Rw1G040550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011044
Physical Location & Seq
Forward (+)
67784962 .. 67786901
1940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040550.1

Sequence Viewer

Length: 780 bp
ATGGCGACCACCAATCTCCGATGCCCTCAACTAGCGGCGGCGCCGCTTCCGCTGGGCCGGGCCAGGAGGCCCAGCAGCGGCGGAAGAGCCCGAATCCCAATCGGGGCAGCCCGCCAGGTGTCGAAAATCCAGGCCTTTCAGCGCAGCGACATCGACGGCTTCGCGAAGCGGATAGCCTCCGGCGAGGCCTGGCAGGACGCGTGGCGGTCCGCCAACGACGGATTCGAACGGTTCTTGTTCGAGGCCAAGAAAACCGCCGAGCGGTTGGACCGGCAGTACTCCGTTTCGCGGCGGCTCGATTCGCTCGCTCAGTCCGCCATGATTCGCGCGCGCGAGATTGATAGGGACTTCGAGATTGGGACTCGCTGGCGCGCTTTTTCTATGGATTTCGCCAGAAATTTGCCTAGGTACAGGAAGCAGCTTAGTGATTTCTTGGACACCCCAGTTGGGAGAAGCTTTGCGACGATTTTCTTCCTGTGGCTTGCATTATCTGGGTGGCTTTTTCGGGGTCTGATACTCGCCACATGGGTGCTGCCATTTGCTGCTCCTCTAGTTATTGGAGCTGTTGCCAATAACCTTGTTATTAAGGGGGCTTGTCCTGCTTGCAAGAGGCAATTTGTTGGATACAAGAACCAAATAATTCGATGTCAAAGCTGCGGAAACACTGTGTGGCAGCCAAAGAAAGGAGGAGGACCGGACTTCTTTAACAGAGATAGGAGAGGCTCTTCTTCATCAAAGAAAGAGCCGGAGATCATTGATGTTGAGTTTGAGGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.21

Weight (kDa)

10.4

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 262
AccII CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
AcsI RAATTY 1 cut(s) 397
AcyI GRCGYC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 669
AfaI GTAC 2 cut(s) 278, 410
AfiI CCNNNNNNNGG 6 cut(s) 77, 103, 261, 288, 447, 683
AflIII ACRYGT 1 cut(s) 198
AjnI CCWGG 4 cut(s) 62, 114, 129, 188
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AleI CACNNNNGTG 1 cut(s) 527
AluBI AGCT 4 cut(s) 421, 456, 563, 654
AluI AGCT 4 cut(s) 421, 456, 563, 654
AoxI GGCC 6 cut(s) 55, 60, 68, 132, 186, 243
ApeKI GCWGC 8 cut(s) 75, 107, 144, 418, 532, 542, 654, 673
ApoI RAATTY 1 cut(s) 397
AspA2I CCTAGG 1 cut(s) 404
AspLEI GCGC 7 cut(s) 43, 144, 329, 331, 333, 372, 374
AspS9I GGNCC 6 cut(s) 55, 60, 69, 207, 268, 692
AsuC2I CCSGG 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 225
AvaII GGWCC 3 cut(s) 207, 268, 692
AvrII CCTAGG 1 cut(s) 404
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 91
BbvI GCAGC 8 cut(s) 87, 119, 156, 430, 519, 529, 641, 685
BceAI ACGGC 1 cut(s) 172
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 4 cut(s) 64, 116, 131, 190
BciVI GTATCC 1 cut(s) 617
BcnI CCSGG 1 cut(s) 59
BfaI CTAG 3 cut(s) 32, 405, 551
BfoI RGCGCY 1 cut(s) 44
BfuI GTATCC 1 cut(s) 617
BlnI CCTAGG 1 cut(s) 404
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 5 cut(s) 59, 64, 116, 131, 190
Bme18I GGWCC 3 cut(s) 207, 268, 692
BmgT120I GGNCC 6 cut(s) 55, 60, 69, 207, 268, 692
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 5 cut(s) 59, 64, 116, 131, 190
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 1 cut(s) 11
BmuI ACTGGG 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 404
BsaWI WCCGGW 1 cut(s) 694
Bsc4I CCNNNNNNNGG 6 cut(s) 77, 103, 261, 288, 447, 683
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 443
BseBI CCWGG 4 cut(s) 64, 116, 131, 190
BseDI CCNNGG 1 cut(s) 404
BseLI CCNNNNNNNGG 6 cut(s) 77, 103, 261, 288, 447, 683
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 443
BsePI GCGCGC 3 cut(s) 327, 329, 370
BseRI GAGGAG 2 cut(s) 537, 702
BseXI GCAGC 8 cut(s) 87, 119, 156, 430, 519, 529, 641, 685
BseYI CCCAGC 2 cut(s) 52, 71
Bsh1236I CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
BshFI GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
BshNI GGYRCC 1 cut(s) 40
BsiSI CCGG 5 cut(s) 58, 180, 271, 695, 746
BslFI GGGAC 2 cut(s) 359, 373
BslI CCNNNNNNNGG 6 cut(s) 77, 103, 261, 288, 447, 683
BsmFI GGGAC 2 cut(s) 359, 373
BsnI GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 750
Bsp68I TCGCGA 1 cut(s) 164
BspANI GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
BspLI GGNNCC 1 cut(s) 42
BspQI GCTCTTC 2 cut(s) 79, 730
BspT104I TTCGAA 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 404
BssHII GCGCGC 3 cut(s) 327, 329, 370
BssMI GATC 1 cut(s) 750
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 4 cut(s) 64, 116, 131, 190
Bst4CI ACNGT 2 cut(s) 231, 667
Bst6I CTCTTC 2 cut(s) 79, 730
BstACI GRCGYC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 8 cut(s) 112, 306, 329, 331, 368, 372, 483, 604
BstDEI CTNAG 2 cut(s) 309, 422
BstFNI CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 7 cut(s) 43, 144, 329, 331, 333, 372, 374
BstKTI GATC 1 cut(s) 753
BstMBI GATC 1 cut(s) 750
BstMWI GCNNNNNNNGC 4 cut(s) 49, 301, 314, 599
BstNI CCWGG 4 cut(s) 64, 116, 131, 190
BstSCI CCNGG 5 cut(s) 57, 62, 114, 129, 188
BstUI CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
BstV1I GCAGC 8 cut(s) 87, 119, 156, 430, 519, 529, 641, 685
BsuI GTATCC 1 cut(s) 617
BsuRI GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
BtsIMutI CAGTG 1 cut(s) 663
BtuMI TCGCGA 1 cut(s) 164
Cac8I GCNNGC 8 cut(s) 112, 306, 329, 331, 368, 372, 483, 604
CfoI GCGC 7 cut(s) 43, 144, 329, 331, 333, 372, 374
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 6 cut(s) 55, 60, 69, 207, 268, 692
CpoI CGGWCCG 1 cut(s) 207
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 277, 409
CspI CGGWCCG 1 cut(s) 207
CviAII CATG 2 cut(s) 319, 525
CviQI GTAC 2 cut(s) 277, 409
DdeI CTNAG 2 cut(s) 309, 422
DinI GGCGCC 1 cut(s) 42
DpnI GATC 1 cut(s) 752
DpnII GATC 1 cut(s) 750
DraIII CACNNNGTG 1 cut(s) 669
Eam1104I CTCTTC 2 cut(s) 79, 730
EarI CTCTTC 2 cut(s) 79, 730
EciI GGCGGA 3 cut(s) 96, 199, 304
Eco130I CCWWGG 1 cut(s) 404
Eco147I AGGCCT 2 cut(s) 134, 188
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 3 cut(s) 207, 268, 692
EcoRII CCWGG 4 cut(s) 62, 114, 129, 188
EcoT14I CCWWGG 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 91
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 322, 528
FaiI YATR 3 cut(s) 320, 383, 526
FaqI GGGAC 2 cut(s) 359, 373
FatI CATG 2 cut(s) 318, 524
FauI CCCGC 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 3 cut(s) 32, 405, 551
GlaI GCGC 7 cut(s) 42, 143, 328, 330, 332, 371, 373
GsaI CCCAGC 2 cut(s) 56, 75
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 6 cut(s) 57, 62, 70, 134, 188, 245
HapII CCGG 5 cut(s) 58, 180, 271, 695, 746
HgaI GACGC 1 cut(s) 206
HhaI GCGC 7 cut(s) 43, 144, 329, 331, 333, 372, 374
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 322, 528
Hin6I GCGC 7 cut(s) 41, 142, 327, 329, 331, 370, 372
HinP1I GCGC 7 cut(s) 41, 142, 327, 329, 331, 370, 372
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 5 cut(s) 93, 222, 299, 322, 361
HpaII CCGG 5 cut(s) 58, 180, 271, 695, 746
Hpy188I TCNGA 2 cut(s) 20, 513
Hpy188III TCNNGA 2 cut(s) 163, 352
Hpy99I CGWCG 3 cut(s) 158, 221, 466
HpyCH4III ACNGT 2 cut(s) 231, 667
HpyCH4V TGCA 2 cut(s) 485, 606
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 301, 314, 599
HpyF3I CTNAG 2 cut(s) 309, 422
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 322, 528
HspAI GCGC 7 cut(s) 41, 142, 327, 329, 331, 370, 372
KasI GGCGCC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 750
LguI GCTCTTC 2 cut(s) 79, 730
LmnI GCTCC 2 cut(s) 550, 560
Lsp1109I GCAGC 8 cut(s) 87, 119, 156, 430, 519, 529, 641, 685
LweI GCATC 1 cut(s) 11
MaeI CTAG 3 cut(s) 32, 405, 551
MalI GATC 1 cut(s) 752
MauBI CGCGCGCG 2 cut(s) 327, 329
MbiI CCGCTC 1 cut(s) 262
MboI GATC 1 cut(s) 750
MboII GAAGA 4 cut(s) 96, 463, 717, 720
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 3 cut(s) 397, 614, 639
MluI ACGCGT 1 cut(s) 198
Mly113I GGCGCC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 2 cut(s) 246, 601
MseI TTAA 2 cut(s) 585, 705
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 2 cut(s) 52, 78
MspI CCGG 5 cut(s) 58, 180, 271, 695, 746
MspR9I CCNGG 5 cut(s) 59, 64, 116, 131, 190
MvaI CCWGG 4 cut(s) 64, 116, 131, 190
MvnI CGCG 8 cut(s) 164, 200, 289, 327, 329, 331, 333, 372
MwoI GCNNNNNNNGC 4 cut(s) 49, 301, 314, 599
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 1 cut(s) 59
NdeII GATC 1 cut(s) 750
NlaIII CATG 2 cut(s) 322, 528
NlaIV GGNNCC 1 cut(s) 42
NmeAIII GCCGAG 1 cut(s) 283
NruI TCGCGA 1 cut(s) 164
NspV TTCGAA 1 cut(s) 225
OliI CACNNNNGTG 1 cut(s) 527
PauI GCGCGC 3 cut(s) 327, 329, 370
PceI AGGCCT 2 cut(s) 134, 188
PciSI GCTCTTC 2 cut(s) 79, 730
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 4 cut(s) 93, 222, 299, 322
PleI GAGTC 1 cut(s) 355
PluTI GGCGCC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 355
Psp6I CCWGG 4 cut(s) 62, 114, 129, 188
PspFI CCCAGC 2 cut(s) 52, 71
PspGI CCWGG 4 cut(s) 62, 114, 129, 188
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 6 cut(s) 55, 60, 69, 207, 268, 692
PteI GCGCGC 3 cut(s) 327, 329, 370
RruI TCGCGA 1 cut(s) 164
RsaI GTAC 2 cut(s) 278, 410
RsaNI GTAC 2 cut(s) 277, 409
RseI CAYNNNNRTG 1 cut(s) 527
Rsr2I CGGWCCG 1 cut(s) 207
RsrII CGGWCCG 1 cut(s) 207
SapI GCTCTTC 2 cut(s) 79, 730
SaqAI TTAA 2 cut(s) 585, 705
Sau3AI GATC 1 cut(s) 750
Sau96I GGNCC 6 cut(s) 55, 60, 69, 207, 268, 692
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 5 cut(s) 59, 64, 116, 131, 190
SduI GDGCHC 1 cut(s) 91
SetI ASST 7 cut(s) 120, 410, 423, 458, 565, 579, 656
SfaNI GCATC 1 cut(s) 11
SfoI GGCGCC 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 225
SinI GGWCC 3 cut(s) 207, 268, 692
SmiMI CAYNNNNRTG 1 cut(s) 527
Sse9I AATT 3 cut(s) 397, 614, 639
SseBI AGGCCT 2 cut(s) 134, 188
SspDI GGCGCC 1 cut(s) 40
SspMI CTAG 3 cut(s) 32, 405, 551
StuI AGGCCT 2 cut(s) 134, 188
StyD4I CCNGG 5 cut(s) 57, 62, 114, 129, 188
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 2 cut(s) 231, 667
TaqI TCGA 7 cut(s) 122, 153, 225, 240, 297, 351, 643
TasI AATT 3 cut(s) 397, 614, 639
TatI WGTACW 1 cut(s) 276
TauI GCSGC 6 cut(s) 38, 41, 46, 81, 292, 295
TfiI GAWTC 4 cut(s) 93, 222, 299, 322
Tru1I TTAA 2 cut(s) 585, 705
Tru9I TTAA 2 cut(s) 585, 705
TscAI CASTG 1 cut(s) 670
TseI GCWGC 8 cut(s) 75, 107, 144, 418, 532, 542, 654, 673
TspDTI ATGAA 1 cut(s) 720
TspGWI ACGGA 2 cut(s) 234, 271
TspRI CASTG 1 cut(s) 670
VpaK11BI GGWCC 3 cut(s) 207, 268, 692
XapI RAATTY 1 cut(s) 397
XmaJI CCTAGG 1 cut(s) 404
XspI CTAG 3 cut(s) 32, 405, 551
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.