Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009136

Physical Location & Seq

Genomic Coordinates Forward (+)

11030282 .. 11031536

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1100200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAACCAAAGGAGGCTGTCTGTTCCATTGGGGCTGAGGTTGAGTGCCAAGATATCACTTCTGATCCAAGGACCGTCCTAACGATATCCTATGGAGAGGGAACAAGTGCTGGGGTGGTGAGAAATGATCAGGCTGAGTTACCGGATCAAACTGATGCTCCACTCCGTAGCAACCTGAATCCGTTCGCCGAGGAATGGCACCCCATTCTGAACATGGCACCTGAAGAAGACAGGTGCTGTTTCTTCACGTTTTCGAACGGGTACCCTCTCACTGAGAGGCAGATTATCAACTTTTTCACTGAGCAATATGGAGGATGGTGCGTTGAGAGGGTGTACATTCATCGGCCAGAGACGAGGGAAGAGAAGCCGCCACTATTTGGAAGGATTGTGTTCCGTTCAGTTCTGATGACGGAGATAGTTCTTGGTGGGAAAGAAGAAGTTAAGTTTAGGATCGACCGAAGGCCCCTTTGGTGCAAGAGGTTTGACAAGGAGAGGGTTCGCCGTCCAATTTACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

20.03

Weight (kDa)

5.24

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44925
fragaria_vesca	FvH4_7g09600
malus_domestica	MD07G1100200.v1.1
prunus_persica	Prupe.7G081400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0346521
rosa_laevigata	RLG00000027597 RLG00000028795
rosa_multiflora	Rmu_sc0010136.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293500 Rroxscaffold_4G00308120
rosa_rugosa	Rorug01G0180900 Rorug01G0304200
rosa_samantha	Rh1AG199700 Rh1AG313300 Rh1BG166300 Rh1BG276400 Rh1CG184700 Rh1CG293200 Rh1DG197200 Rh1DG307100
rosa_wichuraiana	Rw1G016760 Rw1G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	3 cut(s)	198, 217, 261
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	3 cut(s)	59, 153, 458
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	263, 335
AfiI	CCNNNNNNNGG	2 cut(s)	195, 377
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	3 cut(s)	59, 153, 458
AlwNI	CAGNNNCTG	1 cut(s)	237
AoxI	GGCC	2 cut(s)	344, 461
Asp700I	GAANNNNTTC	1 cut(s)	182
Asp718I	GGTACC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	72, 462
AsuHPI	GGTGA	1 cut(s)	130
AsuII	TTCGAA	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	72
BanI	GGYRCC	3 cut(s)	198, 217, 261
BbsI	GAAGAC	1 cut(s)	234
BbvCI	CCTCAGC	1 cut(s)	36
BccI	CCATC	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	344
BisI	GCNGC	1 cut(s)	368
BlsI	GCNGC	1 cut(s)	369
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	2 cut(s)	72, 462
BmiI	GGNNCC	5 cut(s)	6, 200, 219, 263, 464
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	68, 189
BsaWI	WCCGGW	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 377
BseDI	CCNNGG	2 cut(s)	68, 189
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	2 cut(s)	195, 377
BseMII	CTCAG	4 cut(s)	27, 126, 264, 291
BseYI	CCCAGC	1 cut(s)	110
Bsh1285I	CGRYCG	1 cut(s)	457
BshFI	GGCC	2 cut(s)	346, 463
BshNI	GGYRCC	3 cut(s)	198, 217, 261
BsiEI	CGRYCG	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	195, 377
BsmAI	GTCTC	1 cut(s)	344
BsmBI	CGTCTC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	346, 463
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	64, 127, 145, 450
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	2 cut(s)	346, 463
BspCNI	CTCAG	4 cut(s)	28, 127, 265, 292
BspLI	GGNNCC	5 cut(s)	6, 200, 219, 263, 464
BspPI	GGATC	3 cut(s)	59, 153, 458
BspT104I	TTCGAA	1 cut(s)	254
BspT107I	GGYRCC	3 cut(s)	198, 217, 261
BsrGI	TGTACA	1 cut(s)	333
BssECI	CCNNGG	2 cut(s)	68, 189
BssMI	GATC	4 cut(s)	64, 127, 145, 450
BssT1I	CCWWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	254
BstDEI	CTNAG	4 cut(s)	36, 135, 273, 300
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	4 cut(s)	67, 130, 148, 453
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	4 cut(s)	64, 127, 145, 450
BstMCI	CGRYCG	1 cut(s)	457
BstV2I	GAAGAC	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	346, 463
BtsCI	GGATG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	270, 297
CaiI	CAGNNNCTG	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	72, 462
Csp6I	GTAC	2 cut(s)	262, 334
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	6 cut(s)	17, 35, 134, 346, 367, 463
CviKI_1	RGCY	6 cut(s)	17, 35, 134, 346, 367, 463
CviQI	GTAC	2 cut(s)	262, 334
DdeI	CTNAG	4 cut(s)	36, 135, 273, 300
DpnI	GATC	4 cut(s)	66, 129, 147, 452
DpnII	GATC	4 cut(s)	64, 127, 145, 450
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	68
Eco32I	GATATC	2 cut(s)	55, 87
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRV	GATATC	2 cut(s)	55, 87
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	93, 215, 309
FatI	CATG	1 cut(s)	213
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	368
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	368
GsaI	CCCAGC	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	346, 463
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	64, 210, 405
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	375, 453
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	1 cut(s)	474
HpyF3I	CTNAG	4 cut(s)	36, 135, 273, 300
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	217
KpnI	GGTACC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	64, 127, 145, 450
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	7 cut(s)	96, 116, 156, 188, 217, 234, 360
LweI	GCATC	1 cut(s)	145
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	138
MalI	GATC	4 cut(s)	66, 129, 147, 452
MboI	GATC	4 cut(s)	64, 127, 145, 450
MboII	GAAGA	5 cut(s)	235, 236, 239, 371, 446
MluCI	AATT	2 cut(s)	507, 514
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	1 cut(s)	441
MspI	CCGG	1 cut(s)	143
NdeII	GATC	4 cut(s)	64, 127, 145, 450
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	5 cut(s)	6, 200, 219, 263, 464
NmeAIII	GCCGAG	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	178
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	110
PspN4I	GGNNCC	5 cut(s)	6, 200, 219, 263, 464
PspPI	GGNCC	2 cut(s)	72, 462
PstNI	CAGNNNCTG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	263, 335
RsaNI	GTAC	2 cut(s)	262, 334
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	368
Sau3AI	GATC	4 cut(s)	64, 127, 145, 450
Sau96I	GGNCC	2 cut(s)	72, 462
SetI	ASST	6 cut(s)	42, 177, 223, 236, 251, 482
SfaNI	GCATC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	254
SinI	GGWCC	1 cut(s)	72
Sse9I	AATT	2 cut(s)	507, 514
SsiI	CCGC	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	2 cut(s)	254, 453
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	2 cut(s)	507, 514
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	277, 304
TspDTI	ATGAA	1 cut(s)	329
TspGWI	ACGGA	4 cut(s)	155, 171, 383, 425
TspRI	CASTG	2 cut(s)	277, 304
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.