Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011044

Physical Location & Seq

Genomic Coordinates Forward (+)

18502987 .. 18504718

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTGGCCTTCCACATCACCTAGATTCACCATCACCACACCTTATCCACACCCACGCGCCGCCTCTTCTTTCTTACAGGTGAAAGCTTTCCAACGCGGCGACTTTGACCGTTTGGCTGATAACGTTAAGTCAGGTAAAGCATGGAGAGACGCGTGGAGAAGCGCTAACGATGGATTCGAGCAATTCGTTTTTGAGGCTAAGAAAACCGCTGAGCGAATTGATCGCCAATACGCTGTTTCTCGCCGCTTTAGCTCCGCTGCTAGCTCAGCCGCTGACCGTGCTCGTGAGATTGATCGTGAGTTTGGGATTACTCCTCGTGTTAGGACTGTCTCTGCCGATTTCAGTAGAAATTTCCCTAAGTACAGGAAGCAATTCAGTGCATTCTTGAATACACCGCTTGGTGGAAGTTTTGCTACTATTTTCTTCCTTTGGTTTGCTCTCTCTGGATGGCTGTTCCGAGTTATAATAATCGCCACTTGGGTTCTTCCAATTGCTGGCCCTCTTCTCATTGGTGCAGTCGCCAACAACTTTGTCATCAAGGGAGAATGCCCAGCATGTAAGAGGCAGTTTATAGGGTACAAGAACCAAATCATCAGATGTGAGGGATGTGGGAACATAGTGTGGCAACCACAAGGCGATTTCTTCTCAAAAGATGGCAACAACAACAACAACAATAATAATAGCAAGGGAAACTCTAAAAAGCCACCTAAGTCCCAAATCATTGATGTCGATTTTGAGGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

28.07

Weight (kDa)

9.93

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44870
fragaria_vesca	FvH4_7g33420
malus_domestica	MD01G1232400.v1.1 MD07G1304300.v1.1
prunus_persica	Prupe.2G322900_v2.0.a1 Prupe.2G322900_v2.0.a1 Prupe.2G322900_v2.0.a1
pyrus_communis	pycom01g24090
rosa_chinensis	RchiOBHm_Chr1g0383391
rosa_laevigata	RLG00000026105
rosa_multiflora	Rmu_co8439237.1_g000001 Rmu_sc0007173.1_g000010 Rmu_sc0012471.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277330
rosa_rugosa	Rorug01G0441200
rosa_samantha	Rh1AG467000 Rh1BG424300 Rh1CG437400 Rh1DG457000
rosa_wichuraiana	Rw1G040550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccII	CGCG	3 cut(s)	57, 96, 152
AciI	CCGC	7 cut(s)	60, 96, 207, 244, 255, 270, 395
AclI	AACGTT	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	349
AfaI	GTAC	2 cut(s)	362, 578
AfeI	AGCGCT	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	401, 494
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	388
AluBI	AGCT	3 cut(s)	86, 252, 264
AluI	AGCT	3 cut(s)	86, 252, 264
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	2 cut(s)	141, 334
AlwNI	CAGNNNCTG	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	163
AoxI	GGCC	2 cut(s)	5, 496
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	349
Asp700I	GAANNNNTTC	2 cut(s)	86, 371
AspLEI	GCGC	2 cut(s)	59, 164
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	4 cut(s)	9, 19, 25, 91
AsuNHI	GCTAGC	1 cut(s)	260
BarI	GAAGNNNNNNTAC	2 cut(s)	397, 429
BauI	CACGAG	2 cut(s)	282, 315
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	4 cut(s)	38, 164, 441, 647
BcoDI	GTCTC	2 cut(s)	141, 334
BfaI	CTAG	2 cut(s)	21, 261
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	5 cut(s)	60, 97, 244, 258, 270
BlpI	GCTNAGC	2 cut(s)	210, 265
BlsI	GCNGC	5 cut(s)	61, 98, 245, 259, 271
BmgT120I	GGNCC	1 cut(s)	497
BmtI	GCTAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	2 cut(s)	210, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 494
BseGI	GGATG	2 cut(s)	452, 611
BseLI	CCNNNNNNNGG	2 cut(s)	401, 494
BseMII	CTCAG	2 cut(s)	201, 279
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	244
BseYI	CCCAGC	1 cut(s)	550
BsgI	GTGCAG	1 cut(s)	534
Bsh1236I	CGCG	3 cut(s)	57, 96, 152
BshFI	GGCC	2 cut(s)	7, 498
BsiHKAI	GWGCWC	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	697
BslI	CCNNNNNNNGG	2 cut(s)	401, 494
BsmAI	GTCTC	2 cut(s)	141, 334
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	697
BsmI	GAATGC	2 cut(s)	380, 551
BsnI	GGCC	2 cut(s)	7, 498
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	220, 292
Bsp1720I	GCTNAGC	2 cut(s)	210, 265
BspACI	CCGC	7 cut(s)	60, 96, 207, 244, 255, 270, 395
BspANI	GGCC	2 cut(s)	7, 498
BspCNI	CTCAG	2 cut(s)	202, 278
BspFNI	CGCG	3 cut(s)	57, 96, 152
BspOI	GCTAGC	1 cut(s)	264
BssMI	GATC	2 cut(s)	220, 292
BssSI	CACGAG	2 cut(s)	282, 315
Bst2BI	CACGAG	2 cut(s)	282, 315
Bst4CI	ACNGT	3 cut(s)	110, 278, 328
Bst6I	CTCTTC	2 cut(s)	70, 507
BstC8I	GCNNGC	2 cut(s)	262, 496
BstDEI	CTNAG	5 cut(s)	198, 210, 265, 357, 708
BstF5I	GGATG	2 cut(s)	452, 611
BstFNI	CGCG	3 cut(s)	57, 96, 152
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	59, 164
BstKTI	GATC	2 cut(s)	223, 295
BstMAI	GTCTC	2 cut(s)	141, 334
BstMBI	GATC	2 cut(s)	220, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 266, 278
BstNSI	RCATGY	1 cut(s)	558
BstUI	CGCG	3 cut(s)	57, 96, 152
BstV1I	GCAGC	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	7, 498
BtsCI	GGATG	2 cut(s)	452, 611
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	262, 496
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	2 cut(s)	59, 164
Cfr13I	GGNCC	1 cut(s)	497
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	361, 577
CviAII	CATG	2 cut(s)	141, 555
CviQI	GTAC	2 cut(s)	361, 577
DdeI	CTNAG	5 cut(s)	198, 210, 265, 357, 708
DpnI	GATC	2 cut(s)	222, 294
DpnII	GATC	2 cut(s)	220, 292
Eam1104I	CTCTTC	2 cut(s)	70, 507
EarI	CTCTTC	2 cut(s)	70, 507
Eco47III	AGCGCT	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	2 cut(s)	144, 558
FaiI	YATR	5 cut(s)	142, 464, 556, 572, 617
FaqI	GGGAC	1 cut(s)	697
FatI	CATG	2 cut(s)	140, 554
Fnu4HI	GCNGC	5 cut(s)	60, 97, 244, 258, 270
FokI	GGATG	2 cut(s)	459, 618
Fsp4HI	GCNGC	5 cut(s)	60, 97, 244, 258, 270
FspBI	CTAG	2 cut(s)	21, 261
GlaI	GCGC	2 cut(s)	58, 163
GluI	GCNGC	5 cut(s)	60, 97, 244, 258, 270
GsaI	CCCAGC	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	7, 498
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	2 cut(s)	59, 164
Hin1II	CATG	2 cut(s)	144, 558
Hin6I	GCGC	2 cut(s)	57, 162
HinP1I	GCGC	2 cut(s)	57, 162
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	2 cut(s)	24, 174
HphI	GGTGA	4 cut(s)	9, 19, 25, 91
Hpy188I	TCNGA	2 cut(s)	458, 596
Hpy188III	TCNNGA	4 cut(s)	284, 296, 385, 444
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	3 cut(s)	110, 278, 328
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	380, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 266, 278
HpyF3I	CTNAG	5 cut(s)	198, 210, 265, 357, 708
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	144, 558
HspAI	GCGC	2 cut(s)	57, 162
Kzo9I	GATC	2 cut(s)	220, 292
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	6 cut(s)	62, 117, 349, 429, 480, 564
Lsp1109I	GCAGC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	21, 261
MaeII	ACGT	1 cut(s)	123
MalI	GATC	2 cut(s)	222, 294
MboI	GATC	2 cut(s)	220, 292
MboII	GAAGA	5 cut(s)	57, 415, 476, 494, 634
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	5 cut(s)	182, 216, 349, 371, 489
MluI	ACGCGT	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	7 cut(s)	73, 187, 324, 510, 555, 595, 730
MroXI	GAANNNNTTC	2 cut(s)	86, 371
MseI	TTAA	1 cut(s)	126
MspA1I	CMGCKG	3 cut(s)	209, 257, 272
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	2 cut(s)	380, 551
MvnI	CGCG	3 cut(s)	57, 96, 152
MwoI	GCNNNNNNNGC	3 cut(s)	249, 266, 278
NdeII	GATC	2 cut(s)	220, 292
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	2 cut(s)	144, 558
NspI	RCATGY	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 183
PctI	GAATGC	2 cut(s)	380, 551
PdmI	GAANNNNTTC	2 cut(s)	86, 371
PfeI	GAWTC	2 cut(s)	24, 174
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	5 cut(s)	61, 98, 245, 259, 271
PsiI	TTATAA	1 cut(s)	464
Psp1406I	AACGTT	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	550
PspPI	GGNCC	1 cut(s)	497
PstNI	CAGNNNCTG	1 cut(s)	272
RsaI	GTAC	2 cut(s)	362, 578
RsaNI	GTAC	2 cut(s)	361, 577
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	5 cut(s)	60, 97, 244, 258, 270
Sau3AI	GATC	2 cut(s)	220, 292
Sau96I	GGNCC	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	9 cut(s)	22, 43, 81, 88, 126, 136, 254, 266, 709
Sse9I	AATT	5 cut(s)	182, 216, 349, 371, 489
SsiI	CCGC	7 cut(s)	60, 96, 207, 244, 255, 270, 395
SspMI	CTAG	2 cut(s)	21, 261
TaaI	ACNGT	3 cut(s)	110, 278, 328
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	177, 729
TasI	AATT	5 cut(s)	182, 216, 349, 371, 489
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	4 cut(s)	62, 99, 246, 272
TfiI	GAWTC	2 cut(s)	24, 174
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	257
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	494
XapI	RAATTY	1 cut(s)	349
XceI	RCATGY	1 cut(s)	558
XmnI	GAANNNNTTC	2 cut(s)	86, 371
XspI	CTAG	2 cut(s)	21, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.