Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011044

Physical Location & Seq

Genomic Coordinates Reverse (-)

23787019 .. 23788853

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGACCACGAATCTCCGATGCCCGCAACTAGCGGCGCCGGTTCAGCTGGGCCGGGCCAGGAGGAGGCCCAGCAGCCTAATCCCAGTCGGGGCGCGCCAGGTGTCTAAAATCCAGGCCTTTCAGCGCAGCGACATTGACGGGTTCGCGAAGCGGATAGCCTCCGGCGAGGCGTGGCAGGACGCGTGGCGGTCCGCGAACGACGGATTCGAGCGGTTCTTGTTTGAGGCGAAGAAGACGGCCGAGCGGTTGGACAGGCAGTACTCGGTTTCGCGGCGGTTCGATTCGCTCGCTCAGTCCGCCGTGATTCGCGCGCGCGAGATTGATAGGGAGCTCGAGATTGGGACACGCTGGCGCGCGTTCTCTATGGATTTCGCCAGAAACTTGCCTAGGTACAGGAAGCAGGTTAGTGATTTCTTGGACACCCCAGTTGGGAGAAGCTTTGTGACAATATTCTTCCTGTGGCTTGCATTATCTGGATGGCTATTTCGGGTACTGATAATCGCTACATGGGTGCTGCCATTTGCTGCTCCTCTTGTTATTGGAGCTGTTGCCAATAACCTTGTGATTAAGGGGGCTTGTCCTGCTTGCAAGAGGCAATTTGTTGGTTACAAGAACCAAATAATTCGATGTCAAAGCTGCGGAAACACTGTGTGGCAGCCGAAGAAAGGAGGAGGACCAGACTTCTTTAACAGGGATAGGGGAGGCTCTTCAAAGAAAGAGCCGGAGATTATTGATGTGGAGTTTGAGGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.61

Weight (kDa)

10.2

Isoelectric Point (pI)

51.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44870
fragaria_vesca	FvH4_7g33420
malus_domestica	MD01G1232400.v1.1 MD07G1304300.v1.1
prunus_persica	Prupe.2G322900_v2.0.a1 Prupe.2G322900_v2.0.a1 Prupe.2G322900_v2.0.a1
pyrus_communis	pycom01g24090
rosa_chinensis	RchiOBHm_Chr1g0383391
rosa_laevigata	RLG00000026105
rosa_multiflora	Rmu_co8439237.1_g000001 Rmu_sc0007173.1_g000010 Rmu_sc0012471.1_g000027
rosa_roxburghii	Rroxscaffold_4G00277330
rosa_rugosa	Rorug01G0441200
rosa_samantha	Rh1AG467000 Rh1BG424300 Rh1CG437400 Rh1DG457000
rosa_wichuraiana	Rw1G040550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	37
AccBSI	CCGCTC	2 cut(s)	214, 247
AcoI	YGGCCR	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	38
AdeI	CACNNNGTG	1 cut(s)	654
AfaI	GTAC	3 cut(s)	263, 395, 495
AfiI	CCNNNNNNNGG	4 cut(s)	66, 91, 432, 668
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	714
AjnI	CCWGG	3 cut(s)	59, 99, 114
AluBI	AGCT	5 cut(s)	49, 334, 441, 548, 639
AluI	AGCT	5 cut(s)	49, 334, 441, 548, 639
Alw21I	GWGCWC	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	5 cut(s)	52, 57, 68, 117, 240
ApeKI	GCWGC	6 cut(s)	75, 129, 517, 527, 639, 658
AscI	GGCGCGCC	1 cut(s)	95
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	9 cut(s)	40, 97, 99, 129, 314, 316, 318, 357, 359
AspS9I	GGNCC	5 cut(s)	52, 57, 69, 192, 677
AsuC2I	CCSGG	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	2 cut(s)	192, 677
AvrII	CCTAGG	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	6 cut(s)	87, 141, 504, 514, 626, 670
BccI	CCATC	1 cut(s)	474
BceAI	ACGGC	2 cut(s)	255, 287
BciT130I	CCWGG	3 cut(s)	61, 101, 116
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	2 cut(s)	32, 390
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	8 cut(s)	36, 76, 130, 275, 518, 528, 640, 659
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	8 cut(s)	37, 77, 131, 276, 519, 529, 641, 660
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	4 cut(s)	56, 61, 101, 116
Bme18I	GGWCC	2 cut(s)	192, 677
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	5 cut(s)	52, 57, 69, 192, 677
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	4 cut(s)	56, 61, 101, 116
BmrI	ACTGGG	2 cut(s)	80, 422
BmsI	GCATC	1 cut(s)	11
BmuI	ACTGGG	2 cut(s)	80, 422
BpiI	GAAGAC	1 cut(s)	242
BpuMI	CCSGG	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 91, 432, 668
Bse118I	RCCGGY	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	86, 428
BseBI	CCWGG	3 cut(s)	61, 101, 116
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	1 cut(s)	485
BseLI	CCNNNNNNNGG	4 cut(s)	66, 91, 432, 668
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	86, 428
BsePI	GCGCGC	4 cut(s)	95, 312, 314, 355
BseRI	GAGGAG	3 cut(s)	79, 522, 687
BseX3I	CGGCCG	1 cut(s)	240
BseXI	GCAGC	6 cut(s)	87, 141, 504, 514, 626, 670
BseYI	CCCAGC	2 cut(s)	49, 71
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	5 cut(s)	54, 59, 70, 119, 242
BshNI	GGYRCC	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	4 cut(s)	41, 55, 165, 725
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	4 cut(s)	66, 91, 432, 668
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	5 cut(s)	54, 59, 70, 119, 242
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp68I	TCGCGA	1 cut(s)	149
BspANI	GGCC	5 cut(s)	54, 59, 70, 119, 242
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	394
BspQI	GCTCTTC	1 cut(s)	715
BspT107I	GGYRCC	1 cut(s)	37
BsrBI	CCGCTC	2 cut(s)	214, 247
BsrFI	RCCGGY	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	86, 428
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	389
BssHII	GCGCGC	4 cut(s)	95, 312, 314, 355
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	389
Bst2UI	CCWGG	3 cut(s)	61, 101, 116
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	1 cut(s)	715
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	9 cut(s)	26, 97, 291, 314, 316, 353, 357, 468, 589
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	485
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	9 cut(s)	40, 97, 99, 129, 314, 316, 318, 357, 359
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 299, 584
BstNI	CCWGG	3 cut(s)	61, 101, 116
BstSCI	CCNGG	4 cut(s)	54, 59, 99, 114
BstV1I	GCAGC	6 cut(s)	87, 141, 504, 514, 626, 670
BstV2I	GAAGAC	1 cut(s)	242
BstZI	CGGCCG	1 cut(s)	240
BsuRI	GGCC	5 cut(s)	54, 59, 70, 119, 242
BtsCI	GGATG	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	648
BtuMI	TCGCGA	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	9 cut(s)	26, 97, 291, 314, 316, 353, 357, 468, 589
CfoI	GCGC	9 cut(s)	40, 97, 99, 129, 314, 316, 318, 357, 359
Cfr10I	RCCGGY	1 cut(s)	40
Cfr13I	GGNCC	5 cut(s)	52, 57, 69, 192, 677
CpoI	CGGWCCG	1 cut(s)	192
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	262, 394, 494
CspI	CGGWCCG	1 cut(s)	192
CviAII	CATG	1 cut(s)	510
CviQI	GTAC	3 cut(s)	262, 394, 494
DdeI	CTNAG	1 cut(s)	294
DinI	GGCGCC	1 cut(s)	39
DraIII	CACNNNGTG	1 cut(s)	654
EaeI	YGGCCR	1 cut(s)	240
EagI	CGGCCG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	715
EarI	CTCTTC	1 cut(s)	715
EciI	GGCGGA	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	334
EclXI	CGGCCG	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	389
Eco147I	AGGCCT	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	192, 677
Eco52I	CGGCCG	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	334
EcoRII	CCWGG	3 cut(s)	59, 99, 114
EcoT14I	CCWWGG	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	336
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	1 cut(s)	513
FaiI	YATR	2 cut(s)	368, 511
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	1 cut(s)	509
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	8 cut(s)	36, 76, 130, 275, 518, 528, 640, 659
FokI	GGATG	1 cut(s)	492
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	8 cut(s)	36, 76, 130, 275, 518, 528, 640, 659
FspBI	CTAG	2 cut(s)	32, 390
GlaI	GCGC	9 cut(s)	39, 96, 98, 128, 313, 315, 317, 356, 358
GluI	GCNGC	8 cut(s)	36, 76, 130, 275, 518, 528, 640, 659
GsaI	CCCAGC	2 cut(s)	53, 75
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	5 cut(s)	54, 59, 70, 119, 242
HapII	CCGG	4 cut(s)	41, 55, 165, 725
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	9 cut(s)	40, 97, 99, 129, 314, 316, 318, 357, 359
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	513
Hin6I	GCGC	9 cut(s)	38, 95, 97, 127, 312, 314, 316, 355, 357
HinP1I	GCGC	9 cut(s)	38, 95, 97, 127, 312, 314, 316, 355, 357
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	4 cut(s)	13, 207, 284, 307
HpaII	CCGG	4 cut(s)	41, 55, 165, 725
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	3 cut(s)	148, 337, 477
Hpy99I	CGWCG	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4V	TGCA	2 cut(s)	470, 591
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 299, 584
HpyF3I	CTNAG	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	513
HspAI	GCGC	9 cut(s)	38, 95, 97, 127, 312, 314, 316, 355, 357
KasI	GGCGCC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	715
LmnI	GCTCC	3 cut(s)	331, 535, 545
Lsp1109I	GCAGC	6 cut(s)	87, 141, 504, 514, 626, 670
LweI	GCATC	1 cut(s)	11
MaeI	CTAG	2 cut(s)	32, 390
MaeIII	GTNAC	2 cut(s)	445, 608
MauBI	CGCGCGCG	2 cut(s)	312, 314
MbiI	CCGCTC	2 cut(s)	214, 247
MboII	GAAGA	5 cut(s)	244, 247, 448, 676, 702
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	2 cut(s)	599, 624
MluI	ACGCGT	1 cut(s)	183
Mly113I	GGCGCC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	231
MseI	TTAA	2 cut(s)	570, 690
MspA1I	CMGCKG	1 cut(s)	49
MspI	CCGG	4 cut(s)	41, 55, 165, 725
MspR9I	CCNGG	4 cut(s)	56, 61, 101, 116
MvaI	CCWGG	3 cut(s)	61, 101, 116
MwoI	GCNNNNNNNGC	3 cut(s)	46, 299, 584
NarI	GGCGCC	1 cut(s)	38
NciI	CCSGG	1 cut(s)	56
NlaIII	CATG	1 cut(s)	513
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	445
NruI	TCGCGA	1 cut(s)	149
PaeR7I	CTCGAG	1 cut(s)	335
PalAI	GGCGCGCC	1 cut(s)	95
PauI	GCGCGC	4 cut(s)	95, 312, 314, 355
PceI	AGGCCT	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	715
PcsI	WCGNNNNNNNCGW	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	13, 207, 284, 307
PkrI	GCNGC	8 cut(s)	37, 77, 131, 276, 519, 529, 641, 660
PluTI	GGCGCC	1 cut(s)	41
Psp124BI	GAGCTC	1 cut(s)	336
Psp6I	CCWGG	3 cut(s)	59, 99, 114
PspFI	CCCAGC	2 cut(s)	49, 71
PspGI	CCWGG	3 cut(s)	59, 99, 114
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	5 cut(s)	52, 57, 69, 192, 677
PteI	GCGCGC	4 cut(s)	95, 312, 314, 355
PvuII	CAGCTG	1 cut(s)	49
RruI	TCGCGA	1 cut(s)	149
RsaI	GTAC	3 cut(s)	263, 395, 495
RsaNI	GTAC	3 cut(s)	262, 394, 494
Rsr2I	CGGWCCG	1 cut(s)	192
RsrII	CGGWCCG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	715
SaqAI	TTAA	2 cut(s)	570, 690
SatI	GCNGC	8 cut(s)	36, 76, 130, 275, 518, 528, 640, 659
Sau96I	GGNCC	5 cut(s)	52, 57, 69, 192, 677
ScaI	AGTACT	1 cut(s)	263
ScrFI	CCNGG	4 cut(s)	56, 61, 101, 116
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	9 cut(s)	51, 105, 336, 395, 408, 443, 550, 564, 641
SfaNI	GCATC	1 cut(s)	11
SfoI	GGCGCC	1 cut(s)	39
Sfr274I	CTCGAG	1 cut(s)	335
SgsI	GGCGCGCC	1 cut(s)	95
SinI	GGWCC	2 cut(s)	192, 677
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	599, 624
SseBI	AGGCCT	1 cut(s)	119
SspDI	GGCGCC	1 cut(s)	37
SspI	AATATT	1 cut(s)	453
SspMI	CTAG	2 cut(s)	32, 390
SstI	GAGCTC	1 cut(s)	336
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	4 cut(s)	54, 59, 99, 114
StyI	CCWWGG	1 cut(s)	389
TaaI	ACNGT	1 cut(s)	652
TaqI	TCGA	4 cut(s)	210, 282, 336, 628
TasI	AATT	2 cut(s)	599, 624
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	2 cut(s)	38, 277
TfiI	GAWTC	4 cut(s)	13, 207, 284, 307
Tru1I	TTAA	2 cut(s)	570, 690
Tru9I	TTAA	2 cut(s)	570, 690
TscAI	CASTG	1 cut(s)	655
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	6 cut(s)	75, 129, 517, 527, 639, 658
Tsp45I	GTSAC	1 cut(s)	445
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	655
VpaK11BI	GGWCC	2 cut(s)	192, 677
XhoI	CTCGAG	1 cut(s)	335
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	2 cut(s)	32, 390
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.