Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0011044

Physical Location & Seq

Genomic Coordinates Reverse (-)

21151222 .. 21152318

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g24090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCGACAACGCTTCGGTGCCCGCAAGGAGCGGTACCGCTTCCGTGGAGGGGGAGAAGGCCCAACGGCGGCAGAGGCCCCCGCCACTGCCAGGTGCCGAACATCAAGGCGTTCCAGCGCAGCGACATAGGAAGCTTCGCGAAGGACGCGTGGCGGAGCGCCAACGACGGATTCGAGCGGTTCCTTTTTGAGGCGAAGAAGACCGCCGAGCGCCTCGACCGTCAGTACGCCCTCTCCCGCCGCTTTGACACAATCGCTCGCTCCGCCGTCGATCGCGCCAGAGAAATCGACAGAGAACTCGAGATTGGAACGCGCTGGCGCGCCTTCAGCGTGGATTTCAGCAGAAATTGGCCTAGGTACAGGAAGCAGCTTTCTGAATTCATGGAGGCCCCATTGGGAAGAAGCTTTGCGACAATTTTCTTCCTGTGGTTTGCATTATCCGGATGGCTGTTTCGGATATTGATTTTCGCTACATGGGTTCTGCCGTTTGCTGCTCCTCTTCTCATCGGAGCAGTTGCCAACAGCCTTGTTATTAAGGGCGCTTGTCCGGCATGTAAGAGGCAATTTGTTGGTTACAAGAACCAAGTAATCCGCTGTGGAAGCTGTGGAAACACCGTGTGGCAGCCAAAATCAGACTTCTTCTCAAGAGACGGTAGAGGAGGCCCTTCTTCTTCGTCAAAGTCAGAGCCGGAGATTATTGATGTTGAATTTGAGGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

27.37

Weight (kDa)

10.13

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44870
fragaria_vesca	FvH4_7g33420
malus_domestica	MD01G1232400.v1.1 MD07G1304300.v1.1
prunus_persica	Prupe.2G322900_v2.0.a1 Prupe.2G322900_v2.0.a1 Prupe.2G322900_v2.0.a1
pyrus_communis	pycom01g24090
rosa_chinensis	RchiOBHm_Chr1g0383391
rosa_laevigata	RLG00000026105
rosa_multiflora	Rmu_co8439237.1_g000001 Rmu_sc0007173.1_g000010 Rmu_sc0012471.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277330
rosa_rugosa	Rorug01G0441200
rosa_samantha	Rh1AG467000 Rh1BG424300 Rh1CG437400 Rh1DG457000
rosa_wichuraiana	Rw1G040550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	34
AccB1I	GGYRCC	3 cut(s)	18, 34, 94
AccBSI	CCGCTC	2 cut(s)	32, 178
AccII	CGCG	5 cut(s)	140, 149, 276, 313, 321
AccIII	TCCGGA	1 cut(s)	440
AcsI	RAATTY	2 cut(s)	377, 707
AcuI	CTGAAG	1 cut(s)	310
AdeI	CACNNNGTG	1 cut(s)	618
AfaI	GTAC	3 cut(s)	36, 227, 359
AfiI	CCNNNNNNNGG	4 cut(s)	50, 68, 91, 190
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	1 cut(s)	707
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	4 cut(s)	155, 187, 288, 320
AluBI	AGCT	4 cut(s)	135, 370, 405, 603
AluI	AGCT	4 cut(s)	135, 370, 405, 603
Alw26I	GTCTC	1 cut(s)	642
Ama87I	CYCGRG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	440
AoxI	GGCC	5 cut(s)	59, 76, 350, 387, 661
ApeKI	GCWGC	4 cut(s)	120, 367, 491, 622
ApoI	RAATTY	2 cut(s)	377, 707
AscI	GGCGCGCC	1 cut(s)	319
Asp718I	GGTACC	1 cut(s)	34
AspA2I	CCTAGG	1 cut(s)	353
AspLEI	GCGC	8 cut(s)	120, 161, 213, 278, 315, 321, 323, 542
AspS9I	GGNCC	4 cut(s)	60, 77, 388, 662
AvaI	CYCGRG	1 cut(s)	299
AvrII	CCTAGG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	23
BanI	GGYRCC	3 cut(s)	18, 34, 94
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	4 cut(s)	132, 379, 478, 634
BccI	CCATC	1 cut(s)	438
BceAI	ACGGC	3 cut(s)	82, 251, 469
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	642
BfaI	CTAG	1 cut(s)	354
BfoI	RGCGCY	3 cut(s)	162, 214, 543
BisI	GCNGC	6 cut(s)	70, 121, 241, 368, 492, 623
BlnI	CCTAGG	1 cut(s)	353
BlsI	GCNGC	6 cut(s)	71, 122, 242, 369, 493, 624
Bme1390I	CCNGG	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	4 cut(s)	60, 77, 388, 662
BmiI	GGNNCC	6 cut(s)	20, 36, 79, 96, 182, 390
BmrFI	CCNGG	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	628
BsaJI	CCNNGG	2 cut(s)	44, 353
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 68, 91, 190
BseAI	TCCGGA	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	44, 353
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	4 cut(s)	50, 68, 91, 190
BsePI	GCGCGC	1 cut(s)	319
BseRI	GAGGAG	2 cut(s)	486, 672
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	4 cut(s)	132, 379, 478, 634
Bsh1236I	CGCG	5 cut(s)	140, 149, 276, 313, 321
Bsh1285I	CGRYCG	2 cut(s)	220, 274
BshFI	GGCC	5 cut(s)	61, 78, 352, 389, 663
BshNI	GGYRCC	3 cut(s)	18, 34, 94
BsiEI	CGRYCG	2 cut(s)	220, 274
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	441, 548, 689
BslI	CCNNNNNNNGG	4 cut(s)	50, 68, 91, 190
BsmAI	GTCTC	1 cut(s)	642
BsmBI	CGTCTC	1 cut(s)	642
BsnI	GGCC	5 cut(s)	61, 78, 352, 389, 663
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	271
Bsp68I	TCGCGA	1 cut(s)	140
BspANI	GGCC	5 cut(s)	61, 78, 352, 389, 663
BspEI	TCCGGA	1 cut(s)	440
BspFNI	CGCG	5 cut(s)	140, 149, 276, 313, 321
BspLI	GGNNCC	6 cut(s)	20, 36, 79, 96, 182, 390
BspT107I	GGYRCC	3 cut(s)	18, 34, 94
BsrBI	CCGCTC	2 cut(s)	32, 178
BssECI	CCNNGG	2 cut(s)	44, 353
BssHII	GCGCGC	1 cut(s)	319
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	3 cut(s)	221, 616, 653
Bst6I	CTCTTC	1 cut(s)	504
BstC8I	GCNNGC	4 cut(s)	23, 259, 317, 321
BstDSI	CCRYGG	1 cut(s)	44
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	449
BstFNI	CGCG	5 cut(s)	140, 149, 276, 313, 321
BstH2I	RGCGCY	3 cut(s)	162, 214, 543
BstHHI	GCGC	8 cut(s)	120, 161, 213, 278, 315, 321, 323, 542
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	642
BstMBI	GATC	1 cut(s)	271
BstMCI	CGRYCG	2 cut(s)	220, 274
BstMWI	GCNNNNNNNGC	6 cut(s)	75, 146, 263, 327, 548, 600
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	555
BstSCI	CCNGG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	23
BstUI	CGCG	5 cut(s)	140, 149, 276, 313, 321
BstV1I	GCAGC	4 cut(s)	132, 379, 478, 634
BstV2I	GAAGAC	1 cut(s)	206
BsuRI	GGCC	5 cut(s)	61, 78, 352, 389, 663
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	449
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	85
BtuMI	TCGCGA	1 cut(s)	140
Cac8I	GCNNGC	4 cut(s)	23, 259, 317, 321
CfoI	GCGC	8 cut(s)	120, 161, 213, 278, 315, 321, 323, 542
Cfr13I	GGNCC	4 cut(s)	60, 77, 388, 662
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	3 cut(s)	35, 226, 358
CviAII	CATG	3 cut(s)	382, 474, 552
CviQI	GTAC	3 cut(s)	35, 226, 358
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraIII	CACNNNGTG	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	2 cut(s)	169, 253
Eco130I	CCWWGG	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	299
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	3 cut(s)	77, 388, 662
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	642
FaeI	CATG	3 cut(s)	385, 477, 555
FaiI	YATR	4 cut(s)	128, 383, 475, 553
FatI	CATG	3 cut(s)	381, 473, 551
FauI	CCCGC	3 cut(s)	30, 89, 245
Fnu4HI	GCNGC	6 cut(s)	70, 121, 241, 368, 492, 623
FokI	GGATG	1 cut(s)	456
Fsp4HI	GCNGC	6 cut(s)	70, 121, 241, 368, 492, 623
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	8 cut(s)	119, 160, 212, 277, 314, 320, 322, 541
GluI	GCNGC	6 cut(s)	70, 121, 241, 368, 492, 623
HaeII	RGCGCY	3 cut(s)	162, 214, 543
HaeIII	GGCC	5 cut(s)	61, 78, 352, 389, 663
HapII	CCGG	3 cut(s)	441, 548, 689
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	8 cut(s)	120, 161, 213, 278, 315, 321, 323, 542
Hin1II	CATG	3 cut(s)	385, 477, 555
Hin6I	GCGC	8 cut(s)	118, 159, 211, 276, 313, 319, 321, 540
HinP1I	GCGC	8 cut(s)	118, 159, 211, 276, 313, 319, 321, 540
HindIII	AAGCTT	2 cut(s)	133, 403
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	3 cut(s)	441, 548, 689
Hpy188I	TCNGA	5 cut(s)	376, 456, 509, 634, 685
Hpy188III	TCNNGA	4 cut(s)	139, 301, 441, 645
Hpy99I	CGWCG	2 cut(s)	170, 272
HpyAV	CCTTC	4 cut(s)	51, 136, 334, 675
HpyCH4III	ACNGT	3 cut(s)	221, 616, 653
HpyCH4V	TGCA	1 cut(s)	434
HpyF10VI	GCNNNNNNNGC	6 cut(s)	75, 146, 263, 327, 548, 600
Hsp92II	CATG	3 cut(s)	385, 477, 555
HspAI	GCGC	8 cut(s)	118, 159, 211, 276, 313, 319, 321, 540
Kpn2I	TCCGGA	1 cut(s)	440
KpnI	GGTACC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	5 cut(s)	29, 156, 266, 499, 509
Lsp1109I	GCAGC	4 cut(s)	132, 379, 478, 634
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	1 cut(s)	273
MbiI	CCGCTC	2 cut(s)	32, 178
MboI	GATC	1 cut(s)	271
MboII	GAAGA	8 cut(s)	208, 211, 411, 412, 491, 631, 660, 663
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	5 cut(s)	346, 377, 414, 563, 707
MluI	ACGCGT	1 cut(s)	147
MroI	TCCGGA	1 cut(s)	440
MseI	TTAA	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	594
MspI	CCGG	3 cut(s)	441, 548, 689
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	5 cut(s)	140, 149, 276, 313, 321
MwoI	GCNNNNNNNGC	6 cut(s)	75, 146, 263, 327, 548, 600
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	385, 477, 555
NlaIV	GGNNCC	6 cut(s)	20, 36, 79, 96, 182, 390
NmeAIII	GCCGAG	1 cut(s)	232
NruI	TCGCGA	1 cut(s)	140
NspI	RCATGY	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	299
PalAI	GGCGCGCC	1 cut(s)	319
PauI	GCGCGC	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	6 cut(s)	71, 122, 242, 369, 493, 624
Ple19I	CGATCG	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	6 cut(s)	20, 36, 79, 96, 182, 390
PspPI	GGNCC	4 cut(s)	60, 77, 388, 662
PteI	GCGCGC	1 cut(s)	319
PvuI	CGATCG	1 cut(s)	274
RruI	TCGCGA	1 cut(s)	140
RsaI	GTAC	3 cut(s)	36, 227, 359
RsaNI	GTAC	3 cut(s)	35, 226, 358
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	6 cut(s)	70, 121, 241, 368, 492, 623
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	4 cut(s)	60, 77, 388, 662
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	6 cut(s)	96, 137, 359, 372, 407, 605
Sfr274I	CTCGAG	1 cut(s)	299
SgsI	GGCGCGCC	1 cut(s)	319
SlaI	CTCGAG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	299, 643
SmoI	CTYRAG	2 cut(s)	299, 643
Sse9I	AATT	5 cut(s)	346, 377, 414, 563, 707
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	3 cut(s)	221, 616, 653
TaqI	TCGA	5 cut(s)	174, 216, 270, 288, 300
TasI	AATT	5 cut(s)	346, 377, 414, 563, 707
TauI	GCSGC	2 cut(s)	72, 243
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	92
TseI	GCWGC	4 cut(s)	120, 367, 491, 622
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	2 cut(s)	33, 183
TspRI	CASTG	1 cut(s)	92
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	2 cut(s)	377, 707
XceI	RCATGY	1 cut(s)	555
XhoI	CTCGAG	1 cut(s)	299
XmaJI	CCTAGG	1 cut(s)	353
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.