Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001035.1

Orthogroup ID

OG0007194

Physical Location & Seq

Genomic Coordinates Reverse (-)

336675 .. 340289

Gene Structure 3615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001035.1_g000070.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgcataagaacaagggaggcgacagagggcgacaaatgggtaggaagaaccagaagccggaaaccaaggaccaagaattggactccaccgacctaagaatggacatgagggagatttccaagcgtattgagctcttgggctcttctcatatgacatggaaggagaggaaggagttggagaataagaaggtggttgctctaggcggaaagcctccaaagaagcagagactacctctaagtatagcaagagtggtcatgaagaaacaaaaggacagggagcaaaagcagctacaagagaatgtgattcttggacgttttggagggaaatccagaggtggttcaaaaagatctgtggagaagcgaaggcctgaggacagggttctaagagcaagtgaaggttacttcaaaaatggtgtacttgatgtgaagcatttgttacgtccaacatcatacagagacagggaagctggtgcccatgtgaacttctcaggtccaaagaagggaggtggaaaaaacaaagggaagaagggtggtaagaagcgccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4602

Protein Analysis

182

Amino Acids

20.79

Weight (kDa)

10.73

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44820 AT2G44820
fragaria_vesca	FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170
malus_domestica	MD12G1010900.v1.1
prunus_persica	Prupe.4G268800_v2.0.a1 Prupe.4G268800_v2.0.a1 Prupe.7G012800_v2.0.a1
pyrus_communis	pycom12g00840
rosa_chinensis	RchiOBHm_Chr5g0046151
rosa_laevigata	RLG00000034379
rosa_multiflora	Rmu_sc0001035.1_g000060 Rmu_sc0001035.1_g000070 Rmu_sc0007758.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035420
rosa_rugosa	Rorug05G0225000 Rorug05G0225100
rosa_samantha	Rh5AG306300 Rh5BG314400 Rh5CG340900 Rh5DG324700
rosa_wichuraiana	Rw5G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccB7I	CCANNNNNTGG	1 cut(s)	79
AciI	CCGC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	4 cut(s)	58, 79, 100, 500
AgsI	TTSAA	2 cut(s)	342, 406
AluBI	AGCT	3 cut(s)	133, 289, 467
AluI	AGCT	3 cut(s)	133, 289, 467
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	220, 450
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	543
AspS9I	GGNCC	2 cut(s)	70, 491
AvaII	GGWCC	2 cut(s)	70, 491
AxyI	CCTNAGG	1 cut(s)	369
BaeGI	GKGCMC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	2 cut(s)	135, 143
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	220, 450
BfaI	CTAG	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	544
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	70, 491
BmgT120I	GGNCC	2 cut(s)	70, 491
BmiI	GGNNCC	1 cut(s)	472
BplI	GAGNNNNNCTC	2 cut(s)	217, 249
BsaJI	CCNNGG	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 79, 100, 500
Bse21I	CCTNAGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	58, 79, 100, 500
BseMII	CTCAG	2 cut(s)	360, 501
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	367
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	4 cut(s)	58, 79, 100, 500
BsmAI	GTCTC	2 cut(s)	220, 450
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	3 cut(s)	135, 143, 475
Bsp143I	GATC	1 cut(s)	347
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	2 cut(s)	361, 500
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	472
BspQI	GCTCTTC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	148
BstDEI	CTNAG	5 cut(s)	95, 236, 369, 383, 487
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	543
BstKTI	GATC	1 cut(s)	350
BstMAI	GTCTC	2 cut(s)	220, 450
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 286
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	1 cut(s)	367
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	543
Cfr13I	GGNCC	2 cut(s)	70, 491
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	4 cut(s)	106, 156, 256, 476
CviJI	RGCY	7 cut(s)	58, 133, 141, 211, 289, 367, 467
CviKI_1	RGCY	7 cut(s)	58, 133, 141, 211, 289, 367, 467
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	5 cut(s)	95, 236, 369, 383, 487
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
EciI	GGCGGA	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	367
Eco24I	GRGCYC	2 cut(s)	135, 143
Eco47I	GGWCC	2 cut(s)	70, 491
Eco53kI	GAGCTC	1 cut(s)	133
Eco81I	CCTNAGG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	66
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	135, 143
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	109, 159, 259, 479
FaiI	YATR	9 cut(s)	6, 107, 150, 152, 157, 242, 257, 451, 477
FatI	CATG	4 cut(s)	105, 155, 255, 475
FauNDI	CATATG	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	287
FriOI	GRGCYC	2 cut(s)	135, 143
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	542
GluI	GCNGC	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	544
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	1 cut(s)	543
Hin1II	CATG	4 cut(s)	109, 159, 259, 479
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HinfI	GANTC	2 cut(s)	83, 304
HpaII	CCGG	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	416, 481
Hpy188III	TCNNGA	2 cut(s)	256, 330
Hpy8I	GTNNAC	2 cut(s)	416, 481
HpyAV	CCTTC	7 cut(s)	154, 163, 181, 357, 389, 493, 520
HpyCH4IV	ACGT	2 cut(s)	313, 439
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 286
HpyF3I	CTNAG	5 cut(s)	95, 236, 369, 383, 487
HpySE526I	ACGT	2 cut(s)	313, 439
Hsp92II	CATG	4 cut(s)	109, 159, 259, 479
HspAI	GCGC	1 cut(s)	541
Kzo9I	GATC	1 cut(s)	347
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	9 cut(s)	65, 72, 259, 343, 361, 381, 445, 453, 474
Lsp1109I	GCAGC	1 cut(s)	298
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	2 cut(s)	313, 439
MaeIII	GTNAC	2 cut(s)	398, 435
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	4 cut(s)	58, 135, 271, 535
MflI	RGATCY	1 cut(s)	347
MhlI	GDGCHC	3 cut(s)	135, 143, 475
MluCI	AATT	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	156, 467
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	547
MspI	CCGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	130, 286
NdeI	CATATG	1 cut(s)	150
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	4 cut(s)	109, 159, 259, 479
NlaIV	GGNNCC	1 cut(s)	472
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	304
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	472
PspPI	GGNCC	2 cut(s)	70, 491
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	547
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	1 cut(s)	347
Sau96I	GGNCC	2 cut(s)	70, 491
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	3 cut(s)	135, 143, 475
SinI	GGWCC	2 cut(s)	70, 491
Sse9I	AATT	1 cut(s)	77
SseBI	AGGCCT	1 cut(s)	367
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	200
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	367
StyI	CCWWGG	1 cut(s)	66
TaiI	ACGT	2 cut(s)	316, 442
TasI	AATT	1 cut(s)	77
TatI	WGTACW	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	1 cut(s)	547
Tru9I	TTAA	1 cut(s)	547
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	70, 491
XspI	CTAG	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.