FvH4_7g09600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009136
Physical Location & Seq
Forward (+)
9226491 .. 9228285
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g09600.t1

Sequence Viewer

Length: 405 bp
ATGAAACCAAATCATGGGGGTGCAGGCATACTCGGGGCTGGACCATCAGCAAGTCGTTTTCGACTGAACCCGAATGCACCGGCATTTGACCCTAAGATTAACCGGGCGCCGGAGGAGGATAGGTGTTGCTTCCTCACATTCTCCAACGGCTATCCTATTGAGGAACTCAGCATCATAGAGTTTTTTAATCGGAAATTTGGCCCTAACTGTGTGGAGAGAGTCTACATACATCGGCCAGCTGGGGAGCCACCACTATTCGGAAAGGTTGTGTTCCGATCAGTACTCATGCCGGCGATGGTCCTTCAGGGCAAGGACCTGAAAAAGTACCTGGTGAATGCCCATCCGATGTGGTGTAAAAGATACGACAGAGAGAAGGCTCAACAAAGCAGACAATTACCGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.25

Weight (kDa)

9.57

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 106
AccB7I CCANNNNNTGG 1 cut(s) 14
AccI GTMKAC 1 cut(s) 222
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 287
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 2 cut(s) 282, 326
AfiI CCNNNNNNNGG 3 cut(s) 14, 109, 257
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 2 cut(s) 199, 233
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 4 cut(s) 41, 200, 298, 313
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 3 cut(s) 41, 298, 313
BanI GGYRCC 1 cut(s) 106
BccI CCATC 3 cut(s) 52, 289, 348
BceAI ACGGC 1 cut(s) 163
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 110
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 2 cut(s) 104, 329
Bme18I GGWCC 3 cut(s) 41, 298, 313
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 4 cut(s) 41, 200, 298, 313
BmiI GGNNCC 2 cut(s) 108, 246
BmrFI CCNGG 2 cut(s) 104, 329
BmsI GCATC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 104
BsaHI GRCGYC 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 109, 257
Bse118I RCCGGY 2 cut(s) 79, 289
BseBI CCWGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 3 cut(s) 14, 109, 257
BseMII CTCAG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 2 cut(s) 201, 235
BshNI GGYRCC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 4 cut(s) 80, 103, 110, 290
BslI CCNNNNNNNGG 3 cut(s) 14, 109, 257
BsmI GAATGC 2 cut(s) 79, 340
BsnI GGCC 2 cut(s) 201, 235
BsoBI CYCGRG 1 cut(s) 32
Bsp143I GATC 1 cut(s) 275
BspANI GGCC 2 cut(s) 201, 235
BspCNI CTCAG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 108, 246
BspT107I GGYRCC 1 cut(s) 106
BsrFI RCCGGY 2 cut(s) 79, 289
BssAI RCCGGY 2 cut(s) 79, 289
BssMI GATC 1 cut(s) 275
BssNI GRCGYC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 209, 399
BstACI GRCGYC 1 cut(s) 107
BstC8I GCNNGC 3 cut(s) 25, 237, 291
BstDEI CTNAG 2 cut(s) 93, 167
BstF5I GGATG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 1 cut(s) 278
BstMBI GATC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 102, 327
BsuRI GGCC 2 cut(s) 201, 235
BtgZI GCGATG 1 cut(s) 308
BtsCI GGATG 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 25, 237, 291
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 2 cut(s) 79, 289
Cfr13I GGNCC 4 cut(s) 41, 200, 298, 313
CsiI ACCWGGT 1 cut(s) 327
Csp6I GTAC 2 cut(s) 281, 325
CviAII CATG 2 cut(s) 14, 286
CviJI RGCY 7 cut(s) 38, 150, 201, 235, 239, 247, 377
CviKI_1 RGCY 7 cut(s) 38, 150, 201, 235, 239, 247, 377
CviQI GTAC 2 cut(s) 281, 325
DdeI CTNAG 2 cut(s) 93, 167
DinI GGCGCC 1 cut(s) 108
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 233
Eco47I GGWCC 3 cut(s) 41, 298, 313
Eco57I CTGAAG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 327
EgeI GGCGCC 1 cut(s) 108
EheI GGCGCC 1 cut(s) 108
FaeI CATG 2 cut(s) 17, 289
FaiI YATR 5 cut(s) 15, 29, 176, 227, 287
FatI CATG 2 cut(s) 13, 285
FblI GTMKAC 1 cut(s) 222
FokI GGATG 1 cut(s) 327
GlaI GCGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 2 cut(s) 201, 235
HapII CCGG 4 cut(s) 80, 103, 110, 290
HhaI GCGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 2 cut(s) 17, 289
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 1 cut(s) 219
HpaII CCGG 4 cut(s) 80, 103, 110, 290
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 192, 260, 275, 345
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 311, 367
HpyCH4III ACNGT 2 cut(s) 209, 399
HpyCH4V TGCA 2 cut(s) 23, 77
HpyF3I CTNAG 2 cut(s) 93, 167
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 2 cut(s) 17, 289
HspAI GCGC 1 cut(s) 107
KasI GGCGCC 1 cut(s) 106
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Kzo9I GATC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 244
LweI GCATC 1 cut(s) 180
MabI ACCWGGT 1 cut(s) 327
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MluCI AATT 2 cut(s) 194, 392
Mly113I GGCGCC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 4 cut(s) 106, 109, 143, 154
MroNI GCCGGC 1 cut(s) 289
MseI TTAA 3 cut(s) 99, 186, 403
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 4 cut(s) 80, 103, 110, 290
MspR9I CCNGG 2 cut(s) 104, 329
Mva1269I GAATGC 2 cut(s) 79, 340
MvaI CCWGG 1 cut(s) 329
NaeI GCCGGC 1 cut(s) 291
NarI GGCGCC 1 cut(s) 107
NciI CCSGG 1 cut(s) 104
NdeII GATC 1 cut(s) 275
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 2 cut(s) 17, 289
NlaIV GGNNCC 2 cut(s) 108, 246
PctI GAATGC 2 cut(s) 79, 340
PdiI GCCGGC 1 cut(s) 291
PflMI CCANNNNNTGG 1 cut(s) 14
PleI GAGTC 1 cut(s) 227
PluTI GGCGCC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 2 cut(s) 108, 246
PspPI GGNCC 4 cut(s) 41, 200, 298, 313
PspPPI RGGWCCY 1 cut(s) 313
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 282, 326
RsaNI GTAC 2 cut(s) 281, 325
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 3 cut(s) 99, 186, 403
Sau3AI GATC 1 cut(s) 275
Sau96I GGNCC 4 cut(s) 41, 200, 298, 313
ScaI AGTACT 1 cut(s) 282
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 104, 329
SetI ASST 5 cut(s) 125, 241, 267, 318, 330
SexAI ACCWGGT 1 cut(s) 327
SfaNI GCATC 1 cut(s) 180
SfoI GGCGCC 1 cut(s) 108
SinI GGWCC 3 cut(s) 41, 298, 313
SmiMI CAYNNNNRTG 1 cut(s) 18
Sse9I AATT 2 cut(s) 194, 392
SspDI GGCGCC 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 102, 327
TaaI ACNGT 2 cut(s) 209, 399
TaqI TCGA 1 cut(s) 61
TasI AATT 2 cut(s) 194, 392
TatI WGTACW 1 cut(s) 280
Tru1I TTAA 3 cut(s) 99, 186, 403
Tru9I TTAA 3 cut(s) 99, 186, 403
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 14
VpaK11BI GGWCC 3 cut(s) 41, 298, 313
XapI RAATTY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 222
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.