Rh5BG314400

Domain of unknown function (DUF4602)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007194
Physical Location & Seq
Forward (+)
41717969 .. 41722321
4353 bp
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UTR
Exon/CDS
Intron
Rh5BG314400.1

Sequence Viewer

Length: 414 bp
ATGACATGGAAGGAGAGGAAGGAGTTGGAGAATAAGAAGGTGGTTGCTCTAGGTGGAAAGCCTCCAAAGAAGCAGAGACTACCTCTAAGTATAGCAAGAGTGGTCATGAAGAAACAAAAGGACAGGGAGCAAAAGCAGCTACAAGAGAATGTGATTCTTGGACGTTTTGGAGGGAAATCCGGAGGTGGTTCAAAAAGATCTGTGGAGAAGCGAAGGCCTGAGGACAGGGTTCTAAGAGCAAGTGAAGGTTACTTCAAAAATGGTGTACTTGATGTGAAGCATTTGTTACGTCCAACATCATCCAGAGACAGGGATGCTGGTGCCCATGTGAACTTCTCAGGTCCAAAGAAGGGAGGTGGAAAGAAGGGAGGTGGAAAAAACAAAGGGAAGAAGGGTGGTAAGAAGCGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4602

Protein Analysis

137

Amino Acids

15.21

Weight (kDa)

11.02

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FSAF1 PF15375 4 - 71 1.2e-09 40S small subunit processome assembly factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccIII TCCGGA 1 cut(s) 179
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 309, 350
AgsI TTSAA 2 cut(s) 192, 256
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 70, 300
Aor13HI TCCGGA 1 cut(s) 179
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 341
AvaII GGWCC 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 70, 300
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 409
BglII AGATCT 1 cut(s) 197
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 322
BmsI GCATC 1 cut(s) 304
BplI GAGNNNNNCTC 2 cut(s) 67, 99
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 350
Bse21I CCTNAGG 1 cut(s) 219
BseAI TCCGGA 1 cut(s) 179
BseGI GGATG 2 cut(s) 299, 319
BseLI CCNNNNNNNGG 2 cut(s) 309, 350
BseMII CTCAG 2 cut(s) 210, 351
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 217
BshNI GGYRCC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 2 cut(s) 309, 350
BsmAI GTCTC 2 cut(s) 70, 300
BsnI GGCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 1 cut(s) 197
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 2 cut(s) 211, 350
BspEI TCCGGA 1 cut(s) 179
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 320
BssMI GATC 1 cut(s) 197
BstDEI CTNAG 4 cut(s) 86, 219, 233, 337
BstF5I GGATG 2 cut(s) 299, 319
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 1 cut(s) 200
BstMAI GTCTC 2 cut(s) 70, 300
BstMBI GATC 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 299, 319
CciI TCATGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 266
CviAII CATG 3 cut(s) 6, 106, 326
CviJI RGCY 3 cut(s) 61, 139, 217
CviKI_1 RGCY 3 cut(s) 61, 139, 217
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 4 cut(s) 86, 219, 233, 337
DpnI GATC 1 cut(s) 199
DpnII GATC 1 cut(s) 197
Eco147I AGGCCT 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 341
Eco81I CCTNAGG 1 cut(s) 219
FaeI CATG 3 cut(s) 9, 109, 329
FaiI YATR 4 cut(s) 7, 92, 107, 327
FatI CATG 3 cut(s) 5, 105, 325
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 2 cut(s) 286, 326
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 50
GlaI GCGC 1 cut(s) 407
GluI GCNGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 1 cut(s) 217
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 408
Hin1II CATG 3 cut(s) 9, 109, 329
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HinfI GANTC 1 cut(s) 154
HpaII CCGG 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 266, 331
Hpy188III TCNNGA 3 cut(s) 106, 180, 303
Hpy8I GTNNAC 2 cut(s) 266, 331
HpyAV CCTTC 8 cut(s) 4, 13, 31, 207, 239, 343, 358, 385
HpyCH4IV ACGT 2 cut(s) 163, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 4 cut(s) 86, 219, 233, 337
HpySE526I ACGT 2 cut(s) 163, 289
Hsp92II CATG 3 cut(s) 9, 109, 329
HspAI GCGC 1 cut(s) 406
Kpn2I TCCGGA 1 cut(s) 179
Kzo9I GATC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 8 cut(s) 109, 193, 211, 231, 295, 303, 316, 324
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 304
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 163, 289
MaeIII GTNAC 2 cut(s) 248, 285
MalI GATC 1 cut(s) 199
MboI GATC 1 cut(s) 197
MboII GAAGA 2 cut(s) 121, 400
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 325
MmeI TCCRAC 2 cut(s) 6, 317
MnlI CCTC 8 cut(s) 9, 72, 93, 164, 176, 214, 347, 362
MroI TCCGGA 1 cut(s) 179
MseI TTAA 1 cut(s) 412
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeII GATC 1 cut(s) 197
NlaIII CATG 3 cut(s) 9, 109, 329
NlaIV GGNNCC 1 cut(s) 322
PagI TCATGA 1 cut(s) 105
PceI AGGCCT 1 cut(s) 217
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 341
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 412
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 1 cut(s) 197
Sau96I GGNCC 1 cut(s) 341
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 1 cut(s) 304
SinI GGWCC 1 cut(s) 341
SseBI AGGCCT 1 cut(s) 217
SspMI CTAG 1 cut(s) 50
StuI AGGCCT 1 cut(s) 217
TaiI ACGT 2 cut(s) 166, 292
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 341
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.