNAGG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 475
BanI GGYRCC 1 cut(s) 470
BanII GRGCYC 2 cut(s) 135, 143
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 220, 450
BfaI CTAG 1 cut(s) 200
BfoI RGCGCY 1 cut(s) 544
BglII AGATCT 1 cut(s) 347
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme18I GGWCC 2 cut(s) 70, 491
BmgT120I GGNCC 2 cut(s) 70, 491
BmiI GGNNCC 1 cut(s) 472
BmsI GCATC 1 cut(s) 454
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 329
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 79, 100, 459, 500
Bse21I CCTNAGG 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 449, 469
BseLI CCNNNNNNNGG 5 cut(s) 58, 79, 100, 459, 500
BseMII CTCAG 2 cut(s) 360, 501
BseSI GKGCMC 1 cut(s) 475
BseXI GCAGC 1 cut(s) 298
BshFI GGCC 1 cut(s) 367
BshNI GGYRCC 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 135
BsiSI CCGG 2 cut(s) 59, 330
BslI CCNNNNNNNGG 5 cut(s) 58, 79, 100, 459, 500
BsmAI GTCTC 2 cut(s) 220, 450
BsnI GGCC 1 cut(s) 367
Bsp1286I GDGCHC 3 cut(s) 135, 143, 475
Bsp13I TCCGGA 1 cut(s) 329
Bsp143I GATC 1 cut(s) 347
BspACI CCGC 1 cut(s) 204
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 2 cut(s) 361, 500
BspEI TCCGGA 1 cut(s) 329
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 472
BspQI GCTCTTC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 148
BstDEI CTNAG 5 cut(s) 95, 236, 369, 383, 487
BstF5I GGATG 2 cut(s) 449, 469
BstH2I RGCGCY 1 cut(s) 544
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 1 cut(s) 350
BstMAI GTCTC 2 cut(s) 220, 450
BstMBI GATC 1 cut(s) 347
BstMWI GCNNNNNNNGC 2 cut(s) 130, 286
BstSLI GKGCMC 1 cut(s) 475
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 449, 469
CciI TCATGA 1 cut(s) 255
CfoI GCGC 1 cut(s) 543
Cfr13I GGNCC 2 cut(s) 70, 491
Csp6I GTAC 1 cut(s) 416
CviAII CATG 4 cut(s) 106, 156, 256, 476
CviJI RGCY 6 cut(s) 58, 133, 141, 211, 289, 367
CviKI_1 RGCY 6 cut(s) 58, 133, 141, 211, 289, 367
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 5 cut(s) 95, 236, 369, 383, 487
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
EciI GGCGGA 1 cut(s) 219
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 367
Eco24I GRGCYC 2 cut(s) 135, 143
Eco47I GGWCC 2 cut(s) 70, 491
Eco53kI GAGCTC 1 cut(s) 133
Eco81I CCTNAGG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 135, 143
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 4 cut(s) 109, 159, 259, 479
FaiI YATR 8 cut(s) 6, 107, 150, 152, 157, 242, 257, 477
FatI CATG 4 cut(s) 105, 155, 255, 475
FauNDI CATATG 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 2 cut(s) 436, 476
FriOI GRGCYC 2 cut(s) 135, 143
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 542
GluI GCNGC 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 544
HaeIII GGCC 1 cut(s) 367
HapII CCGG 2 cut(s) 59, 330
HhaI GCGC 1 cut(s) 543
Hin1II CATG 4 cut(s) 109, 159, 259, 479
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HinfI GANTC 2 cut(s) 83, 304
HpaII CCGG 2 cut(s) 59, 330
Hpy166II GTNNAC 2 cut(s) 416, 481
Hpy188III TCNNGA 3 cut(s) 256, 330, 453
Hpy8I GTNNAC 2 cut(s) 416, 481
HpyAV CCTTC 7 cut(s) 154, 163, 181, 357, 389, 493, 520
HpyCH4IV ACGT 2 cut(s) 313, 439
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 286
HpyF3I CTNAG 5 cut(s) 95, 236, 369, 383, 487
HpySE526I ACGT 2 cut(s) 313, 439
Hsp92II CATG 4 cut(s) 109, 159, 259, 479
HspAI GCGC 1 cut(s) 541
Kpn2I TCCGGA 1 cut(s) 329
Kzo9I GATC 1 cut(s) 347
LguI GCTCTTC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 277
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 454
MaeI CTAG 1 cut(s) 200
MaeII ACGT 2 cut(s) 313, 439
MaeIII GTNAC 2 cut(s) 398, 435
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 4 cut(s) 58, 135, 271, 535
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 3 cut(s) 135, 143, 475
MluCI AATT 1 cut(s) 77
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 2 cut(s) 156, 467
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 329
MseI TTAA 1 cut(s) 547
MspI CCGG 2 cut(s) 59, 330
MwoI GCNNNNNNNGC 2 cut(s) 130, 286
NdeI CATATG 1 cut(s) 150
NdeII GATC 1 cut(s) 347
NlaIII CATG 4 cut(s) 109, 159, 259, 479
NlaIV GGNNCC 1 cut(s) 472
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 255
PceI AGGCCT 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 1 cut(s) 288
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 2 cut(s) 70, 491
PsuI RGATCY 1 cut(s) 347
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 547
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 1 cut(s) 347
Sau96I GGNCC 2 cut(s) 70, 491
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 3 cut(s) 135, 143, 475
SfaNI GCATC 1 cut(s) 454
SinI GGWCC 2 cut(s) 70, 491
Sse9I AATT 1 cut(s) 77
SseBI AGGCCT 1 cut(s) 367
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 135
StuI AGGCCT 1 cut(s) 367
StyI CCWWGG 1 cut(s) 66
TaiI ACGT 2 cut(s) 316, 442
TasI AATT 1 cut(s) 77
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 1 cut(s) 304
Tru1I TTAA 1 cut(s) 547
Tru9I TTAA 1 cut(s) 547
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 79
VpaK11BI GGWCC 2 cut(s) 70, 491
XspI CTAG 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.