Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007194

Physical Location & Seq

Genomic Coordinates Reverse (-)

23359098 .. 23360556

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0225100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGATCCAGGACCTCAGGATTGGGCATCTTTACCTAAGGACCTTCTTTATTCAGTTCTTGAGAGATTAGTGTTACCAGGAGACTACTTGCGATTCAGCATTGTTTGTACGTCATGGTATTCTGCAGCAAAGGATAATAAAGTTATTCGTGCAAGGATGACAGCTCCAATGCTCTTGATTTATACAGGCAAAAAAGATTATTGGAAATTATACGACATCATGGTTAACAGGTTCCTGGATTTGCAAGTGAGAGTTCCCAATAAGCGGCTTTGTGGGTCTTCAAAAGATTGGTTAATATTTGTGGATAAAAATGTCGCGGATAAGACTTTTGGAGTGACCCTAATTAATCCATTCTTCAGGGTCAGAGGAAGAAGAGAGAAAGAAAACTCCATCATTCGCCTTCCTCCACTAACGCCTCCAGGTTGGGAAAAGTGGTTCAGACGATGCGAGTATTATGTCTACAAGGCTACAATGTCAGGTGACCCAATACAAGATCCAAACAATTGCATAGTTTTTGTTATATATATGGAACAGTCTCTCTTGGCATTTATTAAACCGGGTAAAGGCACAGCATGGACGTATGTTGATGCAAGTGTAGATAGTACTGTTCGAGGGTGCCGCTTGGTTGAAGAAGTTACCTGCCTTGAAGGTAAATTTTATGCTGTTAACCATTGGAGTGAACTCATATCTTTTTATGTTACTGCTGAGTCATACTCAAATGTAAAATTGGTTGTACCGGCTGGATTCAAACCAAATTGCATAATCAAGAGATATCTTGTGGAAACAAAAGATAAAGAACTGTTAATGGTTCAAAGATACATAGAGTTTGACGATGAAAAATACATACGCGTGACAAAGAAATTTAGATTTTTCAAATTGAATTTCAATTTGTGCAAGTGGATTGAAGAAACCAGCTTAGGTGATTTTGCGCTCTTTTTGGGAGATAATACTTCAGAAGCTATGATGCCTTCAAAATTTTCAAGTTGTCGACCAAATCACATATACTTCAACCATGATCGTGATTTGTTTAGCCGTTACGGACCTCATGATTATGGTGTTTATAACATCAAAGAGGAAAGTTTTTCACAGCCTTACACCAAACAGGCTAAAAACCTGGTGAAGAAGAGCAATCGACTGCCAATTTGGGTTGTTCCAAGTTTTCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4602

Protein Analysis

389

Amino Acids

45.58

Weight (kDa)

9.15

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	8 - 47	1.5e-06	F-box-like
Beta-prop_KIB1-4	PF03478	83 - 355	2.3e-42	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44820 AT2G44820
fragaria_vesca	FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170
malus_domestica	MD12G1010900.v1.1
prunus_persica	Prupe.4G268800_v2.0.a1 Prupe.4G268800_v2.0.a1 Prupe.7G012800_v2.0.a1
pyrus_communis	pycom12g00840
rosa_chinensis	RchiOBHm_Chr5g0046151
rosa_laevigata	RLG00000034379
rosa_multiflora	Rmu_sc0001035.1_g000060 Rmu_sc0001035.1_g000070 Rmu_sc0007758.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035420
rosa_rugosa	Rorug05G0225000 Rorug05G0225100
rosa_samantha	Rh5AG306300 Rh5BG314400 Rh5CG340900 Rh5DG324700
rosa_wichuraiana	Rw5G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1062
Acc36I	ACCTGC	1 cut(s)	647
AccB1I	GGYRCC	1 cut(s)	615
AccI	GTMKAC	2 cut(s)	459, 988
AccII	CGCG	2 cut(s)	317, 849
AciI	CCGC	3 cut(s)	265, 317, 619
AclWI	GGATC	2 cut(s)	12, 488
AcsI	RAATTY	4 cut(s)	653, 860, 880, 974
AcuI	CTGAAG	2 cut(s)	340, 936
AfaI	GTAC	3 cut(s)	109, 604, 735
AfiI	CCNNNNNNNGG	2 cut(s)	264, 563
AflIII	ACRYGT	1 cut(s)	847
AjnI	CCWGG	5 cut(s)	7, 76, 234, 418, 1113
AloI	GAACNNNNNNTCC	2 cut(s)	419, 451
AluBI	AGCT	3 cut(s)	164, 915, 959
AluI	AGCT	3 cut(s)	164, 915, 959
Alw26I	GTCTC	2 cut(s)	75, 540
AlwI	GGATC	2 cut(s)	12, 488
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	4 cut(s)	653, 860, 880, 974
ArsI	GACNNNNNNTTYG	2 cut(s)	1125, 1157
AseI	ATTAAT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	931
AspS9I	GGNCC	3 cut(s)	11, 40, 1040
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	3 cut(s)	491, 932, 1129
AvaII	GGWCC	3 cut(s)	11, 40, 1040
AxyI	CCTNAGG	2 cut(s)	15, 36
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	1017
BciT130I	CCWGG	5 cut(s)	9, 78, 236, 420, 1115
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	2 cut(s)	75, 540
BfmI	CTRYAG	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	647
BisI	GCNGC	3 cut(s)	126, 266, 619
BlsI	GCNGC	3 cut(s)	127, 267, 620
BmcAI	AGTACT	1 cut(s)	604
Bme1390I	CCNGG	6 cut(s)	9, 78, 236, 420, 558, 1115
Bme18I	GGWCC	3 cut(s)	11, 40, 1040
BmgT120I	GGNCC	3 cut(s)	11, 40, 1040
BmiI	GGNNCC	3 cut(s)	6, 233, 617
BmrFI	CCNGG	6 cut(s)	9, 78, 236, 420, 558, 1115
BmsI	GCATC	4 cut(s)	35, 434, 577, 954
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	698, 730
BpmI	CTGGAG	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	916
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 563
Bse118I	RCCGGY	1 cut(s)	736
Bse21I	CCTNAGG	2 cut(s)	15, 36
BseBI	CCWGG	5 cut(s)	9, 78, 236, 420, 1115
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	264, 563
BseMII	CTCAG	2 cut(s)	29, 696
BseXI	GCAGC	1 cut(s)	137
Bsh1236I	CGCG	2 cut(s)	317, 849
BshNI	GGYRCC	1 cut(s)	615
BsiSI	CCGG	2 cut(s)	557, 737
BslI	CCNNNNNNNGG	2 cut(s)	264, 563
BsmAI	GTCTC	2 cut(s)	75, 540
Bsp143I	GATC	3 cut(s)	4, 493, 1015
BspACI	CCGC	3 cut(s)	265, 317, 619
BspCNI	CTCAG	2 cut(s)	28, 697
BspFNI	CGCG	2 cut(s)	317, 849
BspHI	TCATGA	1 cut(s)	1045
BspLI	GGNNCC	3 cut(s)	6, 233, 617
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	2 cut(s)	12, 488
BspQI	GCTCTTC	1 cut(s)	1118
BspT107I	GGYRCC	1 cut(s)	615
BsrFI	RCCGGY	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	736
BssMI	GATC	3 cut(s)	4, 493, 1015
Bst2UI	CCWGG	5 cut(s)	9, 78, 236, 420, 1115
Bst4CI	ACNGT	3 cut(s)	534, 607, 801
Bst6I	CTCTTC	2 cut(s)	367, 1118
BstDEI	CTNAG	4 cut(s)	15, 36, 705, 916
BstEII	GGTNACC	1 cut(s)	479
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	317, 849
BstHHI	GCGC	1 cut(s)	931
BstKTI	GATC	3 cut(s)	7, 496, 1018
BstMAI	GTCTC	2 cut(s)	75, 540
BstMBI	GATC	3 cut(s)	4, 493, 1015
BstNI	CCWGG	5 cut(s)	9, 78, 236, 420, 1115
BstPI	GGTNACC	1 cut(s)	479
BstSCI	CCNGG	6 cut(s)	7, 76, 234, 418, 556, 1113
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	2 cut(s)	317, 849
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	2 cut(s)	4, 493
BstYI	RGATCY	2 cut(s)	4, 493
Bsu36I	CCTNAGG	2 cut(s)	15, 36
BtsCI	GGATG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	647
CciI	TCATGA	1 cut(s)	1045
CfoI	GCGC	1 cut(s)	931
Cfr10I	RCCGGY	1 cut(s)	736
Cfr13I	GGNCC	3 cut(s)	11, 40, 1040
CsiI	ACCWGGT	1 cut(s)	1113
Csp6I	GTAC	3 cut(s)	108, 603, 734
CviAII	CATG	5 cut(s)	114, 220, 573, 1013, 1046
CviJI	RGCY	9 cut(s)	164, 268, 467, 740, 915, 959, 1032, 1090, 1106
CviKI_1	RGCY	9 cut(s)	164, 268, 467, 740, 915, 959, 1032, 1090, 1106
CviQI	GTAC	3 cut(s)	108, 603, 734
DdeI	CTNAG	4 cut(s)	15, 36, 705, 916
DpnI	GATC	3 cut(s)	6, 495, 1017
DpnII	GATC	3 cut(s)	4, 493, 1015
Eam1104I	CTCTTC	2 cut(s)	367, 1118
EarI	CTCTTC	2 cut(s)	367, 1118
Eco32I	GATATC	1 cut(s)	773
Eco47I	GGWCC	3 cut(s)	11, 40, 1040
Eco57I	CTGAAG	2 cut(s)	340, 936
Eco81I	CCTNAGG	2 cut(s)	15, 36
Eco91I	GGTNACC	1 cut(s)	479
EcoO109I	RGGNCCY	2 cut(s)	11, 40
EcoO65I	GGTNACC	1 cut(s)	479
EcoRII	CCWGG	5 cut(s)	7, 76, 234, 418, 1113
EcoRV	GATATC	1 cut(s)	773
FaeI	CATG	5 cut(s)	117, 223, 576, 1016, 1049
FatI	CATG	5 cut(s)	113, 219, 572, 1012, 1045
FblI	GTMKAC	2 cut(s)	459, 988
Fnu4HI	GCNGC	3 cut(s)	126, 266, 619
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	3 cut(s)	126, 266, 619
GlaI	GCGC	1 cut(s)	930
GluI	GCNGC	3 cut(s)	126, 266, 619
GsuI	CTGGAG	1 cut(s)	402
HapII	CCGG	2 cut(s)	557, 737
HhaI	GCGC	1 cut(s)	931
Hin1II	CATG	5 cut(s)	117, 223, 576, 1016, 1049
Hin6I	GCGC	1 cut(s)	929
HinP1I	GCGC	1 cut(s)	929
HincII	GTYRAC	3 cut(s)	226, 667, 989
HindII	GTYRAC	3 cut(s)	226, 667, 989
HinfI	GANTC	3 cut(s)	93, 707, 744
HpaI	GTTAAC	2 cut(s)	226, 667
HpaII	CCGG	2 cut(s)	557, 737
HphI	GGTGA	3 cut(s)	491, 932, 1129
Hpy166II	GTNNAC	5 cut(s)	226, 460, 667, 680, 989
Hpy188I	TCNGA	3 cut(s)	365, 440, 955
Hpy188III	TCNNGA	6 cut(s)	17, 59, 175, 766, 1019, 1046
Hpy8I	GTNNAC	5 cut(s)	226, 460, 667, 680, 989
HpyAV	CCTTC	4 cut(s)	53, 410, 641, 978
HpyCH4III	ACNGT	3 cut(s)	534, 607, 801
HpyCH4IV	ACGT	2 cut(s)	110, 578
HpyCH4V	TGCA	7 cut(s)	125, 152, 244, 507, 590, 759, 894
HpyF3I	CTNAG	4 cut(s)	15, 36, 705, 916
HpySE526I	ACGT	2 cut(s)	110, 578
Hsp92II	CATG	5 cut(s)	117, 223, 576, 1016, 1049
HspAI	GCGC	1 cut(s)	929
KspAI	GTTAAC	2 cut(s)	226, 667
Kzo9I	GATC	3 cut(s)	4, 493, 1015
LguI	GCTCTTC	1 cut(s)	1118
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	4 cut(s)	35, 434, 577, 954
MabI	ACCWGGT	1 cut(s)	1113
MaeII	ACGT	2 cut(s)	110, 578
MaeIII	GTNAC	7 cut(s)	72, 334, 479, 634, 697, 850, 1034
MalI	GATC	3 cut(s)	6, 495, 1017
MboI	GATC	3 cut(s)	4, 493, 1015
MboII	GAAGA	8 cut(s)	270, 346, 381, 384, 641, 917, 1132, 1135
MfeI	CAATTG	1 cut(s)	502
MflI	RGATCY	2 cut(s)	4, 493
MluI	ACGCGT	1 cut(s)	847
MlyI	GAGTC	1 cut(s)	716
MnlI	CCTC	7 cut(s)	24, 359, 414, 426, 605, 1053, 1066
MseI	TTAA	6 cut(s)	225, 293, 345, 552, 666, 803
MslI	CAYNNNNRTG	4 cut(s)	675, 848, 1017, 1050
MspI	CCGG	2 cut(s)	557, 737
MspR9I	CCNGG	6 cut(s)	9, 78, 236, 420, 558, 1115
MunI	CAATTG	1 cut(s)	502
MvaI	CCWGG	5 cut(s)	9, 78, 236, 420, 1115
MvnI	CGCG	2 cut(s)	317, 849
NciI	CCSGG	1 cut(s)	558
NdeII	GATC	3 cut(s)	4, 493, 1015
NlaIII	CATG	5 cut(s)	117, 223, 576, 1016, 1049
NlaIV	GGNNCC	3 cut(s)	6, 233, 617
NmuCI	GTSAC	3 cut(s)	334, 479, 850
PagI	TCATGA	1 cut(s)	1045
PciSI	GCTCTTC	1 cut(s)	1118
PfeI	GAWTC	2 cut(s)	93, 744
PfoI	TCCNGGA	2 cut(s)	7, 234
PkrI	GCNGC	3 cut(s)	127, 267, 620
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PpuMI	RGGWCCY	2 cut(s)	11, 40
PshBI	ATTAAT	1 cut(s)	345
PsiI	TTATAA	1 cut(s)	1062
Psp5II	RGGWCCY	2 cut(s)	11, 40
Psp6I	CCWGG	5 cut(s)	7, 76, 234, 418, 1113
PspEI	GGTNACC	1 cut(s)	479
PspGI	CCWGG	5 cut(s)	7, 76, 234, 418, 1113
PspN4I	GGNNCC	3 cut(s)	6, 233, 617
PspPI	GGNCC	3 cut(s)	11, 40, 1040
PspPPI	RGGWCCY	2 cut(s)	11, 40
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	4, 493
RsaI	GTAC	3 cut(s)	109, 604, 735
RsaNI	GTAC	3 cut(s)	108, 603, 734
RseI	CAYNNNNRTG	4 cut(s)	675, 848, 1017, 1050
SalI	GTCGAC	1 cut(s)	987
SapI	GCTCTTC	1 cut(s)	1118
SaqAI	TTAA	6 cut(s)	225, 293, 345, 552, 666, 803
SatI	GCNGC	3 cut(s)	126, 266, 619
Sau3AI	GATC	3 cut(s)	4, 493, 1015
Sau96I	GGNCC	3 cut(s)	11, 40, 1040
ScaI	AGTACT	1 cut(s)	604
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	6 cut(s)	9, 78, 236, 420, 558, 1115
SexAI	ACCWGGT	1 cut(s)	1113
SfaNI	GCATC	4 cut(s)	35, 434, 577, 954
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	3 cut(s)	11, 40, 1040
SmiMI	CAYNNNNRTG	4 cut(s)	675, 848, 1017, 1050
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SsiI	CCGC	3 cut(s)	265, 317, 619
SspI	AATATT	1 cut(s)	297
StyD4I	CCNGG	6 cut(s)	7, 76, 234, 418, 556, 1113
TaaI	ACNGT	3 cut(s)	534, 607, 801
TaiI	ACGT	2 cut(s)	113, 581
TaqI	TCGA	3 cut(s)	610, 988, 1132
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	2 cut(s)	268, 621
TfiI	GAWTC	2 cut(s)	93, 744
Tru1I	TTAA	6 cut(s)	225, 293, 345, 552, 666, 803
Tru9I	TTAA	6 cut(s)	225, 293, 345, 552, 666, 803
TseFI	GTSAC	3 cut(s)	334, 479, 850
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	3 cut(s)	334, 479, 850
TspDTI	ATGAA	2 cut(s)	849, 1151
TspGWI	ACGGA	1 cut(s)	1053
VpaK11BI	GGWCC	3 cut(s)	11, 40, 1040
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	4 cut(s)	653, 860, 880, 974
XmiI	GTMKAC	2 cut(s)	459, 988
ZrmI	AGTACT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.