Rh1CG293200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009136
Physical Location & Seq
Forward (+)
56605274 .. 56606219
946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG293200.1

Sequence Viewer

Length: 270 bp
ATGGGAAAATTGGAGAGCAGAAGCTACTCGGCGGAGTGGTGCTCTAACTGGCCCTGGAAATTTGGCCCCAACTGTGTGGAGAGGGTATACGTACATCGGCCAGTTGGGCAGACACCACTGTTCGGAAAGGTTGTGTTCCGATCAGTACTCATGCCGGCGCTGGTCCTTGAGGGCAAGGATTTGCAAAAGTATCTGGTAGATGGTTATCCGATATGGTGCAAAAAATATGACAGAAAGAAGGCTCAGCAAAGTAGACAATTAGAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.45

Weight (kDa)

9.55

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 87, 253
AciI CCGC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 98
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 2 cut(s) 93, 147
AfiI CCNNNNNNNGG 1 cut(s) 122
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw21I GWGCWC 1 cut(s) 44
AoxI GGCC 3 cut(s) 50, 64, 98
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 51, 65, 163
AvaII GGWCC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 44
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 106
BlpI GCTNAGC 1 cut(s) 243
BmcAI AGTACT 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 51, 65, 163
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 55
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu1102I GCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 53, 101
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 53
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 2 cut(s) 53, 101
BshFI GGCC 3 cut(s) 52, 66, 100
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 122
BsnI GGCC 3 cut(s) 52, 66, 100
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 140
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 1 cut(s) 32
BspANI GGCC 3 cut(s) 52, 66, 100
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 2 cut(s) 53, 101
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 140
BssNAI GTATAC 1 cut(s) 88
Bst1107I GTATAC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 2 cut(s) 74, 120
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 243, 267
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstSNI TACGTA 1 cut(s) 91
BstXI CCANNNNNNTGG 1 cut(s) 76
BstZ17I GTATAC 1 cut(s) 88
BsuRI GGCC 3 cut(s) 52, 66, 100
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 51, 65, 163
Csp6I GTAC 2 cut(s) 92, 146
CviAII CATG 1 cut(s) 151
CviJI RGCY 5 cut(s) 24, 52, 66, 100, 242
CviKI_1 RGCY 5 cut(s) 24, 52, 66, 100, 242
CviQI GTAC 2 cut(s) 92, 146
DdeI CTNAG 2 cut(s) 243, 267
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 98
EciI GGCGGA 1 cut(s) 47
Eco105I TACGTA 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 53
FaeI CATG 1 cut(s) 154
FaiI YATR 4 cut(s) 88, 152, 214, 228
FatI CATG 1 cut(s) 150
FblI GTMKAC 2 cut(s) 87, 253
GlaI GCGC 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 3 cut(s) 52, 66, 100
HapII CCGG 1 cut(s) 155
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HpaII CCGG 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 88, 254
Hpy188I TCNGA 3 cut(s) 125, 140, 210
Hpy8I GTNNAC 2 cut(s) 88, 254
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 2 cut(s) 74, 120
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 184, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 2 cut(s) 243, 267
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Kzo9I GATC 1 cut(s) 140
LpnPI CCDG 7 cut(s) 34, 40, 67, 114, 146, 168, 179
MaeII ACGT 1 cut(s) 90
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 3 cut(s) 8, 59, 257
MnlI CCTC 2 cut(s) 75, 163
MroNI GCCGGC 1 cut(s) 154
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 106
NaeI GCCGGC 1 cut(s) 156
NdeII GATC 1 cut(s) 140
NgoMIV GCCGGC 1 cut(s) 154
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 67
NmeAIII GCCGAG 1 cut(s) 8
PdiI GCCGGC 1 cut(s) 156
Ppu21I YACGTR 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 3 cut(s) 51, 65, 163
RsaI GTAC 2 cut(s) 93, 147
RsaNI GTAC 2 cut(s) 92, 146
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 3 cut(s) 51, 65, 163
ScaI AGTACT 1 cut(s) 147
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 44
SetI ASST 4 cut(s) 26, 93, 132, 268
SinI GGWCC 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
SnaBI TACGTA 1 cut(s) 91
Sse9I AATT 3 cut(s) 8, 59, 257
SsiI CCGC 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 74, 120
TaiI ACGT 1 cut(s) 93
TasI AATT 3 cut(s) 8, 59, 257
TatI WGTACW 1 cut(s) 145
TscAI CASTG 1 cut(s) 123
TspRI CASTG 1 cut(s) 123
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 59
XmiI GTMKAC 2 cut(s) 87, 253
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.