Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001035.1

Orthogroup ID

OG0007194

Physical Location & Seq

Genomic Coordinates Reverse (-)

304558 .. 309567

Gene Structure 5010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001035.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atggatggacgccggaccggtctggtcgactcgtctcagcggtacgatgagtatcccgatagtctctgctccgaaatactggcgactgcggcaggaggaagcccgaaaagtttctgggttagcagacgagttttccagttctggctaaatcgcggaaaatccggaggtggttcaaaaagatctgtggagaagcgaaggcctgaggacagggttctaagagcaagtgaaggttacttcaaaaatggtgtacttgatgtgaagcatttgttacgtccaacatcatccagagacagggatgctggtgcccatgtgaacttctcaggtccaaagaagggaggtggaaaaaacaaagggaagaagggtgaaaccaccgccgcccaccttgaagatctcaactccaggagtccagaaccggcggccccacccccagaaccggccggaaaatatccgaaccggcccccggaaatatcgatatcctccctgcccgcccagcagaagctgacacgtcatcatccacgtaggcagcggacccagcgccacgtcagctccataccagtgccacgtcatccccggaccagcgccacgtcagcactgatcaacccaagtcaacgccggttgacggtttccggtcaactttccgggcactattccggtagcccccggcgacttttcaggccattttccggcgactttttcctgtcaaattttccggcgacctatttcgagggcactgcctccgtccaccaccagcctagggctggcacagtccctatccatgacgccatggatggcgtccatcatggtgatggcgtcccaggtgatattgtaatcacccacttgcttcacatagcatttaggacgctcaggcctaaccaaaatactcaatggttgcttctaaggcctctcgctcgttttactaagcctgttccttcgggaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4602

Protein Analysis

313

Amino Acids

34.58

Weight (kDa)

10.89

Isoelectric Point (pI)

61.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44820 AT2G44820
fragaria_vesca	FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170
malus_domestica	MD12G1010900.v1.1
prunus_persica	Prupe.4G268800_v2.0.a1 Prupe.4G268800_v2.0.a1 Prupe.7G012800_v2.0.a1
pyrus_communis	pycom12g00840
rosa_chinensis	RchiOBHm_Chr5g0046151
rosa_laevigata	RLG00000034379
rosa_multiflora	Rmu_sc0001035.1_g000060 Rmu_sc0001035.1_g000070 Rmu_sc0007758.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035420
rosa_rugosa	Rorug05G0225000 Rorug05G0225100
rosa_samantha	Rh5AG306300 Rh5BG314400 Rh5CG340900 Rh5DG324700
rosa_wichuraiana	Rw5G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	8 cut(s)	40, 89, 153, 372, 375, 416, 486, 526
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	1 cut(s)	703
AcyI	GRCGYC	4 cut(s)	10, 780, 792, 810
AfaI	GTAC	2 cut(s)	44, 249
AfiI	CCNNNNNNNGG	8 cut(s)	291, 332, 433, 460, 619, 683, 754, 758
AflIII	ACRYGT	1 cut(s)	503
AgeI	ACCGGT	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	174, 238, 386
AjiI	CACGTC	4 cut(s)	506, 541, 563, 585
AjnI	CCWGG	2 cut(s)	398, 814
AluBI	AGCT	2 cut(s)	499, 546
AluI	AGCT	2 cut(s)	499, 546
Alw26I	GTCTC	3 cut(s)	39, 68, 282
AlwNI	CAGNNNCTG	1 cut(s)	499
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	7 cut(s)	197, 417, 435, 455, 674, 866, 899
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	1 cut(s)	703
AsiGI	ACCGGT	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	110
AspA2I	CCTAGG	1 cut(s)	752
AspLEI	GCGC	2 cut(s)	537, 581
AspS9I	GGNCC	6 cut(s)	15, 323, 418, 456, 528, 573
AsuC2I	CCSGG	4 cut(s)	461, 571, 640, 661
AsuHPI	GGTGA	4 cut(s)	374, 815, 823, 830
AvaII	GGWCC	4 cut(s)	15, 323, 528, 573
AvrII	CCTAGG	1 cut(s)	752
AxyI	CCTNAGG	1 cut(s)	201
BaeGI	GKGCMC	3 cut(s)	307, 645, 731
BanI	GGYRCC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	3 cut(s)	782, 800, 804
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BciT130I	CCWGG	2 cut(s)	400, 816
BciVI	GTATCC	1 cut(s)	63
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	4 cut(s)	461, 571, 640, 661
BcoDI	GTCTC	3 cut(s)	39, 68, 282
BfaI	CTAG	1 cut(s)	753
BfoI	RGCGCY	2 cut(s)	538, 582
BfuI	GTATCC	1 cut(s)	63
BglII	AGATCT	2 cut(s)	179, 388
BisI	GCNGC	4 cut(s)	90, 375, 417, 524
BlnI	CCTAGG	1 cut(s)	752
BlsI	GCNGC	4 cut(s)	91, 376, 418, 525
Bme1390I	CCNGG	6 cut(s)	400, 461, 571, 640, 661, 816
Bme18I	GGWCC	4 cut(s)	15, 323, 528, 573
BmgBI	CACGTC	4 cut(s)	506, 541, 563, 585
BmgT120I	GGNCC	6 cut(s)	15, 323, 418, 456, 528, 573
BmiI	GGNNCC	4 cut(s)	304, 420, 458, 530
BmrFI	CCNGG	6 cut(s)	400, 461, 571, 640, 661, 816
BmsI	GCATC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	382
Bpu10I	CCTNAGC	1 cut(s)	863
BpuMI	CCSGG	4 cut(s)	461, 571, 640, 661
Bsa29I	ATCGAT	1 cut(s)	470
BsaAI	YACGTR	1 cut(s)	518
BsaBI	GATNNNNATC	1 cut(s)	51
BsaHI	GRCGYC	4 cut(s)	10, 780, 792, 810
BsaJI	CCNNGG	6 cut(s)	459, 569, 659, 752, 783, 814
BsaWI	WCCGGW	4 cut(s)	17, 161, 626, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	8 cut(s)	291, 332, 433, 460, 619, 683, 754, 758
Bse118I	RCCGGY	5 cut(s)	17, 412, 433, 453, 612
Bse1I	ACTGG	3 cut(s)	84, 136, 554
Bse21I	CCTNAGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	400, 816
BseCI	ATCGAT	1 cut(s)	470
BseDI	CCNNGG	6 cut(s)	459, 569, 659, 752, 783, 814
BseGI	GGATG	6 cut(s)	10, 281, 301, 511, 565, 793
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	8 cut(s)	291, 332, 433, 460, 619, 683, 754, 758
BseMII	CTCAG	4 cut(s)	50, 192, 333, 877
BseNI	ACTGG	3 cut(s)	84, 136, 554
BseSI	GKGCMC	3 cut(s)	307, 645, 731
BseX3I	CGGCCG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	535
BseYI	CCCAGC	2 cut(s)	489, 531
Bsh1236I	CGCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	7 cut(s)	199, 419, 437, 457, 676, 868, 901
BshNI	GGYRCC	1 cut(s)	302
BshTI	ACCGGT	1 cut(s)	17
BshVI	ATCGAT	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	438
BslFI	GGGAC	2 cut(s)	752, 797
BslI	CCNNNNNNNGG	8 cut(s)	291, 332, 433, 460, 619, 683, 754, 758
BsmAI	GTCTC	3 cut(s)	39, 68, 282
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	2 cut(s)	752, 797
BsnI	GGCC	7 cut(s)	199, 419, 437, 457, 676, 868, 901
Bsp1286I	GDGCHC	3 cut(s)	307, 645, 731
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	179, 388, 594
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	8 cut(s)	40, 89, 153, 372, 375, 416, 486, 526
BspANI	GGCC	7 cut(s)	199, 419, 437, 457, 676, 868, 901
BspCNI	CTCAG	4 cut(s)	49, 193, 332, 876
BspDI	ATCGAT	1 cut(s)	470
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	4 cut(s)	304, 420, 458, 530
BspT107I	GGYRCC	1 cut(s)	302
BsrFI	RCCGGY	5 cut(s)	17, 412, 433, 453, 612
BsrI	ACTGG	3 cut(s)	84, 136, 554
BssAI	RCCGGY	5 cut(s)	17, 412, 433, 453, 612
BssECI	CCNNGG	6 cut(s)	459, 569, 659, 752, 783, 814
BssMI	GATC	3 cut(s)	179, 388, 594
BssNI	GRCGYC	4 cut(s)	10, 780, 792, 810
BssT1I	CCWWGG	2 cut(s)	752, 783
Bst2UI	CCWGG	2 cut(s)	400, 816
Bst4CI	ACNGT	2 cut(s)	622, 766
BstACI	GRCGYC	4 cut(s)	10, 780, 792, 810
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	486, 760
BstDEI	CTNAG	7 cut(s)	36, 201, 215, 319, 863, 896, 918
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	6 cut(s)	10, 281, 301, 511, 565, 793
BstFNI	CGCG	1 cut(s)	153
BstH2I	RGCGCY	2 cut(s)	538, 582
BstHHI	GCGC	2 cut(s)	537, 581
BstKTI	GATC	3 cut(s)	182, 391, 597
BstMAI	GTCTC	3 cut(s)	39, 68, 282
BstMBI	GATC	3 cut(s)	179, 388, 594
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 490, 532, 543, 587, 898
BstNI	CCWGG	2 cut(s)	400, 816
BstSCI	CCNGG	6 cut(s)	398, 459, 569, 638, 659, 814
BstSLI	GKGCMC	3 cut(s)	307, 645, 731
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	535
BstX2I	RGATCY	2 cut(s)	179, 388
BstYI	RGATCY	2 cut(s)	179, 388
BstZI	CGGCCG	1 cut(s)	435
Bsu15I	ATCGAT	1 cut(s)	470
Bsu36I	CCTNAGG	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	7 cut(s)	199, 419, 437, 457, 676, 868, 901
BsuTUI	ATCGAT	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	783
BtrI	CACGTC	4 cut(s)	506, 541, 563, 585
BtsCI	GGATG	6 cut(s)	10, 281, 301, 511, 565, 793
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	3 cut(s)	561, 590, 729
Cac8I	GCNNGC	2 cut(s)	486, 760
CaiI	CAGNNNCTG	1 cut(s)	499
CfoI	GCGC	2 cut(s)	537, 581
Cfr10I	RCCGGY	5 cut(s)	17, 412, 433, 453, 612
Cfr13I	GGNCC	6 cut(s)	15, 323, 418, 456, 528, 573
ClaI	ATCGAT	1 cut(s)	470
CpoI	CGGWCCG	1 cut(s)	15
CseI	GACGC	5 cut(s)	18, 781, 788, 799, 868
Csp6I	GTAC	2 cut(s)	43, 248
CspAI	ACCGGT	1 cut(s)	17
CspI	CGGWCCG	1 cut(s)	15
CviAII	CATG	4 cut(s)	308, 776, 784, 800
CviQI	GTAC	2 cut(s)	43, 248
DdeI	CTNAG	7 cut(s)	36, 201, 215, 319, 863, 896, 918
DpnI	GATC	3 cut(s)	181, 390, 596
DpnII	GATC	3 cut(s)	179, 388, 594
EaeI	YGGCCR	1 cut(s)	435
EagI	CGGCCG	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	435
Eco130I	CCWWGG	2 cut(s)	752, 783
Eco147I	AGGCCT	3 cut(s)	199, 868, 901
Eco32I	GATATC	1 cut(s)	474
Eco47I	GGWCC	4 cut(s)	15, 323, 528, 573
Eco52I	CGGCCG	1 cut(s)	435
Eco81I	CCTNAGG	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	398, 814
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	752, 783
ErhI	CCWWGG	2 cut(s)	752, 783
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	4 cut(s)	311, 779, 787, 803
FaiI	YATR	6 cut(s)	309, 551, 777, 785, 801, 848
FaqI	GGGAC	2 cut(s)	752, 797
FatI	CATG	4 cut(s)	307, 775, 783, 799
FauI	CCCGC	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	90, 375, 417, 524
FokI	GGATG	6 cut(s)	17, 268, 308, 498, 552, 800
Fsp4HI	GCNGC	4 cut(s)	90, 375, 417, 524
FspBI	CTAG	1 cut(s)	753
GlaI	GCGC	2 cut(s)	536, 580
GluI	GCNGC	4 cut(s)	90, 375, 417, 524
GsaI	CCCAGC	2 cut(s)	493, 535
GsuI	CTGGAG	1 cut(s)	382
HaeII	RGCGCY	2 cut(s)	538, 582
HaeIII	GGCC	7 cut(s)	199, 419, 437, 457, 676, 868, 901
HgaI	GACGC	5 cut(s)	18, 781, 788, 799, 868
HhaI	GCGC	2 cut(s)	537, 581
Hin1I	GRCGYC	4 cut(s)	10, 780, 792, 810
Hin1II	CATG	4 cut(s)	311, 779, 787, 803
Hin6I	GCGC	2 cut(s)	535, 579
HinP1I	GCGC	2 cut(s)	535, 579
HincII	GTYRAC	4 cut(s)	28, 608, 618, 632
HindII	GTYRAC	4 cut(s)	28, 608, 618, 632
HinfI	GANTC	2 cut(s)	29, 403
HphI	GGTGA	4 cut(s)	374, 815, 823, 830
Hpy166II	GTNNAC	7 cut(s)	28, 248, 313, 608, 618, 632, 742
Hpy188I	TCNGA	2 cut(s)	73, 450
Hpy188III	TCNNGA	5 cut(s)	56, 162, 285, 407, 933
Hpy8I	GTNNAC	7 cut(s)	28, 248, 313, 608, 618, 632, 742
HpyAV	CCTTC	5 cut(s)	189, 221, 325, 352, 939
HpyCH4III	ACNGT	2 cut(s)	622, 766
HpyCH4IV	ACGT	6 cut(s)	271, 505, 517, 540, 562, 584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 490, 532, 543, 587, 898
HpyF3I	CTNAG	7 cut(s)	36, 201, 215, 319, 863, 896, 918
HpySE526I	ACGT	6 cut(s)	271, 505, 517, 540, 562, 584
Hsp92I	GRCGYC	4 cut(s)	10, 780, 792, 810
Hsp92II	CATG	4 cut(s)	311, 779, 787, 803
HspAI	GCGC	2 cut(s)	535, 579
Kpn2I	TCCGGA	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	3 cut(s)	179, 388, 594
LmnI	GCTCC	2 cut(s)	74, 551
Lsp1109I	GCAGC	1 cut(s)	535
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	6 cut(s)	271, 505, 517, 540, 562, 584
MaeIII	GTNAC	2 cut(s)	230, 267
MalI	GATC	3 cut(s)	181, 390, 596
MboI	GATC	3 cut(s)	179, 388, 594
MboII	GAAGA	2 cut(s)	367, 398
MflI	RGATCY	2 cut(s)	179, 388
MhlI	GDGCHC	3 cut(s)	307, 645, 731
MluCI	AATT	2 cut(s)	703, 937
MlyI	GAGTC	2 cut(s)	23, 412
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	8 cut(s)	89, 158, 196, 329, 487, 718, 745, 912
MroI	TCCGGA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	110
MslI	CAYNNNNRTG	3 cut(s)	554, 801, 804
MspA1I	CMGCKG	2 cut(s)	40, 526
MspR9I	CCNGG	6 cut(s)	400, 461, 571, 640, 661, 816
MvaI	CCWGG	2 cut(s)	400, 816
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	6 cut(s)	89, 490, 532, 543, 587, 898
NciI	CCSGG	4 cut(s)	461, 571, 640, 661
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	3 cut(s)	179, 388, 594
NlaIII	CATG	4 cut(s)	311, 779, 787, 803
NlaIV	GGNNCC	4 cut(s)	304, 420, 458, 530
PceI	AGGCCT	3 cut(s)	199, 868, 901
PdmI	GAANNNNTTC	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	398
PinAI	ACCGGT	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	91, 376, 418, 525
PleI	GAGTC	2 cut(s)	23, 411
PpsI	GAGTC	2 cut(s)	23, 411
Ppu21I	YACGTR	1 cut(s)	518
Psp6I	CCWGG	2 cut(s)	398, 814
PspFI	CCCAGC	2 cut(s)	489, 531
PspGI	CCWGG	2 cut(s)	398, 814
PspN4I	GGNNCC	4 cut(s)	304, 420, 458, 530
PspPI	GGNCC	6 cut(s)	15, 323, 418, 456, 528, 573
PstNI	CAGNNNCTG	1 cut(s)	499
PsuI	RGATCY	2 cut(s)	179, 388
RsaI	GTAC	2 cut(s)	44, 249
RsaNI	GTAC	2 cut(s)	43, 248
RseI	CAYNNNNRTG	3 cut(s)	554, 801, 804
Rsr2I	CGGWCCG	1 cut(s)	15
RsrII	CGGWCCG	1 cut(s)	15
SalI	GTCGAC	1 cut(s)	26
SatI	GCNGC	4 cut(s)	90, 375, 417, 524
Sau3AI	GATC	3 cut(s)	179, 388, 594
Sau96I	GGNCC	6 cut(s)	15, 323, 418, 456, 528, 573
SchI	GAGTC	2 cut(s)	23, 412
ScrFI	CCNGG	6 cut(s)	400, 461, 571, 640, 661, 816
SduI	GDGCHC	3 cut(s)	307, 645, 731
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	4 cut(s)	15, 323, 528, 573
SmiMI	CAYNNNNRTG	3 cut(s)	554, 801, 804
Sse9I	AATT	2 cut(s)	703, 937
SseBI	AGGCCT	3 cut(s)	199, 868, 901
SsiI	CCGC	8 cut(s)	40, 89, 153, 372, 375, 416, 486, 526
SspMI	CTAG	1 cut(s)	753
StuI	AGGCCT	3 cut(s)	199, 868, 901
StyD4I	CCNGG	6 cut(s)	398, 459, 569, 638, 659, 814
StyI	CCWWGG	2 cut(s)	752, 783
TaaI	ACNGT	2 cut(s)	622, 766
TaiI	ACGT	6 cut(s)	274, 508, 520, 543, 565, 587
TaqI	TCGA	3 cut(s)	27, 470, 723
TasI	AATT	2 cut(s)	703, 937
TatI	WGTACW	1 cut(s)	247
TauI	GCSGC	3 cut(s)	92, 377, 419
TscAI	CASTG	3 cut(s)	561, 597, 736
TseI	GCWGC	1 cut(s)	523
TspGWI	ACGGA	1 cut(s)	727
TspRI	CASTG	3 cut(s)	561, 597, 736
VpaK11BI	GGWCC	4 cut(s)	15, 323, 528, 573
XapI	RAATTY	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	2 cut(s)	755, 803
XmaJI	CCTAGG	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.