Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009136

Physical Location & Seq

Genomic Coordinates Reverse (-)

13001431 .. 13001861

Gene Structure 431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027597

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGAAAATTGGAGAGCAGAAGCTACTCGGCGGAGTGGTGCTCTAACTGGCCCTGGAAATTTGACCCTAACTGTGTGGAGAGGGTATACGTACATCGGCCAGTTGGGCAGCCACCACTGTTCGGAAAGGTTGTGTTCCGATCAGTACTCATGCCGGCGCTGGTCCTTCAGGGCAAGGATTTGCAAAAGTATCTGGTAGATGGTTATCCGATATGGTGCAAAAAATATGACAGAAAGAAGGCTCAGCAAAGTAGACAATTAGAACCCTACTTTGTTTTGAAAATTAATTTTATCATCTTGATTGTTGACTGGCTAGTTTTGGGCGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

13.02

Weight (kDa)

9.19

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44925
fragaria_vesca	FvH4_7g09600
malus_domestica	MD07G1100200.v1.1
prunus_persica	Prupe.7G081400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0346521
rosa_laevigata	RLG00000027597 RLG00000028795
rosa_multiflora	Rmu_sc0010136.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293500 Rroxscaffold_4G00308120
rosa_rugosa	Rorug01G0180900 Rorug01G0304200
rosa_samantha	Rh1AG199700 Rh1AG313300 Rh1BG166300 Rh1BG276400 Rh1CG184700 Rh1CG293200 Rh1DG197200 Rh1DG307100
rosa_wichuraiana	Rw1G016760 Rw1G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	87, 253
AciI	CCGC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	93, 147
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	44
AoxI	GGCC	2 cut(s)	50, 98
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	59
AseI	ATTAAT	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	51, 163
AvaII	GGWCC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	55
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	161
BglI	GCCNNNNNGGC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	110
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	111
BmcAI	AGTACT	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	51, 163
BmrFI	CCNGG	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
Bpu1102I	GCTNAGC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	3 cut(s)	53, 101, 314
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	53
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	3 cut(s)	53, 101, 314
BseXI	GCAGC	1 cut(s)	121
BshFI	GGCC	2 cut(s)	52, 100
BsiHKAI	GWGCWC	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	2 cut(s)	52, 100
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	140
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	2 cut(s)	52, 100
BspCNI	CTCAG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	154
BsrI	ACTGG	3 cut(s)	53, 101, 314
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	1 cut(s)	140
BssNAI	GTATAC	1 cut(s)	88
Bst1107I	GTATAC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	74, 120
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	243
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSNI	TACGTA	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	121
BstZ17I	GTATAC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	52, 100
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	51, 163
Csp6I	GTAC	2 cut(s)	92, 146
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	6 cut(s)	24, 52, 100, 112, 242, 313
CviKI_1	RGCY	6 cut(s)	24, 52, 100, 112, 242, 313
CviQI	GTAC	2 cut(s)	92, 146
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	47
Eco105I	TACGTA	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	53
FaeI	CATG	1 cut(s)	154
FaiI	YATR	4 cut(s)	88, 152, 214, 228
FatI	CATG	1 cut(s)	150
FblI	GTMKAC	2 cut(s)	87, 253
Fnu4HI	GCNGC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	52, 100
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	155
Hpy166II	GTNNAC	3 cut(s)	88, 254, 307
Hpy188I	TCNGA	3 cut(s)	125, 140, 210
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	3 cut(s)	88, 254, 307
HpyAV	CCTTC	2 cut(s)	176, 232
HpyCH4III	ACNGT	2 cut(s)	74, 120
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	184, 219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	140
LpnPI	CCDG	9 cut(s)	34, 40, 67, 114, 146, 155, 168, 179, 295
Lsp1109I	GCAGC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	90
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	5 cut(s)	8, 59, 257, 282, 286
MnlI	CCTC	2 cut(s)	75, 319
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	1 cut(s)	285
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	106
NaeI	GCCGGC	1 cut(s)	156
NdeII	GATC	1 cut(s)	140
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	8
PdiI	GCCGGC	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	111
Ppu21I	YACGTR	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	51, 163
RsaI	GTAC	2 cut(s)	93, 147
RsaNI	GTAC	2 cut(s)	92, 146
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	2 cut(s)	51, 163
ScaI	AGTACT	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	3 cut(s)	26, 93, 132
SinI	GGWCC	1 cut(s)	163
SnaBI	TACGTA	1 cut(s)	91
Sse9I	AATT	5 cut(s)	8, 59, 257, 282, 286
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	74, 120
TaiI	ACGT	1 cut(s)	93
TasI	AATT	5 cut(s)	8, 59, 257, 282, 286
TatI	WGTACW	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	109
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	1 cut(s)	59
XmiI	GTMKAC	2 cut(s)	87, 253
XspI	CTAG	1 cut(s)	314
ZrmI	AGTACT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.