Rorug01G0180900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0009136
Physical Location & Seq
Forward (+)
24885927 .. 24886985
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0180900.1

Sequence Viewer

Length: 672 bp
ATGGAAGTAGTCAAGCTCTTCAGAACATGGTCAAGCCCTTTTGCTTTGAGAATAGTCTGGGCACTGAAGCTCAAAGATGTCCAATATGATACCATCTTTGAAGATCTCTCAAACAAAAGCCCTTTGCTTCTTCAATACAACCCTGTTCATAAGAAGGTTCCAGTGATTGTGCACAATGGAAAATCAGTTGCTGAATCATTTGTGATCCTTGAATACATTGAAGAATCATGGAAAGAGAACCCTTTGCTATCCGAAGATCCTCACGAAAGAGCCGCTGCACGCTTTTGGGCAAAATTTGGTGATGAAAAGGTTTTGCCATCTATTTGGGAAGCCTTTAACAGTGAAGGGAAAGAGCAAGAGGAAGGTATTGTGAAGGCGAAGGAGAACTTGAAGTACTTGGAAGAGGAGCTAAAGGGGAAGAAATTCTTTGGGGGAGAGCATATTGGATTTGCAGATATTGCACTTGGATGGCTTGCAGAATATGAGAATGTGTTTGAAGAGGTAACTAGCATGAAAGTGATTGCAGAAGATGAGTTTCCATTGTTATCAGAATGGAAAAGGACTTTTGCAGATGCTCCTATAATCAAAGAGAATTGGCCTCCCAGAGACAAACTTGTCACCAAATTTCAGGCTCTCCGAGAGGCCAACCTCTTGAAAAAGGTACCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.9

Weight (kDa)

5.46

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 3 - 75 2.1e-19 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 6 - 76 4.5e-10 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 12 - 75 4.1e-14 Glutathione S-transferase, N-terminal domain
GST_C PF00043 103 - 191 9.2e-11 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 614
Acc65I GGTACC 1 cut(s) 661
AccB1I GGYRCC 1 cut(s) 661
AciI CCGC 1 cut(s) 273
AclWI GGATC 2 cut(s) 199, 251
AcsI RAATTY 3 cut(s) 293, 422, 623
AcuI CTGAAG 2 cut(s) 4, 86
AfaI GTAC 2 cut(s) 395, 663
AgsI TTSAA 7 cut(s) 101, 134, 212, 221, 391, 497, 655
AluBI AGCT 3 cut(s) 16, 70, 409
AluI AGCT 3 cut(s) 16, 70, 409
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 600
Alw44I GTGCAC 1 cut(s) 170
AlwI GGATC 2 cut(s) 199, 251
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 2 cut(s) 596, 642
ApaLI GTGCAC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 3 cut(s) 293, 422, 623
Asp700I GAANNNNTTC 1 cut(s) 422
Asp718I GGTACC 1 cut(s) 661
AsuHPI GGTGA 2 cut(s) 311, 610
BaeGI GKGCMC 2 cut(s) 64, 174
BanI GGYRCC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 262
BccI CCATC 3 cut(s) 101, 325, 462
BcoDI GTCTC 1 cut(s) 600
BfaI CTAG 1 cut(s) 507
BglII AGATCT 1 cut(s) 103
BisI GCNGC 2 cut(s) 273, 276
BlsI GCNGC 2 cut(s) 274, 277
BmcAI AGTACT 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 159, 663
BmsI GCATC 1 cut(s) 562
Bse1I ACTGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 2 cut(s) 64, 174
BseXI GCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 2 cut(s) 598, 644
BshNI GGYRCC 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 600
BsnI GGCC 2 cut(s) 598, 644
Bsp1286I GDGCHC 2 cut(s) 64, 174
Bsp143I GATC 3 cut(s) 103, 204, 256
BspACI CCGC 1 cut(s) 273
BspANI GGCC 2 cut(s) 598, 644
BspLI GGNNCC 2 cut(s) 159, 663
BspPI GGATC 2 cut(s) 199, 251
BspQI GCTCTTC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 661
BsrI ACTGG 1 cut(s) 161
BssMI GATC 3 cut(s) 103, 204, 256
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 3 cut(s) 23, 396, 492
BstAPI GCANNNNNTGC 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 280, 474
BstF5I GGATG 1 cut(s) 473
BstKTI GATC 3 cut(s) 106, 207, 259
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 3 cut(s) 103, 204, 256
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstSLI GKGCMC 2 cut(s) 64, 174
BstV1I GCAGC 1 cut(s) 262
BstX2I RGATCY 2 cut(s) 103, 256
BstXI CCANNNNNNTGG 1 cut(s) 324
BstYI RGATCY 2 cut(s) 103, 256
BsuRI GGCC 2 cut(s) 598, 644
BtsCI GGATG 1 cut(s) 473
BtsIMutI CAGTG 3 cut(s) 62, 168, 346
Cac8I GCNNGC 2 cut(s) 280, 474
CaiI CAGNNNCTG 1 cut(s) 191
Csp6I GTAC 2 cut(s) 394, 662
CviAII CATG 3 cut(s) 27, 228, 511
CviQI GTAC 2 cut(s) 394, 662
DpnI GATC 3 cut(s) 105, 206, 258
DpnII GATC 3 cut(s) 103, 204, 256
DrdI GACNNNNNNGTC 1 cut(s) 614
DseDI GACNNNNNNGTC 1 cut(s) 614
Eam1104I CTCTTC 3 cut(s) 23, 396, 492
EarI CTCTTC 3 cut(s) 23, 396, 492
Eco57I CTGAAG 2 cut(s) 4, 86
FaeI CATG 3 cut(s) 30, 231, 514
FaiI YATR 8 cut(s) 28, 87, 150, 229, 441, 483, 512, 581
FalI AAGNNNNNCTT 4 cut(s) 371, 403, 410, 442
FatI CATG 3 cut(s) 26, 227, 510
Fnu4HI GCNGC 2 cut(s) 273, 276
FokI GGATG 1 cut(s) 480
Fsp4HI GCNGC 2 cut(s) 273, 276
FspBI CTAG 1 cut(s) 507
GluI GCNGC 2 cut(s) 273, 276
HaeIII GGCC 2 cut(s) 598, 644
Hin1II CATG 3 cut(s) 30, 231, 514
HinfI GANTC 2 cut(s) 194, 224
HphI GGTGA 2 cut(s) 311, 610
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 4 cut(s) 23, 253, 550, 638
Hpy188III TCNNGA 2 cut(s) 263, 652
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 5 cut(s) 148, 338, 356, 367, 373
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 7 cut(s) 172, 278, 452, 461, 476, 524, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
Hsp92II CATG 3 cut(s) 30, 231, 514
KpnI GGTACC 1 cut(s) 665
Kzo9I GATC 3 cut(s) 103, 204, 256
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 406, 580
LpnPI CCDG 5 cut(s) 43, 156, 174, 614, 616
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 562
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 2 cut(s) 502, 616
MalI GATC 3 cut(s) 105, 206, 258
MboI GATC 3 cut(s) 103, 204, 256
MboII GAAGA 9 cut(s) 10, 113, 122, 233, 266, 413, 430, 509, 539
MflI RGATCY 2 cut(s) 103, 256
MhlI GDGCHC 2 cut(s) 64, 174
MluCI AATT 4 cut(s) 293, 422, 592, 623
MnlI CCTC 7 cut(s) 270, 352, 397, 493, 609, 634, 659
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 2 cut(s) 466, 515
MspA1I CMGCKG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeII GATC 3 cut(s) 103, 204, 256
NlaIII CATG 3 cut(s) 30, 231, 514
NlaIV GGNNCC 2 cut(s) 159, 663
NmuCI GTSAC 1 cut(s) 616
PciSI GCTCTTC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 2 cut(s) 194, 224
PkrI GCNGC 2 cut(s) 274, 277
PspN4I GGNNCC 2 cut(s) 159, 663
PsrI GAACNNNNNNTAC 2 cut(s) 377, 409
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 2 cut(s) 103, 256
RsaI GTAC 2 cut(s) 395, 663
RsaNI GTAC 2 cut(s) 394, 662
RseI CAYNNNNRTG 2 cut(s) 466, 515
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 273, 276
Sau3AI GATC 3 cut(s) 103, 204, 256
ScaI AGTACT 1 cut(s) 395
SduI GDGCHC 2 cut(s) 64, 174
SfaNI GCATC 1 cut(s) 562
SmiMI CAYNNNNRTG 2 cut(s) 466, 515
Sse9I AATT 4 cut(s) 293, 422, 592, 623
SsiI CCGC 1 cut(s) 273
SspMI CTAG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 341
TasI AATT 4 cut(s) 293, 422, 592, 623
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 2 cut(s) 194, 224
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 3 cut(s) 69, 168, 346
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 137, 318, 527
TspRI CASTG 3 cut(s) 69, 168, 346
VneI GTGCAC 1 cut(s) 170
XapI RAATTY 3 cut(s) 293, 422, 623
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.