AT2G44925

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009136
Physical Location & Seq
Forward (+)
18527251 .. 18528295
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44925.1

Sequence Viewer

Length: 354 bp
ATGAGTACTTCGGCGGGATTTGTGCTCAATGCTAATGCGCTTGCGTATAATCCAAATCCGGACTTACGTTCTCTGTTTGTCACCTTCTCCAACGGGTTTCCTCTCACAGAATACCAAATCTTCTGTTACTTCAACTGGATGTACCCGGGGAGTGTGATGGAGGTGTTTGTGCACAAGCCTACGCCAACAGCGAAGGTTGCTGGGCAAGGCTTGTTCGGGAAGGTGATGTTCAATTCTCCTTTCATACCAGATTTCGTGCTGGGGCCTTATGAAAAGGTTTGCTTTTCTGTCTACGGACGTCCCATGTACTGCAGGAGGTTTGTTAGTCAGAGACCAAGAAACGCCAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.25

Weight (kDa)

9.33

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 291
AccIII TCCGGA 1 cut(s) 58
AciI CCGC 1 cut(s) 14
AcyI GRCGYC 1 cut(s) 298
AfaI GTAC 3 cut(s) 7, 143, 308
AgsI TTSAA 2 cut(s) 133, 232
Alw21I GWGCWC 2 cut(s) 27, 174
Alw26I GTCTC 1 cut(s) 325
Alw44I GTGCAC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 145
Aor13HI TCCGGA 1 cut(s) 58
AoxI GGCC 1 cut(s) 263
ApaLI GTGCAC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 2 cut(s) 146, 147
AsuHPI GGTGA 2 cut(s) 73, 235
AvaI CYCGRG 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 27, 174
BccI CCATC 1 cut(s) 151
BcnI CCSGG 2 cut(s) 146, 147
BcoDI GTCTC 1 cut(s) 325
BfmI CTRYAG 1 cut(s) 310
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 146, 147
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 2 cut(s) 146, 147
BpuMI CCSGG 2 cut(s) 146, 147
BsaHI GRCGYC 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 145, 146
BsaWI WCCGGW 1 cut(s) 58
Bse1I ACTGG 1 cut(s) 140
BseAI TCCGGA 1 cut(s) 58
BseDI CCNNGG 2 cut(s) 145, 146
BseGI GGATG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 174
BseYI CCCAGC 2 cut(s) 200, 259
BshFI GGCC 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 27, 174
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 2 cut(s) 59, 146
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 1 cut(s) 265
Bso31I GGTCTC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 27, 174
Bsp13I TCCGGA 1 cut(s) 58
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 265
BspEI TCCGGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 325
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 145, 146
BssNI GRCGYC 1 cut(s) 298
BstACI GRCGYC 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 42
BstF5I GGATG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 325
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 144, 145
BstSFI CTRYAG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 263
Cfr9I CCCGGG 1 cut(s) 145
Csp6I GTAC 3 cut(s) 6, 142, 307
CviAII CATG 1 cut(s) 304
CviJI RGCY 3 cut(s) 178, 210, 265
CviKI_1 RGCY 3 cut(s) 178, 210, 265
CviQI GTAC 3 cut(s) 6, 142, 307
Eco31I GGTCTC 1 cut(s) 325
Eco88I CYCGRG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 263
FaeI CATG 1 cut(s) 307
FaiI YATR 4 cut(s) 48, 245, 270, 305
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 285
FatI CATG 1 cut(s) 303
FauI CCCGC 1 cut(s) 7
FblI GTMKAC 1 cut(s) 291
FokI GGATG 1 cut(s) 151
GlaI GCGC 1 cut(s) 39
GsaI CCCAGC 2 cut(s) 204, 263
HaeIII GGCC 1 cut(s) 265
HapII CCGG 2 cut(s) 59, 146
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HpaII CCGG 2 cut(s) 59, 146
HphI GGTGA 2 cut(s) 73, 235
Hpy166II GTNNAC 2 cut(s) 172, 292
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 2 cut(s) 59, 217
Hpy8I GTNNAC 2 cut(s) 172, 292
HpyAV CCTTC 3 cut(s) 94, 187, 214
HpyCH4IV ACGT 2 cut(s) 67, 298
HpyCH4V TGCA 2 cut(s) 172, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpySE526I ACGT 2 cut(s) 67, 298
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 38
Kpn2I TCCGGA 1 cut(s) 58
LpnPI CCDG 7 cut(s) 72, 121, 159, 186, 245, 261, 298
MaeII ACGT 2 cut(s) 67, 298
MaeIII GTNAC 2 cut(s) 79, 125
MboII GAAGA 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 27, 174
MluCI AATT 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 3 cut(s) 111, 154, 309
MroI TCCGGA 1 cut(s) 58
MseI TTAA 1 cut(s) 352
MspI CCGG 2 cut(s) 59, 146
MspR9I CCNGG 2 cut(s) 146, 147
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 2 cut(s) 146, 147
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 188
PspFI CCCAGC 2 cut(s) 200, 259
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 263
PstI CTGCAG 1 cut(s) 314
RsaI GTAC 3 cut(s) 7, 143, 308
RsaNI GTAC 3 cut(s) 6, 142, 307
SaqAI TTAA 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 1 cut(s) 7
ScrFI CCNGG 2 cut(s) 146, 147
SduI GDGCHC 2 cut(s) 27, 174
SetI ASST 8 cut(s) 70, 86, 165, 198, 225, 279, 301, 320
SfcI CTRYAG 1 cut(s) 310
SmaI CCCGGG 1 cut(s) 147
Sse9I AATT 1 cut(s) 232
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 144, 145
TaiI ACGT 2 cut(s) 70, 301
TasI AATT 1 cut(s) 232
TatI WGTACW 2 cut(s) 5, 306
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 232, 285
TspGWI ACGGA 1 cut(s) 309
TspMI CCCGGG 1 cut(s) 145
VneI GTGCAC 1 cut(s) 170
XmaI CCCGGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 291
ZraI GACGTC 1 cut(s) 299
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.