Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009136

Physical Location & Seq

Genomic Coordinates Forward (+)

41965012 .. 41965794

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0304200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAGTTCAAGCCGGCAGCCATGATTGTCGATCTTTTCGGCACCGCTGTTCTTCCCGTGGCCGATGAGTTCCACATGCTCAAGTATGTAAGAGTCTCGTGTGCTTGGCCCCTTGCCCTGCTTTTATACGCTCCTATTCTAGATAAGGAGGTGGAAGGAGAATACTTGGATAAAAAAGAACCACTTAAGATCCCGGGTTGCAAGCCTGTTCGACCGGAAGACGTTGTTAAGCCCATGATGAACAGAAAAGATCCCGAATACGAGTCCTTCATACGTATTGGGGTAGAGATAAGCGAGATGAGTGATGGGATTTTGGTCAACACTTGGGAAGATCTGGAGTCAATGAGTCTTAGACCCATGAGAGAGGATCCAGAGTGGAAGCAGATCCTTAAGGTTCCGGTCCATACTTTCGGTCCCATGATTAGGCCGGCAGGGCGCTCCACTCCGAGGAGCGAGGTGTTGGGTTGGCTGGACATGCAGCCCAATGCCTCTGTGATTTACATTTCTTTTGGGAGTGGTGGGGTTCTGTCGGCTGATCAAATTACCGAGATGGCTTGGGGTATAGAGCTTACCGCTCAGAGATTTATATGGGTAGTGCATCCACCAAGCAAAGATGGTGACAGAGGCAATGACATTTCAGACTACTTGCCTGAAGGGTTCATGGCTCGGACTCGTGACAAGTGGTCACCACTTGGGCTCCTCAGATGGAAATCTTGGCTCATTCATCAGTCGGAGGGTTCTTGTCACACTATGGTTGGAACTCGTCGCTGGAGAATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

29.75

Weight (kDa)

5.64

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44925
fragaria_vesca	FvH4_7g09600
malus_domestica	MD07G1100200.v1.1
prunus_persica	Prupe.7G081400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0346521
rosa_laevigata	RLG00000027597 RLG00000028795
rosa_multiflora	Rmu_sc0010136.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293500 Rroxscaffold_4G00308120
rosa_rugosa	Rorug01G0180900 Rorug01G0304200
rosa_samantha	Rh1AG199700 Rh1AG313300 Rh1BG166300 Rh1BG276400 Rh1CG184700 Rh1CG293200 Rh1DG197200 Rh1DG307100
rosa_wichuraiana	Rw1G016760 Rw1G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	575
AciI	CCGC	2 cut(s)	45, 573
AclWI	GGATC	5 cut(s)	184, 245, 362, 375, 379
AcoI	YGGCCR	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	672
AfiI	CCNNNNNNNGG	2 cut(s)	423, 447
AflII	CTTAAG	2 cut(s)	185, 389
AgsI	TTSAA	1 cut(s)	10
AhdI	GACNNNNNGTC	1 cut(s)	682
AluBI	AGCT	1 cut(s)	568
AluI	AGCT	1 cut(s)	568
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	5 cut(s)	184, 245, 362, 375, 379
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	3 cut(s)	60, 107, 425
ApeKI	GCWGC	2 cut(s)	17, 478
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	3 cut(s)	108, 400, 413
AsuC2I	CCSGG	2 cut(s)	194, 195
AsuHPI	GGTGA	2 cut(s)	629, 678
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	400, 413
BamHI	GGATCC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	699
BauI	CACGAG	2 cut(s)	97, 672
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	29, 490
BccI	CCATC	4 cut(s)	299, 544, 608, 699
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	194, 195
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	439
BfrI	CTTAAG	2 cut(s)	185, 389
BglI	GCCNNNNNGGC	1 cut(s)	433
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	2 cut(s)	18, 479
BlsI	GCNGC	2 cut(s)	19, 480
Bme1390I	CCNGG	2 cut(s)	194, 195
Bme18I	GGWCC	2 cut(s)	400, 413
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	108, 400, 413
BmiI	GGNNCC	6 cut(s)	43, 110, 369, 396, 415, 698
BmrFI	CCNGG	2 cut(s)	194, 195
BmsI	GCATC	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	194, 195
BsaAI	YACGTR	1 cut(s)	275
BsaBI	GATNNNNATC	1 cut(s)	709
BsaJI	CCNNGG	3 cut(s)	57, 193, 446
BsaWI	WCCGGW	2 cut(s)	214, 397
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 447
Bse118I	RCCGGY	2 cut(s)	13, 427
Bse3DI	GCAATG	1 cut(s)	634
Bse8I	GATNNNNATC	1 cut(s)	709
BseDI	CCNNGG	3 cut(s)	57, 193, 446
BseGI	GGATG	1 cut(s)	598
BseJI	GATNNNNATC	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	423, 447
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	2 cut(s)	590, 715
BseRI	GAGGAG	2 cut(s)	463, 689
BseXI	GCAGC	2 cut(s)	29, 490
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	3 cut(s)	62, 109, 427
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	5 cut(s)	14, 194, 215, 398, 428
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	423, 447
BsmAI	GTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	3 cut(s)	62, 109, 427
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp143I	GATC	7 cut(s)	31, 189, 250, 331, 367, 384, 535
BspACI	CCGC	2 cut(s)	45, 573
BspANI	GGCC	3 cut(s)	62, 109, 427
BspCNI	CTCAG	2 cut(s)	589, 714
BspLI	GGNNCC	6 cut(s)	43, 110, 369, 396, 415, 698
BspPI	GGATC	5 cut(s)	184, 245, 362, 375, 379
BspT107I	GGYRCC	1 cut(s)	41
BspTI	CTTAAG	2 cut(s)	185, 389
BsrBI	CCGCTC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	634
BsrFI	RCCGGY	2 cut(s)	13, 427
BssAI	RCCGGY	2 cut(s)	13, 427
BssECI	CCNNGG	3 cut(s)	57, 193, 446
BssMI	GATC	7 cut(s)	31, 189, 250, 331, 367, 384, 535
BssSI	CACGAG	2 cut(s)	97, 672
Bst2BI	CACGAG	2 cut(s)	97, 672
BstAFI	CTTAAG	2 cut(s)	185, 389
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	15, 203, 429
BstDEI	CTNAG	3 cut(s)	350, 576, 701
BstDSI	CCRYGG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	684
BstF5I	GGATG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	7 cut(s)	34, 192, 253, 334, 370, 387, 538
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	7 cut(s)	31, 189, 250, 331, 367, 384, 535
BstMCI	CGRYCG	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	433, 475
BstNSI	RCATGY	2 cut(s)	79, 478
BstPI	GGTNACC	1 cut(s)	684
BstSCI	CCNGG	2 cut(s)	192, 193
BstSNI	TACGTA	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	29, 490
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	5 cut(s)	189, 250, 331, 367, 384
BstYI	RGATCY	5 cut(s)	189, 250, 331, 367, 384
BsuRI	GGCC	3 cut(s)	62, 109, 427
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	598
Cac8I	GCNNGC	3 cut(s)	15, 203, 429
CfoI	GCGC	1 cut(s)	438
Cfr10I	RCCGGY	2 cut(s)	13, 427
Cfr13I	GGNCC	3 cut(s)	108, 400, 413
Cfr9I	CCCGGG	1 cut(s)	193
CviAII	CATG	7 cut(s)	22, 76, 235, 358, 418, 475, 661
DdeI	CTNAG	3 cut(s)	350, 576, 701
DpnI	GATC	7 cut(s)	33, 191, 252, 333, 369, 386, 537
DpnII	GATC	7 cut(s)	31, 189, 250, 331, 367, 384, 535
DriI	GACNNNNNGTC	1 cut(s)	682
EaeI	YGGCCR	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	682
Eco105I	TACGTA	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	699
Eco47I	GGWCC	2 cut(s)	400, 413
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	684
EcoO65I	GGTNACC	1 cut(s)	684
EcoT38I	GRGCYC	1 cut(s)	699
FaeI	CATG	7 cut(s)	25, 79, 238, 361, 421, 478, 664
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	7 cut(s)	21, 75, 234, 357, 417, 474, 660
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	18, 479
FokI	GGATG	1 cut(s)	585
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	2 cut(s)	18, 479
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	2 cut(s)	18, 479
GsuI	CTGGAG	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	3 cut(s)	62, 109, 427
HapII	CCGG	5 cut(s)	14, 194, 215, 398, 428
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	7 cut(s)	25, 79, 238, 361, 421, 478, 664
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	5 cut(s)	93, 263, 338, 346, 670
HpaII	CCGG	5 cut(s)	14, 194, 215, 398, 428
HphI	GGTGA	2 cut(s)	629, 678
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	6 cut(s)	447, 579, 640, 669, 704, 733
Hpy188III	TCNNGA	5 cut(s)	140, 254, 335, 371, 674
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	768
HpyAV	CCTTC	3 cut(s)	149, 277, 647
HpyCH4IV	ACGT	2 cut(s)	222, 274
HpyCH4V	TGCA	3 cut(s)	201, 478, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	433, 475
HpyF3I	CTNAG	3 cut(s)	350, 576, 701
HpySE526I	ACGT	2 cut(s)	222, 274
Hsp92II	CATG	7 cut(s)	25, 79, 238, 361, 421, 478, 664
HspAI	GCGC	1 cut(s)	436
KroI	GCCGGC	2 cut(s)	13, 427
KroNI	GCCGGC	2 cut(s)	15, 429
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	7 cut(s)	31, 189, 250, 331, 367, 384, 535
LmnI	GCTCC	4 cut(s)	136, 443, 450, 702
Lsp1109I	GCAGC	2 cut(s)	29, 490
LweI	GCATC	1 cut(s)	607
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	222, 274
MaeIII	GTNAC	4 cut(s)	617, 674, 684, 743
MalI	GATC	7 cut(s)	33, 191, 252, 333, 369, 386, 537
MbiI	CCGCTC	1 cut(s)	575
MboI	GATC	7 cut(s)	31, 189, 250, 331, 367, 384, 535
MboII	GAAGA	3 cut(s)	44, 230, 341
MflI	RGATCY	5 cut(s)	189, 250, 331, 367, 384
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	1 cut(s)	540
MlyI	GAGTC	5 cut(s)	102, 272, 347, 355, 664
MmeI	TCCRAC	2 cut(s)	711, 736
MnlI	CCTC	8 cut(s)	142, 358, 441, 448, 499, 617, 710, 727
MroNI	GCCGGC	2 cut(s)	13, 427
MseI	TTAA	3 cut(s)	186, 228, 390
MspA1I	CMGCKG	1 cut(s)	47
MspCI	CTTAAG	2 cut(s)	185, 389
MspI	CCGG	5 cut(s)	14, 194, 215, 398, 428
MspR9I	CCNGG	2 cut(s)	194, 195
MwoI	GCNNNNNNNGC	2 cut(s)	433, 475
NaeI	GCCGGC	2 cut(s)	15, 429
NciI	CCSGG	2 cut(s)	194, 195
NdeII	GATC	7 cut(s)	31, 189, 250, 331, 367, 384, 535
NgoMIV	GCCGGC	2 cut(s)	13, 427
NlaIII	CATG	7 cut(s)	25, 79, 238, 361, 421, 478, 664
NlaIV	GGNNCC	6 cut(s)	43, 110, 369, 396, 415, 698
NmuCI	GTSAC	4 cut(s)	617, 674, 684, 743
NspI	RCATGY	2 cut(s)	79, 478
PdiI	GCCGGC	2 cut(s)	15, 429
PkrI	GCNGC	2 cut(s)	19, 480
PleI	GAGTC	5 cut(s)	101, 271, 346, 354, 664
PpsI	GAGTC	5 cut(s)	101, 271, 346, 354, 664
Ppu21I	YACGTR	1 cut(s)	275
PspEI	GGTNACC	1 cut(s)	684
PspN4I	GGNNCC	6 cut(s)	43, 110, 369, 396, 415, 698
PspPI	GGNCC	3 cut(s)	108, 400, 413
PsuI	RGATCY	5 cut(s)	189, 250, 331, 367, 384
SaqAI	TTAA	3 cut(s)	186, 228, 390
SatI	GCNGC	2 cut(s)	18, 479
Sau3AI	GATC	7 cut(s)	31, 189, 250, 331, 367, 384, 535
Sau96I	GGNCC	3 cut(s)	108, 400, 413
SchI	GAGTC	5 cut(s)	102, 272, 347, 355, 664
ScrFI	CCNGG	2 cut(s)	194, 195
SduI	GDGCHC	1 cut(s)	699
SetI	ASST	6 cut(s)	153, 225, 277, 396, 459, 570
SfaNI	GCATC	1 cut(s)	607
SinI	GGWCC	2 cut(s)	400, 413
SmaI	CCCGGG	1 cut(s)	195
SmlI	CTYRAG	3 cut(s)	80, 185, 389
SmoI	CTYRAG	3 cut(s)	80, 185, 389
SnaBI	TACGTA	1 cut(s)	275
Sse9I	AATT	1 cut(s)	540
SsiI	CCGC	2 cut(s)	45, 573
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	192, 193
TaiI	ACGT	2 cut(s)	225, 277
TaqI	TCGA	2 cut(s)	30, 211
TaqII	GACCGA	1 cut(s)	401
TasI	AATT	1 cut(s)	540
Tru1I	TTAA	3 cut(s)	186, 228, 390
Tru9I	TTAA	3 cut(s)	186, 228, 390
TseFI	GTSAC	4 cut(s)	617, 674, 684, 743
TseI	GCWGC	2 cut(s)	17, 478
Tsp45I	GTSAC	4 cut(s)	617, 674, 684, 743
TspDTI	ATGAA	4 cut(s)	254, 259, 649, 713
TspMI	CCCGGG	1 cut(s)	193
Vha464I	CTTAAG	2 cut(s)	185, 389
VpaK11BI	GGWCC	2 cut(s)	400, 413
XbaI	TCTAGA	1 cut(s)	139
XceI	RCATGY	2 cut(s)	79, 478
XmaI	CCCGGG	1 cut(s)	193
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.