Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007194

Physical Location & Seq

Genomic Coordinates Reverse (-)

725124 .. 727712

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00840.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAATATGAAATGGGTTGCCCAGTTGAAATACCTAGCCCACCAAGCCCACCTAGCAGCCCATCGTCGAGTCCCGAACGCGAGCACGCAGCCTCCTCATTCTTCAGCACTAAGTCCTCCCTGTAGCTCGAGCCGCCGCTCCACCGCCATTCTGCAGCACTCCTCCACCCAGCGCCGCCCTCTGTTACTAGGGCTTTTGCAATACTTTGTTCCCAATTTGTTCCAACAAATAGGAAAAATGCAGAAGAATAAGGGAAGACAAAGAGGAGGGGGACCATTTACGAGACGAACGGATAACAAGGAAGAAAACTCAGACACCCACTTCCAAAAAATGGACTTGAGGAACATTGCTAAAGAGATTGAGCTTTTGGGTACTTCTAATATGACTTGGAAGGAGAGAAAGGAGTTGGAAAATAGGAGGGTGGTTTCTCTAGGCGGAAAGCCTCAAAAGAACCGGCGACTACCTCTAAGTGTAGCAAAGCTGGTCATGAAGAATCAAAAGAAAAGGGAGCAAAAACTGCAAGAACAGAACATGGTCCTTGGACGTTTTGGTGGGAATTCAAGTGGCAGTTCTAAGAGATCCACAGAGAGGAAGAGGCCCGAGAACAGGGGTTTGAAAGGAAGCGAAGGACACTTTAAAAACGGTGTACTTGATGTGAAGCATTTGCTACGTCCTACTTCATCTGGAGACACATATGCTGGTCCGAGTATGTTCAGAGGGAAAACTAAGGGGAAGCGAAAGAACAACACAGGTAAGAAGATCGGTGGTATGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4602

Protein Analysis

259

Amino Acids

29.13

Weight (kDa)

11.24

Isoelectric Point (pI)

59.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44820 AT2G44820
fragaria_vesca	FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170
malus_domestica	MD12G1010900.v1.1
prunus_persica	Prupe.4G268800_v2.0.a1 Prupe.4G268800_v2.0.a1 Prupe.7G012800_v2.0.a1
pyrus_communis	pycom12g00840
rosa_chinensis	RchiOBHm_Chr5g0046151
rosa_laevigata	RLG00000034379
rosa_multiflora	Rmu_sc0001035.1_g000060 Rmu_sc0001035.1_g000070 Rmu_sc0007758.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035420
rosa_rugosa	Rorug05G0225000 Rorug05G0225100
rosa_samantha	Rh5AG306300 Rh5BG314400 Rh5CG340900 Rh5DG324700
rosa_wichuraiana	Rw5G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccBSI	CCGCTC	1 cut(s)	138
AccII	CGCG	1 cut(s)	80
AciI	CCGC	5 cut(s)	133, 136, 144, 175, 435
AclWI	GGATC	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	373, 648
AfiI	CCNNNNNNNGG	3 cut(s)	331, 588, 606
AgsI	TTSAA	3 cut(s)	28, 561, 616
AluBI	AGCT	3 cut(s)	126, 364, 481
AluI	AGCT	3 cut(s)	126, 364, 481
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	2 cut(s)	277, 681
AlwI	GGATC	1 cut(s)	573
Ama87I	CYCGRG	2 cut(s)	127, 599
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	3 cut(s)	56, 88, 154
ApoI	RAATTY	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	4 cut(s)	272, 535, 597, 701
AvaI	CYCGRG	2 cut(s)	127, 599
AvaII	GGWCC	3 cut(s)	272, 535, 701
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	68, 100, 166
BccI	CCATC	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	277, 681
BfaI	CTAG	5 cut(s)	35, 53, 188, 431, 775
BfmI	CTRYAG	2 cut(s)	121, 152
BfoI	RGCGCY	1 cut(s)	175
BisI	GCNGC	6 cut(s)	57, 89, 133, 136, 155, 175
BlsI	GCNGC	6 cut(s)	58, 90, 134, 137, 156, 176
Bme18I	GGWCC	3 cut(s)	272, 535, 701
BmeT110I	CYCGRG	2 cut(s)	127, 599
BmgT120I	GGNCC	4 cut(s)	272, 535, 597, 701
BmiI	GGNNCC	1 cut(s)	273
BmrI	ACTGGG	1 cut(s)	16
BmuI	ACTGGG	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	705
BpuEI	CTTGAG	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 588, 606
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	538
BseLI	CCNNNNNNNGG	3 cut(s)	331, 588, 606
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	3 cut(s)	84, 151, 279
BseXI	GCAGC	3 cut(s)	68, 100, 166
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	86
BsiHKCI	CYCGRG	2 cut(s)	127, 599
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	2 cut(s)	56, 285
BslI	CCNNNNNNNGG	3 cut(s)	331, 588, 606
BsmAI	GTCTC	2 cut(s)	277, 681
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	56, 285
BsnI	GGCC	1 cut(s)	598
BsoBI	CYCGRG	2 cut(s)	127, 599
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	578, 759
BspACI	CCGC	5 cut(s)	133, 136, 144, 175, 435
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	1 cut(s)	323
BspFNI	CGCG	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	573
BsrBI	CCGCTC	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	2 cut(s)	578, 759
BssT1I	CCWWGG	1 cut(s)	538
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	1 cut(s)	587
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	82, 86
BstDEI	CTNAG	5 cut(s)	110, 310, 467, 573, 726
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	2 cut(s)	581, 762
BstMAI	GTCTC	2 cut(s)	277, 681
BstMBI	GATC	2 cut(s)	578, 759
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 53, 132, 517
BstSFI	CTRYAG	2 cut(s)	121, 152
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	68, 100, 166
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	82, 86
CciI	TCATGA	1 cut(s)	486
CfoI	GCGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	4 cut(s)	272, 535, 597, 701
Csp6I	GTAC	2 cut(s)	372, 647
CviAII	CATG	2 cut(s)	487, 532
CviQI	GTAC	2 cut(s)	372, 647
DdeI	CTNAG	5 cut(s)	110, 310, 467, 573, 726
DpnI	GATC	2 cut(s)	580, 761
DpnII	GATC	2 cut(s)	578, 759
DraI	TTTAAA	1 cut(s)	637
Eam1104I	CTCTTC	1 cut(s)	587
EarI	CTCTTC	1 cut(s)	587
EciI	GGCGGA	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	538
Eco47I	GGWCC	3 cut(s)	272, 535, 701
Eco57I	CTGAAG	1 cut(s)	87
Eco88I	CYCGRG	2 cut(s)	127, 599
EcoRI	GAATTC	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	2 cut(s)	490, 535
FaiI	YATR	8 cut(s)	8, 383, 488, 533, 694, 696, 710, 770
FaqI	GGGAC	2 cut(s)	56, 285
FatI	CATG	2 cut(s)	486, 531
FauNDI	CATATG	1 cut(s)	694
Fnu4HI	GCNGC	6 cut(s)	57, 89, 133, 136, 155, 175
Fsp4HI	GCNGC	6 cut(s)	57, 89, 133, 136, 155, 175
FspBI	CTAG	5 cut(s)	35, 53, 188, 431, 775
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	6 cut(s)	57, 89, 133, 136, 155, 175
GsaI	CCCAGC	1 cut(s)	172
GsuI	CTGGAG	1 cut(s)	705
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	1 cut(s)	454
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	490, 535
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	69, 493
HpaII	CCGG	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	3 cut(s)	313, 705, 716
Hpy188III	TCNNGA	3 cut(s)	73, 487, 684
Hpy8I	GTNNAC	1 cut(s)	647
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	385, 620
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	2 cut(s)	544, 670
HpyCH4V	TGCA	4 cut(s)	154, 199, 241, 520
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 53, 132, 517
HpyF3I	CTNAG	5 cut(s)	110, 310, 467, 573, 726
HpySE526I	ACGT	2 cut(s)	544, 670
Hsp92II	CATG	2 cut(s)	490, 535
HspAI	GCGC	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	578, 759
LmnI	GCTCC	2 cut(s)	143, 508
LpnPI	CCDG	9 cut(s)	35, 133, 182, 467, 467, 592, 669, 684, 735
Lsp1109I	GCAGC	3 cut(s)	68, 100, 166
MaeI	CTAG	5 cut(s)	35, 53, 188, 431, 775
MaeII	ACGT	2 cut(s)	544, 670
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	2 cut(s)	580, 761
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	2 cut(s)	578, 759
MboII	GAAGA	7 cut(s)	93, 256, 267, 314, 502, 604, 769
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	2 cut(s)	214, 556
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	2 cut(s)	247, 387
MseI	TTAA	1 cut(s)	636
MspI	CCGG	1 cut(s)	454
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	44, 53, 132, 517
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	2 cut(s)	578, 759
NlaIII	CATG	2 cut(s)	490, 535
NlaIV	GGNNCC	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	127
PagI	TCATGA	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	493
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	6 cut(s)	58, 90, 134, 137, 156, 176
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	4 cut(s)	272, 535, 597, 701
PspXI	VCTCGAGB	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	578
RsaI	GTAC	2 cut(s)	373, 648
RsaNI	GTAC	2 cut(s)	372, 647
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	6 cut(s)	57, 89, 133, 136, 155, 175
Sau3AI	GATC	2 cut(s)	578, 759
Sau96I	GGNCC	4 cut(s)	272, 535, 597, 701
SchI	GAGTC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	9 cut(s)	36, 54, 128, 366, 466, 483, 547, 673, 754
SfcI	CTRYAG	2 cut(s)	121, 152
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	3 cut(s)	272, 535, 701
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	127, 337
SmoI	CTYRAG	2 cut(s)	127, 337
Sse9I	AATT	2 cut(s)	214, 556
SsiI	CCGC	5 cut(s)	133, 136, 144, 175, 435
SspMI	CTAG	5 cut(s)	35, 53, 188, 431, 775
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	2 cut(s)	547, 673
TaqI	TCGA	2 cut(s)	67, 128
TasI	AATT	2 cut(s)	214, 556
TatI	WGTACW	1 cut(s)	646
TauI	GCSGC	3 cut(s)	135, 138, 177
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TseI	GCWGC	3 cut(s)	56, 88, 154
TspDTI	ATGAA	4 cut(s)	17, 23, 503, 669
TspGWI	ACGGA	1 cut(s)	305
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	3 cut(s)	272, 535, 701
XapI	RAATTY	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	5 cut(s)	35, 53, 188, 431, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.