Prupe.7G081400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009136
Physical Location & Seq
Forward (+)
11660144 .. 11661331
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G081400.1

Sequence Viewer

Length: 468 bp
ATGGAACAGAAGCGGGAGGCTGGCTCTTCCAATGGAGAGGCGGTTGTGGTTGGCCCTGAAGGGTCTGTTGATCAAAGTAATGAAAGCGTTGCATCTGTCGACTCATCATCAGCAGTAACTGAAAGCAATCTCAGCCCCTATGCGGCGGAGTGGGAACCTTTTTACTATAAGGCACCTGAAGATGACAGGTGTTGCTTTATCACATTTTCCAATGGGTTCCCGCTCACTGAGGACCAAATTATGGACTTCTTCAATGAGAGATTTGGTTCATGTGTTGAGAGGGTGTACGTTCATTGCCCGCACCCGTGGGAGGATCCTCTCTTCGGAAAAGTTGTGTTCAATTCAGTTCTGATGCCGGCGATCGTGCTCCGAGGCCAAGGTCAAGTGAAGTTTAAAATTGATCGAAGGCCCCTTTGGTGCAAGAGGTTTGACAGGGGCAAGCGTCGCAACCCAGCATTGATTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.61

Weight (kDa)

5.25

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 241
AccBSI CCGCTC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 99
AciI CCGC 6 cut(s) 13, 41, 143, 146, 221, 299
AclWI GGATC 2 cut(s) 308, 321
AcuI CTGAAG 2 cut(s) 78, 198
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 4 cut(s) 142, 241, 310, 323
AgsI TTSAA 2 cut(s) 253, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 397, 429
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 2 cut(s) 308, 321
AlwNI CAGNNNCTG 1 cut(s) 119
AoxI GGCC 3 cut(s) 52, 373, 407
AspS9I GGNCC 3 cut(s) 53, 232, 408
AvaII GGWCC 1 cut(s) 232
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 369
BclI TGATCA 1 cut(s) 70
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 3 cut(s) 53, 232, 408
BmiI GGNNCC 5 cut(s) 156, 174, 218, 315, 410
BmsI GCATC 2 cut(s) 101, 342
BplI GAGNNNNNCTC 2 cut(s) 8, 40
BsaJI CCNNGG 3 cut(s) 305, 370, 376
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bsc4I CCNNNNNNNGG 4 cut(s) 142, 241, 310, 323
Bse118I RCCGGY 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 292
BseDI CCNNGG 3 cut(s) 305, 370, 376
BseLI CCNNNNNNNGG 4 cut(s) 142, 241, 310, 323
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 145, 219
BseYI CCCAGC 1 cut(s) 451
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 3 cut(s) 54, 375, 409
BshNI GGYRCC 1 cut(s) 172
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 356
BslI CCNNNNNNNGG 4 cut(s) 142, 241, 310, 323
BsnI GGCC 3 cut(s) 54, 375, 409
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 4 cut(s) 70, 313, 360, 400
BspACI CCGC 6 cut(s) 13, 41, 143, 146, 221, 299
BspANI GGCC 3 cut(s) 54, 375, 409
BspCNI CTCAG 2 cut(s) 144, 220
BspLI GGNNCC 5 cut(s) 156, 174, 218, 315, 410
BspPI GGATC 2 cut(s) 308, 321
BspQI GCTCTTC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 305, 370, 376
BssMI GATC 4 cut(s) 70, 313, 360, 400
BssT1I CCWWGG 1 cut(s) 376
Bst6I CTCTTC 2 cut(s) 31, 326
BstC8I GCNNGC 4 cut(s) 22, 299, 357, 440
BstDEI CTNAG 2 cut(s) 131, 228
BstDSI CCRYGG 1 cut(s) 305
BstKTI GATC 4 cut(s) 73, 316, 363, 403
BstMBI GATC 4 cut(s) 70, 313, 360, 400
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 2 cut(s) 132, 444
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 3 cut(s) 54, 375, 409
BtgI CCRYGG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 4 cut(s) 22, 299, 357, 440
CaiI CAGNNNCTG 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 3 cut(s) 53, 232, 408
CseI GACGC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 270
CviJI RGCY 6 cut(s) 20, 24, 54, 135, 375, 409
CviKI_1 RGCY 6 cut(s) 20, 24, 54, 135, 375, 409
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 131, 228
DpnI GATC 4 cut(s) 72, 315, 362, 402
DpnII GATC 4 cut(s) 70, 313, 360, 400
DraI TTTAAA 1 cut(s) 394
Eam1104I CTCTTC 2 cut(s) 31, 326
EarI CTCTTC 2 cut(s) 31, 326
EciI GGCGGA 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 78, 198
EcoO109I RGGNCCY 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 1 cut(s) 273
FaiI YATR 4 cut(s) 141, 168, 242, 271
FatI CATG 1 cut(s) 269
FauI CCCGC 3 cut(s) 6, 228, 306
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 455
HaeIII GGCC 3 cut(s) 54, 375, 409
HapII CCGG 1 cut(s) 356
HgaI GACGC 1 cut(s) 431
Hin1II CATG 1 cut(s) 273
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 1 cut(s) 101
HpaII CCGG 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 100, 286
Hpy188I TCNGA 3 cut(s) 326, 351, 371
Hpy8I GTNNAC 2 cut(s) 100, 286
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 2 cut(s) 53, 399
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 92, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 444
HpyF3I CTNAG 2 cut(s) 131, 228
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 1 cut(s) 273
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 4 cut(s) 70, 313, 360, 400
LguI GCTCTTC 1 cut(s) 31
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 6 cut(s) 6, 69, 172, 189, 369, 418
LweI GCATC 2 cut(s) 101, 342
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 115
MalI GATC 4 cut(s) 72, 315, 362, 402
MbiI CCGCTC 1 cut(s) 223
MboI GATC 4 cut(s) 70, 313, 360, 400
MboII GAAGA 4 cut(s) 18, 191, 241, 313
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 3 cut(s) 237, 340, 396
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 8 cut(s) 10, 31, 223, 273, 304, 327, 365, 417
MroNI GCCGGC 1 cut(s) 355
MseI TTAA 1 cut(s) 393
MspI CCGG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 132, 444
NaeI GCCGGC 1 cut(s) 357
NdeII GATC 4 cut(s) 70, 313, 360, 400
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 1 cut(s) 273
NlaIV GGNNCC 5 cut(s) 156, 174, 218, 315, 410
PciSI GCTCTTC 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 357
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 1 cut(s) 145
Ple19I CGATCG 1 cut(s) 363
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 451
PspN4I GGNNCC 5 cut(s) 156, 174, 218, 315, 410
PspPI GGNCC 3 cut(s) 53, 232, 408
PstNI CAGNNNCTG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 313
PvuI CGATCG 1 cut(s) 363
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SalI GTCGAC 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 4 cut(s) 70, 313, 360, 400
Sau96I GGNCC 3 cut(s) 53, 232, 408
SchI GAGTC 1 cut(s) 95
SduI GDGCHC 1 cut(s) 369
SetI ASST 6 cut(s) 160, 178, 191, 291, 382, 428
SfaNI GCATC 2 cut(s) 101, 342
SinI GGWCC 1 cut(s) 232
Sse9I AATT 3 cut(s) 237, 340, 396
SsiI CCGC 6 cut(s) 13, 41, 143, 146, 221, 299
StyI CCWWGG 1 cut(s) 376
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 99, 403
TasI AATT 3 cut(s) 237, 340, 396
TauI GCSGC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 96, 258, 281
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 241
VpaK11BI GGWCC 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.