Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007758.1

Orthogroup ID

OG0007194

Physical Location & Seq

Genomic Coordinates Reverse (-)

27513 .. 27897

Gene Structure 385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007758.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atgaagaaacaaaaggacagggagcaaaagcagctacaagagaatgtgattcttggacgttttggagggaaatccagaggtggttcaaaaagatctgtggagaagcgaaggcctgaggacagggttctaagagcaagtgaaggttacttcaaaaatggtgtacttgatgtgaagcatttgttacgtccaacatcatccagagacagggatgctggtgcccatgtgaacttctcaggtccaaagaagggaggtggaaagaagggaggtggaaaaaacaaagggaagaagggtggtaagaagcgccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4602

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

11.12

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007194)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44820 AT2G44820
fragaria_vesca	FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170 FvH4_3g25170
malus_domestica	MD12G1010900.v1.1
prunus_persica	Prupe.4G268800_v2.0.a1 Prupe.4G268800_v2.0.a1 Prupe.7G012800_v2.0.a1
pyrus_communis	pycom12g00840
rosa_chinensis	RchiOBHm_Chr5g0046151
rosa_laevigata	RLG00000034379
rosa_multiflora	Rmu_sc0001035.1_g000060 Rmu_sc0001035.1_g000070 Rmu_sc0007758.1_g000004
rosa_roxburghii	Rroxscaffold_1G00035420
rosa_rugosa	Rorug05G0225000 Rorug05G0225100
rosa_samantha	Rh5AG306300 Rh5BG314400 Rh5CG340900 Rh5DG324700
rosa_wichuraiana	Rw5G028620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	204, 245
AgsI	TTSAA	2 cut(s)	87, 151
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	304
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	217
BmsI	GCATC	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 245
Bse21I	CCTNAGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	194, 214
BseLI	CCNNNNNNNGG	2 cut(s)	204, 245
BseMII	CTCAG	2 cut(s)	105, 246
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	204, 245
BsmAI	GTCTC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	2 cut(s)	106, 245
BspLI	GGNNCC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	215
BssMI	GATC	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	114, 128, 232
BstF5I	GGATG	2 cut(s)	194, 214
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	1 cut(s)	95
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	194, 214
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	2 cut(s)	34, 112
CviKI_1	RGCY	2 cut(s)	34, 112
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	3 cut(s)	114, 128, 232
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
Eco147I	AGGCCT	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	224
FaiI	YATR	1 cut(s)	222
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	32
FokI	GGATG	2 cut(s)	181, 221
Fsp4HI	GCNGC	1 cut(s)	32
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	32
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	161, 226
Hpy188III	TCNNGA	2 cut(s)	75, 198
Hpy8I	GTNNAC	2 cut(s)	161, 226
HpyAV	CCTTC	5 cut(s)	102, 134, 238, 253, 280
HpyCH4IV	ACGT	2 cut(s)	58, 184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	3 cut(s)	114, 128, 232
HpySE526I	ACGT	2 cut(s)	58, 184
Hsp92II	CATG	1 cut(s)	224
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	8 cut(s)	4, 88, 106, 126, 190, 198, 211, 219
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	2 cut(s)	58, 184
MaeIII	GTNAC	2 cut(s)	143, 180
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	2 cut(s)	16, 295
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	5 cut(s)	59, 71, 109, 242, 257
MseI	TTAA	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	8 cut(s)	36, 61, 82, 145, 187, 238, 253, 268
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	236
SseBI	AGGCCT	1 cut(s)	112
StuI	AGGCCT	1 cut(s)	112
TaiI	ACGT	2 cut(s)	61, 187
TatI	WGTACW	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TseI	GCWGC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.