Rh1BG424300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011044
Physical Location & Seq
Reverse (-)
54315599 .. 54319274
3676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG424300.1

Sequence Viewer

Length: 594 bp
ATGGCGACCACCAATCTCCGATGCCCTCAACTAGCGGCGGCGCCGCTTCCGCTGGGCCGGGCCAGGAGGCCCAGCAGCGGCGGAAGAGCCCGAATCCCAATCGGGGCGACCCGCCAGGTGTCGAAAATCCAGGCCTTTCAGCGCAGCGACATCGACGGCTTCGCGAAGCGGATAGCCTCCGGCGAGGCCTGGCAGGACGCGTGGCGGTCCGCCAACGACGGATTCGAACGGTTCTTGTTCGAGGCCAAGAAAACCGCCGAGCGGTTGGACCGGCAGTACTCCGTTTCGCGGCGGCTCGATTCGCTCGCTCAGTCCGCCATGATTCGCGCGCGCGAGATTGATAGGGACTTCGAGATTGGGACCCGCTGGCGCGCTTTTTCTATGGATTTCGCCAGAAATTTGCCTAGGTACAGGAAGCAGCTTAGTGATTTCTTGGACACCCCAGTTGGGAGAAGCTTTGCGACGATTTTCTTCCTGTGGCTTGCATTATCTGGGTGGCTTTTTCGGGGTCTGATACTCGCCACATGGGTGCTGCCATTTGCTGCTCCTCTAGTCATTGGAGCTGTTGCCAATAACCTTGTTATTAAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.25

Weight (kDa)

11.33

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 262
AccII CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
AcsI RAATTY 1 cut(s) 397
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 2 cut(s) 278, 410
AfiI CCNNNNNNNGG 5 cut(s) 77, 103, 261, 288, 447
AflIII ACRYGT 1 cut(s) 198
AjnI CCWGG 4 cut(s) 62, 114, 129, 188
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AleI CACNNNNGTG 1 cut(s) 527
AluBI AGCT 3 cut(s) 421, 456, 563
AluI AGCT 3 cut(s) 421, 456, 563
AoxI GGCC 6 cut(s) 55, 60, 68, 132, 186, 243
ApeKI GCWGC 5 cut(s) 75, 144, 418, 532, 542
ApoI RAATTY 1 cut(s) 397
AspA2I CCTAGG 1 cut(s) 404
AspLEI GCGC 7 cut(s) 43, 144, 329, 331, 333, 372, 374
AspS9I GGNCC 6 cut(s) 55, 60, 69, 207, 268, 360
AsuC2I CCSGG 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 225
AvaII GGWCC 3 cut(s) 207, 268, 360
AvrII CCTAGG 1 cut(s) 404
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 91
BbvI GCAGC 5 cut(s) 87, 156, 430, 519, 529
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 4 cut(s) 64, 116, 131, 190
BcnI CCSGG 1 cut(s) 59
BfaI CTAG 3 cut(s) 32, 405, 551
BfoI RGCGCY 1 cut(s) 44
BlnI CCTAGG 1 cut(s) 404
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 5 cut(s) 59, 64, 116, 131, 190
Bme18I GGWCC 3 cut(s) 207, 268, 360
BmgT120I GGNCC 6 cut(s) 55, 60, 69, 207, 268, 360
BmiI GGNNCC 3 cut(s) 42, 361, 362
BmrFI CCNGG 5 cut(s) 59, 64, 116, 131, 190
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 1 cut(s) 11
BmuI ACTGGG 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 404
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 103, 261, 288, 447
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 443
BseBI CCWGG 4 cut(s) 64, 116, 131, 190
BseDI CCNNGG 1 cut(s) 404
BseLI CCNNNNNNNGG 5 cut(s) 77, 103, 261, 288, 447
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 443
BsePI GCGCGC 3 cut(s) 327, 329, 370
BseRI GAGGAG 1 cut(s) 537
BseXI GCAGC 5 cut(s) 87, 156, 430, 519, 529
BseYI CCCAGC 2 cut(s) 52, 71
Bsh1236I CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
BshFI GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
BshNI GGYRCC 1 cut(s) 40
BsiSI CCGG 3 cut(s) 58, 180, 271
BslFI GGGAC 2 cut(s) 359, 373
BslI CCNNNNNNNGG 5 cut(s) 77, 103, 261, 288, 447
BsmFI GGGAC 2 cut(s) 359, 373
BsnI GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 91
Bsp68I TCGCGA 1 cut(s) 164
BspANI GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
BspLI GGNNCC 3 cut(s) 42, 361, 362
BspQI GCTCTTC 1 cut(s) 79
BspT104I TTCGAA 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 404
BssHII GCGCGC 3 cut(s) 327, 329, 370
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 4 cut(s) 64, 116, 131, 190
Bst4CI ACNGT 1 cut(s) 231
Bst6I CTCTTC 1 cut(s) 79
BstACI GRCGYC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 6 cut(s) 306, 329, 331, 368, 372, 483
BstDEI CTNAG 2 cut(s) 309, 422
BstFNI CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 7 cut(s) 43, 144, 329, 331, 333, 372, 374
BstMWI GCNNNNNNNGC 3 cut(s) 49, 301, 314
BstNI CCWGG 4 cut(s) 64, 116, 131, 190
BstSCI CCNGG 5 cut(s) 57, 62, 114, 129, 188
BstUI CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
BstV1I GCAGC 5 cut(s) 87, 156, 430, 519, 529
BsuRI GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
BtuMI TCGCGA 1 cut(s) 164
Cac8I GCNNGC 6 cut(s) 306, 329, 331, 368, 372, 483
CfoI GCGC 7 cut(s) 43, 144, 329, 331, 333, 372, 374
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 6 cut(s) 55, 60, 69, 207, 268, 360
CpoI CGGWCCG 1 cut(s) 207
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 277, 409
CspI CGGWCCG 1 cut(s) 207
CviAII CATG 2 cut(s) 319, 525
CviQI GTAC 2 cut(s) 277, 409
DdeI CTNAG 2 cut(s) 309, 422
DinI GGCGCC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EciI GGCGGA 3 cut(s) 96, 199, 304
Eco130I CCWWGG 1 cut(s) 404
Eco147I AGGCCT 2 cut(s) 134, 188
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 3 cut(s) 207, 268, 360
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 4 cut(s) 62, 114, 129, 188
EcoT14I CCWWGG 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 91
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 322, 528
FaiI YATR 4 cut(s) 320, 383, 526, 592
FaqI GGGAC 2 cut(s) 359, 373
FatI CATG 2 cut(s) 318, 524
FauI CCCGC 2 cut(s) 119, 371
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 3 cut(s) 32, 405, 551
GlaI GCGC 7 cut(s) 42, 143, 328, 330, 332, 371, 373
GsaI CCCAGC 2 cut(s) 56, 75
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
HapII CCGG 3 cut(s) 58, 180, 271
HgaI GACGC 1 cut(s) 206
HhaI GCGC 7 cut(s) 43, 144, 329, 331, 333, 372, 374
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 322, 528
Hin6I GCGC 7 cut(s) 41, 142, 327, 329, 331, 370, 372
HinP1I GCGC 7 cut(s) 41, 142, 327, 329, 331, 370, 372
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 4 cut(s) 93, 222, 299, 322
HpaII CCGG 3 cut(s) 58, 180, 271
Hpy188I TCNGA 2 cut(s) 20, 513
Hpy188III TCNNGA 2 cut(s) 163, 352
Hpy99I CGWCG 3 cut(s) 158, 221, 466
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 301, 314
HpyF3I CTNAG 2 cut(s) 309, 422
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 322, 528
HspAI GCGC 7 cut(s) 41, 142, 327, 329, 331, 370, 372
KasI GGCGCC 1 cut(s) 40
KflI GGGWCCC 1 cut(s) 360
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 550, 560
Lsp1109I GCAGC 5 cut(s) 87, 156, 430, 519, 529
LweI GCATC 1 cut(s) 11
MaeI CTAG 3 cut(s) 32, 405, 551
MauBI CGCGCGCG 2 cut(s) 327, 329
MbiI CCGCTC 1 cut(s) 262
MboII GAAGA 2 cut(s) 96, 463
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 397
MluI ACGCGT 1 cut(s) 198
Mly113I GGCGCC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 36, 60, 178, 187, 235, 558
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 3 cut(s) 52, 78, 366
MspI CCGG 3 cut(s) 58, 180, 271
MspR9I CCNGG 5 cut(s) 59, 64, 116, 131, 190
MvaI CCWGG 4 cut(s) 64, 116, 131, 190
MvnI CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
MwoI GCNNNNNNNGC 3 cut(s) 49, 301, 314
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 1 cut(s) 59
NlaIII CATG 2 cut(s) 322, 528
NlaIV GGNNCC 3 cut(s) 42, 361, 362
NmeAIII GCCGAG 1 cut(s) 283
NruI TCGCGA 1 cut(s) 164
NspV TTCGAA 1 cut(s) 225
OliI CACNNNNGTG 1 cut(s) 527
PauI GCGCGC 3 cut(s) 327, 329, 370
PceI AGGCCT 2 cut(s) 134, 188
PciSI GCTCTTC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 4 cut(s) 93, 222, 299, 322
PluTI GGCGCC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 360
Psp6I CCWGG 4 cut(s) 62, 114, 129, 188
PspFI CCCAGC 2 cut(s) 52, 71
PspGI CCWGG 4 cut(s) 62, 114, 129, 188
PspN4I GGNNCC 3 cut(s) 42, 361, 362
PspPI GGNCC 6 cut(s) 55, 60, 69, 207, 268, 360
PspPPI RGGWCCY 1 cut(s) 360
PteI GCGCGC 3 cut(s) 327, 329, 370
RruI TCGCGA 1 cut(s) 164
RsaI GTAC 2 cut(s) 278, 410
RsaNI GTAC 2 cut(s) 277, 409
RseI CAYNNNNRTG 1 cut(s) 527
Rsr2I CGGWCCG 1 cut(s) 207
RsrII CGGWCCG 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 585
Sau96I GGNCC 6 cut(s) 55, 60, 69, 207, 268, 360
ScaI AGTACT 1 cut(s) 278
ScrFI CCNGG 5 cut(s) 59, 64, 116, 131, 190
SduI GDGCHC 1 cut(s) 91
SetI ASST 7 cut(s) 120, 410, 423, 458, 565, 579, 591
SfaNI GCATC 1 cut(s) 11
SfoI GGCGCC 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 225
SinI GGWCC 3 cut(s) 207, 268, 360
SmiMI CAYNNNNRTG 1 cut(s) 527
Sse9I AATT 1 cut(s) 397
SseBI AGGCCT 2 cut(s) 134, 188
SspDI GGCGCC 1 cut(s) 40
SspMI CTAG 3 cut(s) 32, 405, 551
StuI AGGCCT 2 cut(s) 134, 188
StyD4I CCNGG 5 cut(s) 57, 62, 114, 129, 188
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 6 cut(s) 122, 153, 225, 240, 297, 351
TasI AATT 1 cut(s) 397
TatI WGTACW 1 cut(s) 276
TauI GCSGC 6 cut(s) 38, 41, 46, 81, 292, 295
TfiI GAWTC 4 cut(s) 93, 222, 299, 322
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TseI GCWGC 5 cut(s) 75, 144, 418, 532, 542
TspGWI ACGGA 2 cut(s) 234, 271
VpaK11BI GGWCC 3 cut(s) 207, 268, 360
XapI RAATTY 1 cut(s) 397
XmaJI CCTAGG 1 cut(s) 404
XspI CTAG 3 cut(s) 32, 405, 551
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.