Rh1CG184700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009136
Physical Location & Seq
Forward (+)
40510163 .. 40510730
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG184700.1

Sequence Viewer

Length: 405 bp
ATGGTGCCTAATCATGGGGGTGCAGGCATACTCGGGGCTGCACCATCAGCAAGTCGTTTTCGACTGAACCCGGATGCACCGGCATTTCACCCCAGGATTAACCGGGCACCAGAAGAGGATAGGTGCTGCTTCCTCACATTCTCAAACGGTTATCCTATTGAGGAGCTCAGCATCATATCGTTCTTCAACGAGAAATTTGGCCCTAACTGTGTGGAGAGGGTGTACGTACACCGGCCAGTTGGGCAGCCACCACTGTTCGGAAAGGTTGTGTTCCGATCAGTACTTACGCCGGCGCTGGTCCTTCAGGGCAAGGATTTACAAAAGTATCTGGTAGATGGTAATCCGATATGGTGCAAGAAATATGACAGAGAGAAGGCTCAGCAAAGTAGACAATTAGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.06

Weight (kDa)

9.0

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 106
AccI GTMKAC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 3 cut(s) 224, 228, 282
AfiI CCNNNNNNNGG 2 cut(s) 14, 257
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw21I GWGCWC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 2 cut(s) 199, 233
ApeKI GCWGC 3 cut(s) 38, 126, 244
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 2 cut(s) 200, 298
AsuC2I CCSGG 2 cut(s) 71, 104
AsuHPI GGTGA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 1 cut(s) 298
BaeGI GKGCMC 1 cut(s) 109
BaeI ACNNNNGTAYC 2 cut(s) 308, 341
BanI GGYRCC 2 cut(s) 4, 106
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 3 cut(s) 25, 113, 256
BccI CCATC 2 cut(s) 52, 329
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 2 cut(s) 71, 104
BfoI RGCGCY 1 cut(s) 296
BglI GCCNNNNNGGC 1 cut(s) 241
BisI GCNGC 3 cut(s) 39, 127, 245
BlpI GCTNAGC 2 cut(s) 167, 378
BlsI GCNGC 3 cut(s) 40, 128, 246
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 3 cut(s) 71, 94, 104
Bme18I GGWCC 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 200, 298
BmiI GGNNCC 2 cut(s) 6, 108
BmrFI CCNGG 3 cut(s) 71, 94, 104
BmsI GCATC 2 cut(s) 64, 180
Bpu1102I GCTNAGC 2 cut(s) 167, 378
BpuMI CCSGG 2 cut(s) 71, 104
BsaAI YACGTR 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 257
Bse118I RCCGGY 3 cut(s) 79, 231, 289
Bse1I ACTGG 1 cut(s) 236
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 2 cut(s) 14, 257
BseMII CTCAG 2 cut(s) 181, 392
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 176
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 3 cut(s) 25, 113, 256
BsgI GTGCAG 2 cut(s) 24, 42
BshFI GGCC 2 cut(s) 201, 235
BshNI GGYRCC 2 cut(s) 4, 106
BsiHKAI GWGCWC 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 5 cut(s) 71, 80, 103, 232, 290
BslI CCNNNNNNNGG 2 cut(s) 14, 257
BsnI GGCC 2 cut(s) 201, 235
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 109, 168
Bsp143I GATC 1 cut(s) 275
Bsp1720I GCTNAGC 2 cut(s) 167, 378
BspANI GGCC 2 cut(s) 201, 235
BspCNI CTCAG 2 cut(s) 180, 391
BspLI GGNNCC 2 cut(s) 6, 108
BspT107I GGYRCC 2 cut(s) 4, 106
BsrFI RCCGGY 3 cut(s) 79, 231, 289
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 3 cut(s) 79, 231, 289
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 3 cut(s) 149, 209, 255
Bst6I CTCTTC 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 25, 291
BstDEI CTNAG 3 cut(s) 167, 378, 402
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 1 cut(s) 278
BstMBI GATC 1 cut(s) 275
BstMWI GCNNNNNNNGC 2 cut(s) 47, 241
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 3 cut(s) 69, 92, 102
BstSLI GKGCMC 1 cut(s) 109
BstSNI TACGTA 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 25, 113, 256
BsuRI GGCC 2 cut(s) 201, 235
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 2 cut(s) 25, 291
CfoI GCGC 1 cut(s) 295
Cfr10I RCCGGY 3 cut(s) 79, 231, 289
Cfr13I GGNCC 2 cut(s) 200, 298
Csp6I GTAC 3 cut(s) 223, 227, 281
CviAII CATG 1 cut(s) 14
CviJI RGCY 6 cut(s) 38, 166, 201, 235, 247, 377
CviKI_1 RGCY 6 cut(s) 38, 166, 201, 235, 247, 377
CviQI GTAC 3 cut(s) 223, 227, 281
DdeI CTNAG 3 cut(s) 167, 378, 402
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 166
Eco105I TACGTA 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 287
Eco88I CYCGRG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 1 cut(s) 17
FaiI YATR 5 cut(s) 15, 29, 176, 349, 363
FatI CATG 1 cut(s) 13
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 3 cut(s) 39, 127, 245
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 3 cut(s) 39, 127, 245
GlaI GCGC 1 cut(s) 294
GluI GCNGC 3 cut(s) 39, 127, 245
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 2 cut(s) 201, 235
HapII CCGG 5 cut(s) 71, 80, 103, 232, 290
HhaI GCGC 1 cut(s) 295
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 1 cut(s) 398
HpaII CCGG 5 cut(s) 71, 80, 103, 232, 290
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 3 cut(s) 223, 229, 389
Hpy188I TCNGA 3 cut(s) 260, 275, 345
Hpy8I GTNNAC 3 cut(s) 223, 229, 389
HpyAV CCTTC 2 cut(s) 311, 367
HpyCH4III ACNGT 3 cut(s) 149, 209, 255
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 4 cut(s) 23, 41, 77, 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 241
HpyF3I CTNAG 3 cut(s) 167, 378, 402
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 1 cut(s) 293
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Kzo9I GATC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 3 cut(s) 25, 113, 256
LweI GCATC 2 cut(s) 64, 180
MaeII ACGT 1 cut(s) 225
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MboII GAAGA 2 cut(s) 125, 175
MhlI GDGCHC 2 cut(s) 109, 168
MluCI AATT 2 cut(s) 194, 392
MnlI CCTC 4 cut(s) 109, 143, 154, 210
MreI CGCCGGCG 1 cut(s) 289
MroNI GCCGGC 1 cut(s) 289
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 18
MspI CCGG 5 cut(s) 71, 80, 103, 232, 290
MspR9I CCNGG 3 cut(s) 71, 94, 104
MvaI CCWGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 47, 241
NaeI GCCGGC 1 cut(s) 291
NciI CCSGG 2 cut(s) 71, 104
NdeII GATC 1 cut(s) 275
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 2 cut(s) 6, 108
PdiI GCCGGC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 3 cut(s) 40, 128, 246
Ppu21I YACGTR 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 6, 108
PspPI GGNCC 2 cut(s) 200, 298
RsaI GTAC 3 cut(s) 224, 228, 282
RsaNI GTAC 3 cut(s) 223, 227, 281
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 3 cut(s) 39, 127, 245
Sau3AI GATC 1 cut(s) 275
Sau96I GGNCC 2 cut(s) 200, 298
ScaI AGTACT 1 cut(s) 282
ScrFI CCNGG 3 cut(s) 71, 94, 104
SduI GDGCHC 2 cut(s) 109, 168
SetI ASST 4 cut(s) 125, 168, 228, 267
SfaNI GCATC 2 cut(s) 64, 180
SgrAI CRCCGGYG 1 cut(s) 289
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 18
SnaBI TACGTA 1 cut(s) 226
Sse9I AATT 2 cut(s) 194, 392
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 3 cut(s) 69, 92, 102
TaaI ACNGT 3 cut(s) 149, 209, 255
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 61
TasI AATT 2 cut(s) 194, 392
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 258
TseI GCWGC 3 cut(s) 38, 126, 244
TspRI CASTG 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.