Rw1G016760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0009136
Physical Location & Seq
Forward (+)
37305360 .. 37309727
4368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G016760.1

Sequence Viewer

Length: 639 bp
ATGGTTTTCAAACAATTTGACATCGCAAGTCATTATTCTCCAAAACCGATCTCCACTCCATTCAGGAATTCTGAACACTTCCCTGAGCACATATGGGGTCAGGGCGATTGCTTCCTTAACATTATTCGAGGAAACGTTTGTCTAAATAGAAACGGGTGGTATGGGAAAAATTGGAGGGCAGAAACTACTCGGCAGCGTGGTACTCTAACTGCCCCCGTTTCTCTCTCTTCGACCATGGTGCCTAATCATGGGGGTGCAGGCATACTCGGGGCTGCACCATCAGCAAGTCGTTTTCGACTGAACCCGGATGCACCGGCATTTCACCCCAGGATTAACCGGGCACCAGAAGAGGATAGGTGCTGCTTCCTCACATTCTCAAACGGTTATCCTATTGAGGAGCTCAGCATCATATCGTTCTTCAACGAGAAATTTGGCCCTAACTGTGTGGAGAGGGTGTACGTACACCGGCCAGTTGGGCAGCCACCACTGTTCGGAAAGGTTGTGTTCCGATCAGTACTTATGCCGGCGCTGGTCCTTCAGGGCAAGGATTTACAAAAGTATCTGGTAGATGGTAATCCGATGTGGTGCAAGAAATATGACAGAGAGAAGGCTCAGCAAAGTAGACAATTAGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.06

Weight (kDa)

9.34

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 238, 340
AccI GTMKAC 1 cut(s) 622
AclI AACGTT 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 467
AcsI RAATTY 2 cut(s) 67, 428
AcuI CTGAAG 1 cut(s) 521
AfaI GTAC 4 cut(s) 202, 458, 462, 516
AfiI CCNNNNNNNGG 2 cut(s) 248, 491
AgsI TTSAA 2 cut(s) 10, 421
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
Alw21I GWGCWC 2 cut(s) 90, 402
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 2 cut(s) 433, 467
ApeKI GCWGC 4 cut(s) 193, 272, 360, 478
ApoI RAATTY 2 cut(s) 67, 428
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 2 cut(s) 434, 532
AsuC2I CCSGG 2 cut(s) 305, 338
AsuHPI GGTGA 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 532
BaeGI GKGCMC 1 cut(s) 343
BaeI ACNNNNGTAYC 2 cut(s) 542, 575
BanI GGYRCC 2 cut(s) 238, 340
BanII GRGCYC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 90, 402
BbvI GCAGC 4 cut(s) 205, 259, 347, 490
BccI CCATC 2 cut(s) 286, 563
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 2 cut(s) 305, 338
BfoI RGCGCY 1 cut(s) 530
BglI GCCNNNNNGGC 1 cut(s) 475
BisI GCNGC 4 cut(s) 194, 273, 361, 479
BlpI GCTNAGC 2 cut(s) 401, 612
BlsI GCNGC 4 cut(s) 195, 274, 362, 480
BmcAI AGTACT 1 cut(s) 516
Bme1390I CCNGG 3 cut(s) 305, 328, 338
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 434, 532
BmiI GGNNCC 2 cut(s) 240, 342
BmrFI CCNGG 3 cut(s) 305, 328, 338
BmsI GCATC 2 cut(s) 298, 414
Bpu10I CCTNAGC 1 cut(s) 84
Bpu1102I GCTNAGC 2 cut(s) 401, 612
BpuMI CCSGG 2 cut(s) 305, 338
BsaAI YACGTR 1 cut(s) 460
BsaBI GATNNNNATC 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 234, 326
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 491
Bse118I RCCGGY 3 cut(s) 313, 465, 523
Bse1I ACTGG 1 cut(s) 470
Bse8I GATNNNNATC 1 cut(s) 573
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 234, 326
BseGI GGATG 1 cut(s) 313
BseJI GATNNNNATC 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 248, 491
BseMII CTCAG 3 cut(s) 75, 415, 626
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 1 cut(s) 410
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 4 cut(s) 205, 259, 347, 490
BsgI GTGCAG 2 cut(s) 258, 276
BshFI GGCC 2 cut(s) 435, 469
BshNI GGYRCC 2 cut(s) 238, 340
BsiHKAI GWGCWC 2 cut(s) 90, 402
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 5 cut(s) 305, 314, 337, 466, 524
BslI CCNNNNNNNGG 2 cut(s) 248, 491
BsnI GGCC 2 cut(s) 435, 469
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 3 cut(s) 90, 343, 402
Bsp143I GATC 2 cut(s) 48, 509
Bsp1720I GCTNAGC 2 cut(s) 401, 612
Bsp19I CCATGG 1 cut(s) 234
BspANI GGCC 2 cut(s) 435, 469
BspCNI CTCAG 3 cut(s) 76, 414, 625
BspLI GGNNCC 2 cut(s) 240, 342
BspT107I GGYRCC 2 cut(s) 238, 340
BsrFI RCCGGY 3 cut(s) 313, 465, 523
BsrI ACTGG 1 cut(s) 470
BssAI RCCGGY 3 cut(s) 313, 465, 523
BssECI CCNNGG 2 cut(s) 234, 326
BssMI GATC 2 cut(s) 48, 509
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 383, 443, 489
Bst6I CTCTTC 2 cut(s) 232, 342
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 259, 525
BstDEI CTNAG 4 cut(s) 84, 401, 612, 636
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 313
BstH2I RGCGCY 1 cut(s) 530
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 2 cut(s) 51, 512
BstMBI GATC 2 cut(s) 48, 509
BstMWI GCNNNNNNNGC 2 cut(s) 281, 475
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 3 cut(s) 303, 326, 336
BstSLI GKGCMC 1 cut(s) 343
BstSNI TACGTA 1 cut(s) 460
BstV1I GCAGC 4 cut(s) 205, 259, 347, 490
BsuRI GGCC 2 cut(s) 435, 469
BtgI CCRYGG 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 485
Cac8I GCNNGC 2 cut(s) 259, 525
CfoI GCGC 1 cut(s) 529
Cfr10I RCCGGY 3 cut(s) 313, 465, 523
Cfr13I GGNCC 2 cut(s) 434, 532
Csp6I GTAC 4 cut(s) 201, 457, 461, 515
CviAII CATG 2 cut(s) 235, 248
CviJI RGCY 6 cut(s) 272, 400, 435, 469, 481, 611
CviKI_1 RGCY 6 cut(s) 272, 400, 435, 469, 481, 611
CviQI GTAC 4 cut(s) 201, 457, 461, 515
DdeI CTNAG 4 cut(s) 84, 401, 612, 636
DpnI GATC 2 cut(s) 50, 511
DpnII GATC 2 cut(s) 48, 509
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 2 cut(s) 232, 342
EarI CTCTTC 2 cut(s) 232, 342
Ecl136II GAGCTC 1 cut(s) 400
Eco105I TACGTA 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 532
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 238, 251
FaiI YATR 9 cut(s) 92, 94, 162, 236, 249, 263, 410, 521, 597
FatI CATG 2 cut(s) 234, 247
FauNDI CATATG 1 cut(s) 92
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 4 cut(s) 194, 273, 361, 479
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 4 cut(s) 194, 273, 361, 479
GlaI GCGC 1 cut(s) 528
GluI GCNGC 4 cut(s) 194, 273, 361, 479
HaeII RGCGCY 1 cut(s) 530
HaeIII GGCC 2 cut(s) 435, 469
HapII CCGG 5 cut(s) 305, 314, 337, 466, 524
HhaI GCGC 1 cut(s) 529
Hin1II CATG 2 cut(s) 238, 251
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HinfI GANTC 1 cut(s) 632
HpaII CCGG 5 cut(s) 305, 314, 337, 466, 524
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 3 cut(s) 457, 463, 623
Hpy188I TCNGA 4 cut(s) 73, 494, 509, 579
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 3 cut(s) 457, 463, 623
HpyAV CCTTC 2 cut(s) 545, 601
HpyCH4III ACNGT 3 cut(s) 383, 443, 489
HpyCH4IV ACGT 2 cut(s) 135, 459
HpyCH4V TGCA 4 cut(s) 257, 275, 311, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 475
HpyF3I CTNAG 4 cut(s) 84, 401, 612, 636
HpySE526I ACGT 2 cut(s) 135, 459
Hsp92II CATG 2 cut(s) 238, 251
HspAI GCGC 1 cut(s) 527
KroI GCCGGC 1 cut(s) 523
KroNI GCCGGC 1 cut(s) 525
Kzo9I GATC 2 cut(s) 48, 509
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 4 cut(s) 205, 259, 347, 490
LweI GCATC 2 cut(s) 298, 414
MaeII ACGT 2 cut(s) 135, 459
MalI GATC 2 cut(s) 50, 511
MboI GATC 2 cut(s) 48, 509
MboII GAAGA 3 cut(s) 219, 359, 409
MhlI GDGCHC 3 cut(s) 90, 343, 402
MluCI AATT 5 cut(s) 14, 67, 169, 428, 626
MnlI CCTC 6 cut(s) 122, 168, 343, 377, 388, 444
MroNI GCCGGC 1 cut(s) 523
MseI TTAA 2 cut(s) 117, 333
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 5 cut(s) 305, 314, 337, 466, 524
MspR9I CCNGG 3 cut(s) 305, 328, 338
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 2 cut(s) 281, 475
NaeI GCCGGC 1 cut(s) 525
NciI CCSGG 2 cut(s) 305, 338
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 92
NdeII GATC 2 cut(s) 48, 509
NgoMIV GCCGGC 1 cut(s) 523
NlaIII CATG 2 cut(s) 238, 251
NlaIV GGNNCC 2 cut(s) 240, 342
NmeAIII GCCGAG 1 cut(s) 169
PdiI GCCGGC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 632
PkrI GCNGC 4 cut(s) 195, 274, 362, 480
Ppu21I YACGTR 1 cut(s) 460
Psp124BI GAGCTC 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 2 cut(s) 240, 342
PspPI GGNCC 2 cut(s) 434, 532
RsaI GTAC 4 cut(s) 202, 458, 462, 516
RsaNI GTAC 4 cut(s) 201, 457, 461, 515
RseI CAYNNNNRTG 1 cut(s) 252
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 117, 333
SatI GCNGC 4 cut(s) 194, 273, 361, 479
Sau3AI GATC 2 cut(s) 48, 509
Sau96I GGNCC 2 cut(s) 434, 532
ScaI AGTACT 1 cut(s) 516
ScrFI CCNGG 3 cut(s) 305, 328, 338
SduI GDGCHC 3 cut(s) 90, 343, 402
SetI ASST 5 cut(s) 138, 359, 402, 462, 501
SfaNI GCATC 2 cut(s) 298, 414
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 252
SnaBI TACGTA 1 cut(s) 460
Sse9I AATT 5 cut(s) 14, 67, 169, 428, 626
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 3 cut(s) 303, 326, 336
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 3 cut(s) 383, 443, 489
TaiI ACGT 2 cut(s) 138, 462
TaqI TCGA 3 cut(s) 127, 230, 295
TasI AATT 5 cut(s) 14, 67, 169, 428, 626
TatI WGTACW 1 cut(s) 514
TfiI GAWTC 1 cut(s) 632
Tru1I TTAA 2 cut(s) 117, 333
Tru9I TTAA 2 cut(s) 117, 333
TscAI CASTG 1 cut(s) 492
TseI GCWGC 4 cut(s) 193, 272, 360, 478
TspRI CASTG 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 2 cut(s) 67, 428
XmiI GTMKAC 1 cut(s) 622
ZrmI AGTACT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.