Rorug01G0441200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0011044
Physical Location & Seq
Reverse (-)
53888115 .. 53889373
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0441200.1

Sequence Viewer

Length: 951 bp
ATGGAATTAGACGGTGACTCCCATATAACTCTGCGAAGATGGGAAGGCCTGCCTAGTGACATAGTGCAGAAGATTCTAGTTGAGTCTGATTTTGATGACACCTCTGGTTTAACTTCTCTCATTTCTCGGCTCCATTGCGGTGCCGTTTGTAGTGCATGGCGTTCGATTCTCTCTGACCCCCAGCTTTGGAATACACTTGACTTGTCCACAATGAAATCTGATTTCATCTACATTCATGTCGAGCCCGATGTTTATGTTTCTGAAAAGACAGATTCGAGATTGAATTGCATTTTGAAGACTTCATTGAGTCTCAGCAGGAGAAATATAACCACCCTTCTCTTCAATCTCAACTTGTATGTTCCTGACCATCTCTTCACTTACACTGCTGAAAGATCCCCGAAGCTGAAACGACTGGTTATGCCGGTATGGAACAGGATAAGCATTGCCGGAATCCGTAAGGCCATTGCTTCATGGAAAGACCTTGAGTCCCTTACAATAGGTAACATCAATAGTTACAACTACGACTTCCTCATGAGGCAGATTTCAACCAATTGCAAGAACTTCAGTGAGTTGAAGTTGATCGGAACTTGCAATTTCTTTGCTTCAGCACTAGTTAGATATGTTCCGAAACTGAAAGTTTTGAGCCTCCGGTGCTCGAATCTCTTGAAAGAGGATTTGATCGCCATATTAAATGGATTACAAGACTTGGAAGTTCTGAATATATCACATTGCGTTTTGCTAAATACTCGACCTAGAACGAGGATTATTCTTACAGAGCTTGATCCATTTATTCTTGGCAAGGCTTTTAGGTTAAGGAGATTCATAACGTGCATGAAATCTGAGTCGTGCGTCATGTGCCAAAGGGCCAGAGAAGACGAGGGGATCATGAGGTGGTATAGGTATGAAGAAGGGTTATGGAAAGTAGATGAGGTCGACTCTCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

36.43

Weight (kDa)

8.28

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 14 - 68 1.5e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 140
AccI GTMKAC 1 cut(s) 933
AciI CCGC 1 cut(s) 138
AclWI GGATC 3 cut(s) 387, 776, 890
AcuI CTGAAG 2 cut(s) 547, 588
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 6 cut(s) 283, 295, 343, 546, 574, 667
AhdI GACNNNNNGTC 1 cut(s) 484
AhlI ACTAGT 1 cut(s) 610
AluBI AGCT 3 cut(s) 184, 403, 778
AluI AGCT 3 cut(s) 184, 403, 778
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 3 cut(s) 387, 776, 890
AoxI GGCC 3 cut(s) 46, 459, 864
AspS9I GGNCC 1 cut(s) 864
AsuHPI GGTGA 1 cut(s) 26
BanI GGYRCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 2 cut(s) 302, 879
Bbv12I GWGCWC 1 cut(s) 656
BccI CCATC 2 cut(s) 33, 375
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 3 cut(s) 144, 178, 923
BcoDI GTCTC 1 cut(s) 314
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 4 cut(s) 54, 77, 611, 753
BmeRI GACNNNNNGTC 1 cut(s) 484
BmgT120I GGNCC 1 cut(s) 864
BmiI GGNNCC 2 cut(s) 131, 142
BpiI GAAGAC 2 cut(s) 302, 879
BplI GAGNNNNNCTC 1 cut(s) 920
BpuEI CTTGAG 1 cut(s) 503
BsaWI WCCGGW 1 cut(s) 648
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 417
Bse3DI GCAATG 4 cut(s) 133, 441, 462, 727
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 4 cut(s) 133, 441, 462, 727
BseMII CTCAG 2 cut(s) 325, 831
BseNI ACTGG 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 86
BshFI GGCC 3 cut(s) 48, 461, 866
BshNI GGYRCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 3 cut(s) 422, 447, 649
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 3 cut(s) 48, 461, 866
Bsp1286I GDGCHC 2 cut(s) 246, 656
Bsp143I GATC 5 cut(s) 392, 579, 678, 781, 882
BspACI CCGC 1 cut(s) 138
BspANI GGCC 3 cut(s) 48, 461, 866
BspCNI CTCAG 2 cut(s) 324, 832
BspHI TCATGA 2 cut(s) 531, 885
BspLI GGNNCC 2 cut(s) 131, 142
BspPI GGATC 3 cut(s) 387, 776, 890
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 4 cut(s) 133, 441, 462, 727
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 1 cut(s) 417
BssAI RCCGGY 1 cut(s) 421
BssMI GATC 5 cut(s) 392, 579, 678, 781, 882
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 344, 377
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 311, 840
BstKTI GATC 5 cut(s) 395, 582, 681, 784, 885
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 5 cut(s) 392, 579, 678, 781, 882
BstMWI GCNNNNNNNGC 2 cut(s) 651, 855
BstV2I GAAGAC 2 cut(s) 302, 879
BstX2I RGATCY 1 cut(s) 392
BstYI RGATCY 1 cut(s) 392
BsuRI GGCC 3 cut(s) 48, 461, 866
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 381, 571
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 2 cut(s) 531, 885
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 864
CseI GACGC 1 cut(s) 838
CviAII CATG 7 cut(s) 156, 236, 471, 532, 832, 853, 886
DdeI CTNAG 2 cut(s) 311, 840
DpnI GATC 5 cut(s) 394, 581, 680, 783, 884
DpnII GATC 5 cut(s) 392, 579, 678, 781, 882
DriI GACNNNNNGTC 1 cut(s) 484
Eam1104I CTCTTC 2 cut(s) 344, 377
Eam1105I GACNNNNNGTC 1 cut(s) 484
EarI CTCTTC 2 cut(s) 344, 377
Eco147I AGGCCT 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 246
Eco57I CTGAAG 2 cut(s) 547, 588
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 7 cut(s) 159, 239, 474, 535, 835, 856, 889
FaqI GGGAC 1 cut(s) 472
FatI CATG 7 cut(s) 155, 235, 470, 531, 831, 852, 885
FblI GTMKAC 1 cut(s) 933
FriOI GRGCYC 1 cut(s) 246
FspBI CTAG 4 cut(s) 54, 77, 611, 753
GsaI CCCAGC 1 cut(s) 184
HaeIII GGCC 3 cut(s) 48, 461, 866
HapII CCGG 3 cut(s) 422, 447, 649
HgaI GACGC 1 cut(s) 838
Hin1II CATG 7 cut(s) 159, 239, 474, 535, 835, 856, 889
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HpaII CCGG 3 cut(s) 422, 447, 649
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 207, 934
Hpy188I TCNGA 8 cut(s) 88, 175, 220, 262, 584, 627, 717, 841
Hpy188III TCNNGA 5 cut(s) 276, 362, 532, 664, 886
Hpy8I GTNNAC 2 cut(s) 207, 934
HpyAV CCTTC 3 cut(s) 38, 344, 902
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 827
HpyCH4V TGCA 6 cut(s) 67, 155, 288, 555, 591, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 651, 855
HpyF3I CTNAG 2 cut(s) 311, 840
HpySE526I ACGT 1 cut(s) 827
Hsp92II CATG 7 cut(s) 159, 239, 474, 535, 835, 856, 889
Kzo9I GATC 5 cut(s) 392, 579, 678, 781, 882
LmnI GCTCC 1 cut(s) 135
MaeI CTAG 4 cut(s) 54, 77, 611, 753
MaeII ACGT 1 cut(s) 827
MaeIII GTNAC 4 cut(s) 14, 56, 500, 512
MalI GATC 5 cut(s) 394, 581, 680, 783, 884
MboI GATC 5 cut(s) 392, 579, 678, 781, 882
MboII GAAGA 7 cut(s) 48, 82, 307, 331, 364, 884, 917
MfeI CAATTG 1 cut(s) 550
MflI RGATCY 1 cut(s) 392
MhlI GDGCHC 2 cut(s) 246, 656
MluCI AATT 4 cut(s) 5, 283, 550, 592
MlyI GAGTC 6 cut(s) 11, 92, 316, 494, 851, 929
MnlI CCTC 9 cut(s) 112, 528, 539, 656, 664, 753, 871, 882, 922
MseI TTAA 3 cut(s) 110, 689, 812
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 3 cut(s) 422, 447, 649
MunI CAATTG 1 cut(s) 550
MwoI GCNNNNNNNGC 2 cut(s) 651, 855
NdeII GATC 5 cut(s) 392, 579, 678, 781, 882
NlaIII CATG 7 cut(s) 159, 239, 474, 535, 835, 856, 889
NlaIV GGNNCC 2 cut(s) 131, 142
NmeAIII GCCGAG 1 cut(s) 106
NmuCI GTSAC 2 cut(s) 14, 56
PagI TCATGA 2 cut(s) 531, 885
PceI AGGCCT 1 cut(s) 48
PfeI GAWTC 6 cut(s) 73, 166, 272, 450, 658, 819
PleI GAGTC 6 cut(s) 11, 91, 315, 493, 850, 929
PpsI GAGTC 6 cut(s) 11, 91, 315, 493, 850, 929
PspFI CCCAGC 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 131, 142
PspPI GGNCC 1 cut(s) 864
PsuI RGATCY 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 138
SalI GTCGAC 1 cut(s) 932
SaqAI TTAA 3 cut(s) 110, 689, 812
Sau3AI GATC 5 cut(s) 392, 579, 678, 781, 882
Sau96I GGNCC 1 cut(s) 864
SchI GAGTC 6 cut(s) 11, 92, 316, 494, 851, 929
SduI GDGCHC 2 cut(s) 246, 656
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
SpeI ACTAGT 1 cut(s) 610
Sse9I AATT 4 cut(s) 5, 283, 550, 592
SseBI AGGCCT 1 cut(s) 48
SsiI CCGC 1 cut(s) 138
SspMI CTAG 4 cut(s) 54, 77, 611, 753
StuI AGGCCT 1 cut(s) 48
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 830
TaqI TCGA 6 cut(s) 164, 240, 275, 656, 748, 933
TasI AATT 4 cut(s) 5, 283, 550, 592
TfiI GAWTC 6 cut(s) 73, 166, 272, 450, 658, 819
Tru1I TTAA 3 cut(s) 110, 689, 812
Tru9I TTAA 3 cut(s) 110, 689, 812
TscAI CASTG 2 cut(s) 388, 571
TseFI GTSAC 2 cut(s) 14, 56
Tsp45I GTSAC 2 cut(s) 14, 56
TspDTI ATGAA 8 cut(s) 214, 224, 227, 291, 459, 811, 848, 918
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 2 cut(s) 388, 571
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 4 cut(s) 54, 77, 611, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.