Rh1AG467000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0011044
Physical Location & Seq
Reverse (-)
68138392 .. 68141761
3370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG467000.1

Sequence Viewer

Length: 771 bp
ATGGCGACCACCAATCTCCGATGCCCTCAACTAGCGGCGGCGCCGCTTCCGCTGGGCCGGGCCAGCAGCGGCGGAAGAGCCCGAATCCCAATCGGGGCAGCCCGCCAGGTGTCGAAAATCCAGGCCTTTCAGCGCAGCGACATCGACGGCTTCGCGAAGCGGATAGCCTCCGGCGAGGCCTGGCAGGACGCGTGGCGGTCCGCCAACGACGGATTCGAACGGTTCTTGTTCGAGGCCAAGAAAACCGCCGAGCGGTTGGACCGGCAGTACTCCGTTTCGCGGCGGCTCGATTCGCTCGCTCAGTCCGCCATGATTCGCGCGCGCGAGATTGATAGGGACTTCGAGATTGGGACCCGCTGGCGCGCTTTTTCTATGGATTTCGCCAGAAATTTGCCGAGGTACAGGAAGCAGCTTAGTGATTTCTTGGACACCCCAGTTGGGAGAAGCTTTGCGACGATTTTCTTCCTGTGGCTTGCATTATCTGGGTGGCTTTTTCGGGGTCTGATATTAGCTACATGGGTGCTGCCATTTGCTGCTCCTCTAGTCATTGGAGCTGTTGCCAATAACCTTGTTATTAAGGGGGCTTGTCCTGCTTGCAAGAGGCAATTTGTTGGTTACAAGAACCAAATAATTCGATGTCAAAGCTGCGGAAACACTGTGTGGCAGCCAAAGAAAGGAGGAGGACCGGACTTCTTTAACAGAGATAGGAGAGGCTCTTCTTCGTCAAAGAAAGAGCCGGAGATCATTGATGTTGAGTTTGAGGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.8

Weight (kDa)

10.2

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 253
AccII CGCG 8 cut(s) 155, 191, 280, 318, 320, 322, 324, 363
AcsI RAATTY 1 cut(s) 388
AcyI GRCGYC 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 660
AfaI GTAC 2 cut(s) 269, 401
AfiI CCNNNNNNNGG 5 cut(s) 94, 252, 279, 438, 674
AflIII ACRYGT 1 cut(s) 189
AjnI CCWGG 3 cut(s) 105, 120, 179
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 5 cut(s) 412, 447, 512, 554, 645
AluI AGCT 5 cut(s) 412, 447, 512, 554, 645
AoxI GGCC 5 cut(s) 55, 60, 123, 177, 234
ApeKI GCWGC 8 cut(s) 66, 98, 135, 409, 523, 533, 645, 664
ApoI RAATTY 1 cut(s) 388
AspLEI GCGC 7 cut(s) 43, 135, 320, 322, 324, 363, 365
AspS9I GGNCC 6 cut(s) 55, 60, 198, 259, 351, 683
AsuC2I CCSGG 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 216
AvaII GGWCC 4 cut(s) 198, 259, 351, 683
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 82
BbvI GCAGC 8 cut(s) 78, 110, 147, 421, 510, 520, 632, 676
BceAI ACGGC 1 cut(s) 163
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 3 cut(s) 107, 122, 181
BcnI CCSGG 1 cut(s) 59
BfaI CTAG 2 cut(s) 32, 542
BfoI RGCGCY 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 4 cut(s) 59, 107, 122, 181
Bme18I GGWCC 4 cut(s) 198, 259, 351, 683
BmgT120I GGNCC 6 cut(s) 55, 60, 198, 259, 351, 683
BmiI GGNNCC 3 cut(s) 42, 352, 353
BmrFI CCNGG 4 cut(s) 59, 107, 122, 181
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 11
BmuI ACTGGG 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 395
BsaWI WCCGGW 1 cut(s) 685
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 252, 279, 438, 674
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 434
BseBI CCWGG 3 cut(s) 107, 122, 181
BseDI CCNNGG 1 cut(s) 395
BseLI CCNNNNNNNGG 5 cut(s) 94, 252, 279, 438, 674
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 434
BsePI GCGCGC 3 cut(s) 318, 320, 361
BseRI GAGGAG 2 cut(s) 528, 693
BseXI GCAGC 8 cut(s) 78, 110, 147, 421, 510, 520, 632, 676
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 8 cut(s) 155, 191, 280, 318, 320, 322, 324, 363
BshFI GGCC 5 cut(s) 57, 62, 125, 179, 236
BshNI GGYRCC 1 cut(s) 40
BsiSI CCGG 5 cut(s) 58, 171, 262, 686, 737
BslFI GGGAC 2 cut(s) 350, 364
BslI CCNNNNNNNGG 5 cut(s) 94, 252, 279, 438, 674
BsmFI GGGAC 2 cut(s) 350, 364
BsnI GGCC 5 cut(s) 57, 62, 125, 179, 236
Bsp119I TTCGAA 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 741
Bsp68I TCGCGA 1 cut(s) 155
BspANI GGCC 5 cut(s) 57, 62, 125, 179, 236
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 8 cut(s) 155, 191, 280, 318, 320, 322, 324, 363
BspLI GGNNCC 3 cut(s) 42, 352, 353
BspQI GCTCTTC 2 cut(s) 70, 721
BspT104I TTCGAA 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 40
BsrBI CCGCTC 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 395
BssHII GCGCGC 3 cut(s) 318, 320, 361
BssMI GATC 1 cut(s) 741
BssNI GRCGYC 1 cut(s) 41
Bst2UI CCWGG 3 cut(s) 107, 122, 181
Bst4CI ACNGT 2 cut(s) 222, 658
Bst6I CTCTTC 2 cut(s) 70, 721
BstACI GRCGYC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 9 cut(s) 64, 103, 297, 320, 322, 359, 363, 474, 595
BstDEI CTNAG 2 cut(s) 300, 413
BstFNI CGCG 8 cut(s) 155, 191, 280, 318, 320, 322, 324, 363
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 7 cut(s) 43, 135, 320, 322, 324, 363, 365
BstKTI GATC 1 cut(s) 744
BstMBI GATC 1 cut(s) 741
BstMWI GCNNNNNNNGC 5 cut(s) 49, 63, 292, 305, 590
BstNI CCWGG 3 cut(s) 107, 122, 181
BstSCI CCNGG 4 cut(s) 57, 105, 120, 179
BstUI CGCG 8 cut(s) 155, 191, 280, 318, 320, 322, 324, 363
BstV1I GCAGC 8 cut(s) 78, 110, 147, 421, 510, 520, 632, 676
BsuRI GGCC 5 cut(s) 57, 62, 125, 179, 236
BtsIMutI CAGTG 1 cut(s) 654
BtuMI TCGCGA 1 cut(s) 155
Cac8I GCNNGC 9 cut(s) 64, 103, 297, 320, 322, 359, 363, 474, 595
CfoI GCGC 7 cut(s) 43, 135, 320, 322, 324, 363, 365
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 6 cut(s) 55, 60, 198, 259, 351, 683
CpoI CGGWCCG 1 cut(s) 198
CseI GACGC 1 cut(s) 197
Csp6I GTAC 2 cut(s) 268, 400
CspI CGGWCCG 1 cut(s) 198
CviAII CATG 2 cut(s) 310, 516
CviQI GTAC 2 cut(s) 268, 400
DdeI CTNAG 2 cut(s) 300, 413
DinI GGCGCC 1 cut(s) 42
DpnI GATC 1 cut(s) 743
DpnII GATC 1 cut(s) 741
DraIII CACNNNGTG 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 70, 721
EarI CTCTTC 2 cut(s) 70, 721
EciI GGCGGA 3 cut(s) 87, 190, 295
Eco147I AGGCCT 2 cut(s) 125, 179
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 4 cut(s) 198, 259, 351, 683
EcoO109I RGGNCCY 1 cut(s) 351
EcoRII CCWGG 3 cut(s) 105, 120, 179
EcoT38I GRGCYC 1 cut(s) 82
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
FaeI CATG 2 cut(s) 313, 519
FaiI YATR 3 cut(s) 311, 374, 517
FaqI GGGAC 2 cut(s) 350, 364
FatI CATG 2 cut(s) 309, 515
FauI CCCGC 2 cut(s) 110, 362
FriOI GRGCYC 1 cut(s) 82
FspBI CTAG 2 cut(s) 32, 542
GlaI GCGC 7 cut(s) 42, 134, 319, 321, 323, 362, 364
GsaI CCCAGC 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 5 cut(s) 57, 62, 125, 179, 236
HapII CCGG 5 cut(s) 58, 171, 262, 686, 737
HgaI GACGC 1 cut(s) 197
HhaI GCGC 7 cut(s) 43, 135, 320, 322, 324, 363, 365
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 313, 519
Hin6I GCGC 7 cut(s) 41, 133, 318, 320, 322, 361, 363
HinP1I GCGC 7 cut(s) 41, 133, 318, 320, 322, 361, 363
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 4 cut(s) 84, 213, 290, 313
HpaII CCGG 5 cut(s) 58, 171, 262, 686, 737
Hpy188I TCNGA 2 cut(s) 20, 504
Hpy188III TCNNGA 2 cut(s) 154, 343
Hpy99I CGWCG 3 cut(s) 149, 212, 457
HpyCH4III ACNGT 2 cut(s) 222, 658
HpyCH4V TGCA 2 cut(s) 476, 597
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 63, 292, 305, 590
HpyF3I CTNAG 2 cut(s) 300, 413
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 313, 519
HspAI GCGC 7 cut(s) 41, 133, 318, 320, 322, 361, 363
KasI GGCGCC 1 cut(s) 40
KflI GGGWCCC 1 cut(s) 351
Kzo9I GATC 1 cut(s) 741
LguI GCTCTTC 2 cut(s) 70, 721
LmnI GCTCC 2 cut(s) 541, 551
Lsp1109I GCAGC 8 cut(s) 78, 110, 147, 421, 510, 520, 632, 676
LweI GCATC 1 cut(s) 11
MaeI CTAG 2 cut(s) 32, 542
MaeIII GTNAC 1 cut(s) 614
MalI GATC 1 cut(s) 743
MauBI CGCGCGCG 2 cut(s) 318, 320
MbiI CCGCTC 1 cut(s) 253
MboI GATC 1 cut(s) 741
MboII GAAGA 4 cut(s) 87, 454, 708, 711
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 3 cut(s) 388, 605, 630
MluI ACGCGT 1 cut(s) 189
Mly113I GGCGCC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 237
MseI TTAA 2 cut(s) 576, 696
MspA1I CMGCKG 3 cut(s) 52, 69, 357
MspI CCGG 5 cut(s) 58, 171, 262, 686, 737
MspR9I CCNGG 4 cut(s) 59, 107, 122, 181
MvaI CCWGG 3 cut(s) 107, 122, 181
MvnI CGCG 8 cut(s) 155, 191, 280, 318, 320, 322, 324, 363
MwoI GCNNNNNNNGC 5 cut(s) 49, 63, 292, 305, 590
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 1 cut(s) 59
NdeII GATC 1 cut(s) 741
NlaIII CATG 2 cut(s) 313, 519
NlaIV GGNNCC 3 cut(s) 42, 352, 353
NmeAIII GCCGAG 2 cut(s) 274, 420
NruI TCGCGA 1 cut(s) 155
NspV TTCGAA 1 cut(s) 216
PauI GCGCGC 3 cut(s) 318, 320, 361
PceI AGGCCT 2 cut(s) 125, 179
PciSI GCTCTTC 2 cut(s) 70, 721
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 4 cut(s) 84, 213, 290, 313
PluTI GGCGCC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 351
Psp6I CCWGG 3 cut(s) 105, 120, 179
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 3 cut(s) 105, 120, 179
PspN4I GGNNCC 3 cut(s) 42, 352, 353
PspPI GGNCC 6 cut(s) 55, 60, 198, 259, 351, 683
PspPPI RGGWCCY 1 cut(s) 351
PteI GCGCGC 3 cut(s) 318, 320, 361
RruI TCGCGA 1 cut(s) 155
RsaI GTAC 2 cut(s) 269, 401
RsaNI GTAC 2 cut(s) 268, 400
Rsr2I CGGWCCG 1 cut(s) 198
RsrII CGGWCCG 1 cut(s) 198
SapI GCTCTTC 2 cut(s) 70, 721
SaqAI TTAA 2 cut(s) 576, 696
Sau3AI GATC 1 cut(s) 741
Sau96I GGNCC 6 cut(s) 55, 60, 198, 259, 351, 683
ScaI AGTACT 1 cut(s) 269
ScrFI CCNGG 4 cut(s) 59, 107, 122, 181
SduI GDGCHC 1 cut(s) 82
SetI ASST 8 cut(s) 111, 401, 414, 449, 514, 556, 570, 647
SfaNI GCATC 1 cut(s) 11
SfoI GGCGCC 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 216
SinI GGWCC 4 cut(s) 198, 259, 351, 683
Sse9I AATT 3 cut(s) 388, 605, 630
SseBI AGGCCT 2 cut(s) 125, 179
SspDI GGCGCC 1 cut(s) 40
SspMI CTAG 2 cut(s) 32, 542
StuI AGGCCT 2 cut(s) 125, 179
StyD4I CCNGG 4 cut(s) 57, 105, 120, 179
TaaI ACNGT 2 cut(s) 222, 658
TaqI TCGA 7 cut(s) 113, 144, 216, 231, 288, 342, 634
TasI AATT 3 cut(s) 388, 605, 630
TatI WGTACW 1 cut(s) 267
TauI GCSGC 6 cut(s) 38, 41, 46, 72, 283, 286
TfiI GAWTC 4 cut(s) 84, 213, 290, 313
Tru1I TTAA 2 cut(s) 576, 696
Tru9I TTAA 2 cut(s) 576, 696
TscAI CASTG 1 cut(s) 661
TseI GCWGC 8 cut(s) 66, 98, 135, 409, 523, 533, 645, 664
TspGWI ACGGA 2 cut(s) 225, 262
TspRI CASTG 1 cut(s) 661
VpaK11BI GGWCC 4 cut(s) 198, 259, 351, 683
XapI RAATTY 1 cut(s) 388
XspI CTAG 2 cut(s) 32, 542
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.