Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007173.1

Orthogroup ID

OG0011044

Physical Location & Seq

Genomic Coordinates Forward (+)

21738 .. 22834

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007173.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggcgaccaccaatctccgatgccctcaactagcggcggcgccgcttccgctgggccgggccaggaggcccagcagcggcggaagagcccgaatcccaatcggggcagcccgccaggtgtcgaaaatccaggcctttcagcgcagcgacatcgacggcttcgcgaagcggatagcctccggcgaggcctggcaggacgcgtggcggtccgccaacgacggattcgaacggttcttgttcgaggccaagaaaaccgccgagcggttggaccggcagtactccgtttcgcggcggctcgattcgctcgctcagtccgccatgattcgcgcgcgcgagattgatagggacttcgagattgggacccgctggcgcgctttttctatggatttcgccagaaatttgcctaggtacaggaagcagcttagtgatttcttggacaccccagttgggagaagctttgcgacgattttcttcctgtggcttgcattatctgggtggctttttcggggtctgatactcgccacatgggtgctgccatttgctgctcctctagttattggagctgttgccaataaccttgttattaagggggcttgtcctgcttgcaagaggcaatttgttggatacaagaaccaaataattcgatgtcaaagctgcggaaacactgtgtggcagccaaagaaaggaggaggaccggacttctttaacagagataggagaggctcttcttcgtcaaagaaagagccggagatcattgatgttgagtttgaggagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.21

Weight (kDa)

10.4

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44870
fragaria_vesca	FvH4_7g33420
malus_domestica	MD01G1232400.v1.1 MD07G1304300.v1.1
prunus_persica	Prupe.2G322900_v2.0.a1 Prupe.2G322900_v2.0.a1 Prupe.2G322900_v2.0.a1
pyrus_communis	pycom01g24090
rosa_chinensis	RchiOBHm_Chr1g0383391
rosa_laevigata	RLG00000026105
rosa_multiflora	Rmu_co8439237.1_g000001 Rmu_sc0007173.1_g000010 Rmu_sc0012471.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277330
rosa_rugosa	Rorug01G0441200
rosa_samantha	Rh1AG467000 Rh1BG424300 Rh1CG437400 Rh1DG457000
rosa_wichuraiana	Rw1G040550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	262
AccII	CGCG	8 cut(s)	164, 200, 289, 327, 329, 331, 333, 372
AcsI	RAATTY	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	669
AfaI	GTAC	2 cut(s)	278, 410
AfiI	CCNNNNNNNGG	6 cut(s)	77, 103, 261, 288, 447, 683
AflIII	ACRYGT	1 cut(s)	198
AjnI	CCWGG	4 cut(s)	62, 114, 129, 188
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	4 cut(s)	421, 456, 563, 654
AluI	AGCT	4 cut(s)	421, 456, 563, 654
AoxI	GGCC	6 cut(s)	55, 60, 68, 132, 186, 243
ApeKI	GCWGC	8 cut(s)	75, 107, 144, 418, 532, 542, 654, 673
ApoI	RAATTY	1 cut(s)	397
AspA2I	CCTAGG	1 cut(s)	404
AspLEI	GCGC	7 cut(s)	43, 144, 329, 331, 333, 372, 374
AspS9I	GGNCC	7 cut(s)	55, 60, 69, 207, 268, 360, 692
AsuC2I	CCSGG	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	225
AvaII	GGWCC	4 cut(s)	207, 268, 360, 692
AvrII	CCTAGG	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	91
BbvI	GCAGC	8 cut(s)	87, 119, 156, 430, 519, 529, 641, 685
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	4 cut(s)	64, 116, 131, 190
BciVI	GTATCC	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	59
BfaI	CTAG	3 cut(s)	32, 405, 551
BfoI	RGCGCY	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	617
BlnI	CCTAGG	1 cut(s)	404
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	5 cut(s)	59, 64, 116, 131, 190
Bme18I	GGWCC	4 cut(s)	207, 268, 360, 692
BmgT120I	GGNCC	7 cut(s)	55, 60, 69, 207, 268, 360, 692
BmiI	GGNNCC	3 cut(s)	42, 361, 362
BmrFI	CCNGG	5 cut(s)	59, 64, 116, 131, 190
BmrI	ACTGGG	1 cut(s)	437
BmsI	GCATC	1 cut(s)	11
BmuI	ACTGGG	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	6 cut(s)	77, 103, 261, 288, 447, 683
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	443
BseBI	CCWGG	4 cut(s)	64, 116, 131, 190
BseDI	CCNNGG	1 cut(s)	404
BseLI	CCNNNNNNNGG	6 cut(s)	77, 103, 261, 288, 447, 683
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	443
BsePI	GCGCGC	3 cut(s)	327, 329, 370
BseRI	GAGGAG	2 cut(s)	537, 702
BseXI	GCAGC	8 cut(s)	87, 119, 156, 430, 519, 529, 641, 685
BseYI	CCCAGC	2 cut(s)	52, 71
Bsh1236I	CGCG	8 cut(s)	164, 200, 289, 327, 329, 331, 333, 372
BshFI	GGCC	6 cut(s)	57, 62, 70, 134, 188, 245
BshNI	GGYRCC	1 cut(s)	40
BsiSI	CCGG	5 cut(s)	58, 180, 271, 695, 746
BslFI	GGGAC	2 cut(s)	359, 373
BslI	CCNNNNNNNGG	6 cut(s)	77, 103, 261, 288, 447, 683
BsmFI	GGGAC	2 cut(s)	359, 373
BsnI	GGCC	6 cut(s)	57, 62, 70, 134, 188, 245
Bsp119I	TTCGAA	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	750
Bsp68I	TCGCGA	1 cut(s)	164
BspANI	GGCC	6 cut(s)	57, 62, 70, 134, 188, 245
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	8 cut(s)	164, 200, 289, 327, 329, 331, 333, 372
BspLI	GGNNCC	3 cut(s)	42, 361, 362
BspQI	GCTCTTC	2 cut(s)	79, 730
BspT104I	TTCGAA	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	40
BsrBI	CCGCTC	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	404
BssHII	GCGCGC	3 cut(s)	327, 329, 370
BssMI	GATC	1 cut(s)	750
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	404
Bst2UI	CCWGG	4 cut(s)	64, 116, 131, 190
Bst4CI	ACNGT	2 cut(s)	231, 667
Bst6I	CTCTTC	2 cut(s)	79, 730
BstACI	GRCGYC	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	8 cut(s)	112, 306, 329, 331, 368, 372, 483, 604
BstDEI	CTNAG	2 cut(s)	309, 422
BstFNI	CGCG	8 cut(s)	164, 200, 289, 327, 329, 331, 333, 372
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	7 cut(s)	43, 144, 329, 331, 333, 372, 374
BstKTI	GATC	1 cut(s)	753
BstMBI	GATC	1 cut(s)	750
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 301, 314, 599
BstNI	CCWGG	4 cut(s)	64, 116, 131, 190
BstSCI	CCNGG	5 cut(s)	57, 62, 114, 129, 188
BstUI	CGCG	8 cut(s)	164, 200, 289, 327, 329, 331, 333, 372
BstV1I	GCAGC	8 cut(s)	87, 119, 156, 430, 519, 529, 641, 685
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	6 cut(s)	57, 62, 70, 134, 188, 245
BtsIMutI	CAGTG	1 cut(s)	663
BtuMI	TCGCGA	1 cut(s)	164
Cac8I	GCNNGC	8 cut(s)	112, 306, 329, 331, 368, 372, 483, 604
CfoI	GCGC	7 cut(s)	43, 144, 329, 331, 333, 372, 374
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	7 cut(s)	55, 60, 69, 207, 268, 360, 692
CpoI	CGGWCCG	1 cut(s)	207
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	277, 409
CspI	CGGWCCG	1 cut(s)	207
CviAII	CATG	2 cut(s)	319, 525
CviQI	GTAC	2 cut(s)	277, 409
DdeI	CTNAG	2 cut(s)	309, 422
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	1 cut(s)	752
DpnII	GATC	1 cut(s)	750
DraIII	CACNNNGTG	1 cut(s)	669
Eam1104I	CTCTTC	2 cut(s)	79, 730
EarI	CTCTTC	2 cut(s)	79, 730
EciI	GGCGGA	3 cut(s)	96, 199, 304
Eco130I	CCWWGG	1 cut(s)	404
Eco147I	AGGCCT	2 cut(s)	134, 188
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	4 cut(s)	207, 268, 360, 692
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRII	CCWGG	4 cut(s)	62, 114, 129, 188
EcoT14I	CCWWGG	1 cut(s)	404
EcoT38I	GRGCYC	1 cut(s)	91
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	2 cut(s)	322, 528
FaiI	YATR	3 cut(s)	320, 383, 526
FaqI	GGGAC	2 cut(s)	359, 373
FatI	CATG	2 cut(s)	318, 524
FauI	CCCGC	2 cut(s)	119, 371
FriOI	GRGCYC	1 cut(s)	91
FspBI	CTAG	3 cut(s)	32, 405, 551
GlaI	GCGC	7 cut(s)	42, 143, 328, 330, 332, 371, 373
GsaI	CCCAGC	2 cut(s)	56, 75
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	6 cut(s)	57, 62, 70, 134, 188, 245
HapII	CCGG	5 cut(s)	58, 180, 271, 695, 746
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	7 cut(s)	43, 144, 329, 331, 333, 372, 374
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	322, 528
Hin6I	GCGC	7 cut(s)	41, 142, 327, 329, 331, 370, 372
HinP1I	GCGC	7 cut(s)	41, 142, 327, 329, 331, 370, 372
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	4 cut(s)	93, 222, 299, 322
HpaII	CCGG	5 cut(s)	58, 180, 271, 695, 746
Hpy188I	TCNGA	2 cut(s)	20, 513
Hpy188III	TCNNGA	2 cut(s)	163, 352
Hpy99I	CGWCG	3 cut(s)	158, 221, 466
HpyCH4III	ACNGT	2 cut(s)	231, 667
HpyCH4V	TGCA	2 cut(s)	485, 606
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 301, 314, 599
HpyF3I	CTNAG	2 cut(s)	309, 422
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	322, 528
HspAI	GCGC	7 cut(s)	41, 142, 327, 329, 331, 370, 372
KasI	GGCGCC	1 cut(s)	40
KflI	GGGWCCC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	750
LguI	GCTCTTC	2 cut(s)	79, 730
LmnI	GCTCC	2 cut(s)	550, 560
Lsp1109I	GCAGC	8 cut(s)	87, 119, 156, 430, 519, 529, 641, 685
LweI	GCATC	1 cut(s)	11
MaeI	CTAG	3 cut(s)	32, 405, 551
MalI	GATC	1 cut(s)	752
MauBI	CGCGCGCG	2 cut(s)	327, 329
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	1 cut(s)	750
MboII	GAAGA	4 cut(s)	96, 463, 717, 720
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	397, 614, 639
MluI	ACGCGT	1 cut(s)	198
Mly113I	GGCGCC	1 cut(s)	41
MmeI	TCCRAC	2 cut(s)	246, 601
MseI	TTAA	2 cut(s)	585, 705
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	3 cut(s)	52, 78, 366
MspI	CCGG	5 cut(s)	58, 180, 271, 695, 746
MspR9I	CCNGG	5 cut(s)	59, 64, 116, 131, 190
MvaI	CCWGG	4 cut(s)	64, 116, 131, 190
MvnI	CGCG	8 cut(s)	164, 200, 289, 327, 329, 331, 333, 372
MwoI	GCNNNNNNNGC	4 cut(s)	49, 301, 314, 599
NarI	GGCGCC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	1 cut(s)	750
NlaIII	CATG	2 cut(s)	322, 528
NlaIV	GGNNCC	3 cut(s)	42, 361, 362
NmeAIII	GCCGAG	1 cut(s)	283
NruI	TCGCGA	1 cut(s)	164
NspV	TTCGAA	1 cut(s)	225
OliI	CACNNNNGTG	1 cut(s)	527
PauI	GCGCGC	3 cut(s)	327, 329, 370
PceI	AGGCCT	2 cut(s)	134, 188
PciSI	GCTCTTC	2 cut(s)	79, 730
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	4 cut(s)	93, 222, 299, 322
PluTI	GGCGCC	1 cut(s)	44
PpuMI	RGGWCCY	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	360
Psp6I	CCWGG	4 cut(s)	62, 114, 129, 188
PspFI	CCCAGC	2 cut(s)	52, 71
PspGI	CCWGG	4 cut(s)	62, 114, 129, 188
PspN4I	GGNNCC	3 cut(s)	42, 361, 362
PspPI	GGNCC	7 cut(s)	55, 60, 69, 207, 268, 360, 692
PspPPI	RGGWCCY	1 cut(s)	360
PteI	GCGCGC	3 cut(s)	327, 329, 370
RruI	TCGCGA	1 cut(s)	164
RsaI	GTAC	2 cut(s)	278, 410
RsaNI	GTAC	2 cut(s)	277, 409
RseI	CAYNNNNRTG	1 cut(s)	527
Rsr2I	CGGWCCG	1 cut(s)	207
RsrII	CGGWCCG	1 cut(s)	207
SapI	GCTCTTC	2 cut(s)	79, 730
SaqAI	TTAA	2 cut(s)	585, 705
Sau3AI	GATC	1 cut(s)	750
Sau96I	GGNCC	7 cut(s)	55, 60, 69, 207, 268, 360, 692
ScaI	AGTACT	1 cut(s)	278
ScrFI	CCNGG	5 cut(s)	59, 64, 116, 131, 190
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	7 cut(s)	120, 410, 423, 458, 565, 579, 656
SfaNI	GCATC	1 cut(s)	11
SfoI	GGCGCC	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	225
SinI	GGWCC	4 cut(s)	207, 268, 360, 692
SmiMI	CAYNNNNRTG	1 cut(s)	527
Sse9I	AATT	3 cut(s)	397, 614, 639
SseBI	AGGCCT	2 cut(s)	134, 188
SspDI	GGCGCC	1 cut(s)	40
SspMI	CTAG	3 cut(s)	32, 405, 551
StuI	AGGCCT	2 cut(s)	134, 188
StyD4I	CCNGG	5 cut(s)	57, 62, 114, 129, 188
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	231, 667
TaqI	TCGA	7 cut(s)	122, 153, 225, 240, 297, 351, 643
TasI	AATT	3 cut(s)	397, 614, 639
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	6 cut(s)	38, 41, 46, 81, 292, 295
TfiI	GAWTC	4 cut(s)	93, 222, 299, 322
Tru1I	TTAA	2 cut(s)	585, 705
Tru9I	TTAA	2 cut(s)	585, 705
TscAI	CASTG	1 cut(s)	670
TseI	GCWGC	8 cut(s)	75, 107, 144, 418, 532, 542, 654, 673
TspGWI	ACGGA	2 cut(s)	234, 271
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	4 cut(s)	207, 268, 360, 692
XapI	RAATTY	1 cut(s)	397
XmaJI	CCTAGG	1 cut(s)	404
XspI	CTAG	3 cut(s)	32, 405, 551
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.