AT2G45210

Auxin-induced protein X10A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015259
Physical Location & Seq
Forward (+)
18641563 .. 18642739
1177 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45210.1

Sequence Viewer

Length: 489 bp
ATGAGGAAGATCATAGGGTTTAGAATCGGGAGACGAGTCTCAAGATGGATCTTTCGCAAAACCCGGATCCAACGTTCAGGATACAACCGGATACACTCGACCCAGCAAGCTTGCATGCTGATGAGACCATTAGCCAAACTCAAAAGTTGGGGCCAACGTCTCAAGCAAAGTTTCAGACGCAGGTCTACGAGAAGATCCGCATACATACCCGTTGATCATAAGAAAGCCGACCCGGTTCCAAGGGGACACTTAGCTATCTACGTGGGTCAAAAAGACGGCGACTGTCATAGAGTTTTGGTACCCATCGTTTACTTTAACCATCCTTTGTTCGGTGAGCTGCTTCGAGAAGCCGAAAAAGAGTACGGATTTTGCCACGAAGGAGGTATCACTATTCCTTGTCTGTATTCAGATTTCGAACGGGTCAAGACCCGGATCGCATCGGGGTCAAGTTCTCGGGTATTTCCATGGGGCCGTCATTGCCGCAATTGA

Protein Analysis

162

Amino Acids

19.04

Weight (kDa)

11.04

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 54 - 142 1.4e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45210 AT3G60690
fragaria_vesca FvH4_7g11280 FvH4_7g11280
malus_domestica MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica Prupe.2G140600_v2.0.a1
pyrus_communis pycom07g10730
rosa_chinensis RchiOBHm_Chr1g0349431
rosa_laevigata RLG00000028549
rosa_multiflora Rmu_sc0002495.1_g000006
rosa_rugosa Rorug01G0203800
rosa_samantha Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana Rw1G018780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 171
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 298
AccI GTMKAC 1 cut(s) 185
AciI CCGC 2 cut(s) 198, 481
AclI AACGTT 1 cut(s) 73
AclWI GGATC 5 cut(s) 56, 61, 74, 189, 440
AfaI GTAC 2 cut(s) 300, 362
AfiI CCNNNNNNNGG 1 cut(s) 329
AloI GAACNNNNNNTCC 2 cut(s) 58, 90
AluBI AGCT 3 cut(s) 110, 254, 337
AluI AGCT 3 cut(s) 110, 254, 337
Alw26I GTCTC 4 cut(s) 25, 43, 118, 164
AlwI GGATC 5 cut(s) 56, 61, 74, 189, 440
Ama87I CYCGRG 1 cut(s) 453
AoxI GGCC 2 cut(s) 151, 469
ApeKI GCWGC 1 cut(s) 337
Asp718I GGTACC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 151, 469
AsuC2I CCSGG 3 cut(s) 64, 233, 430
AsuHPI GGTGA 1 cut(s) 344
AsuII TTCGAA 1 cut(s) 414
AvaI CYCGRG 1 cut(s) 453
BamHI GGATCC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 324
BccI CCATC 3 cut(s) 39, 311, 327
BceAI ACGGC 2 cut(s) 292, 456
BciVI GTATCC 2 cut(s) 74, 84
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 3 cut(s) 64, 233, 430
BcoDI GTCTC 4 cut(s) 25, 43, 118, 164
BfuAI ACCTGC 1 cut(s) 171
BfuI GTATCC 2 cut(s) 74, 84
BisI GCNGC 2 cut(s) 338, 481
BlsI GCNGC 2 cut(s) 339, 482
Bme1390I CCNGG 3 cut(s) 64, 233, 430
BmeT110I CYCGRG 1 cut(s) 453
BmgT120I GGNCC 2 cut(s) 151, 469
BmiI GGNNCC 5 cut(s) 68, 152, 237, 300, 470
BmrFI CCNGG 3 cut(s) 64, 233, 430
BmsI GCATC 1 cut(s) 446
BoxI GACNNNNGTC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 25, 146
BpuMI CCSGG 3 cut(s) 64, 233, 430
BsaAI YACGTR 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 239, 464
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 239, 464
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 475
BseXI GCAGC 1 cut(s) 324
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 2 cut(s) 153, 471
BshNI GGYRCC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 453
BsiSI CCGG 4 cut(s) 64, 88, 233, 430
BslFI GGGAC 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 4 cut(s) 25, 43, 118, 164
BsmBI CGTCTC 2 cut(s) 25, 164
BsmFI GGGAC 1 cut(s) 258
BsnI GGCC 2 cut(s) 153, 471
Bso31I GGTCTC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 453
Bsp119I TTCGAA 1 cut(s) 414
Bsp143I GATC 6 cut(s) 9, 48, 66, 194, 214, 432
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 2 cut(s) 198, 481
BspANI GGCC 2 cut(s) 153, 471
BspLI GGNNCC 5 cut(s) 68, 152, 237, 300, 470
BspMI ACCTGC 1 cut(s) 171
BspPI GGATC 5 cut(s) 56, 61, 74, 189, 440
BspT104I TTCGAA 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 475
BssECI CCNNGG 2 cut(s) 239, 464
BssMI GATC 6 cut(s) 9, 48, 66, 194, 214, 432
BssT1I CCWWGG 2 cut(s) 239, 464
Bst4CI ACNGT 1 cut(s) 284
BstBAI YACGTR 1 cut(s) 262
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 3 cut(s) 108, 112, 116
BstDEI CTNAG 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 6 cut(s) 12, 51, 69, 197, 217, 435
BstMAI GTCTC 4 cut(s) 25, 43, 118, 164
BstMBI GATC 6 cut(s) 9, 48, 66, 194, 214, 432
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 118
BstPAI GACNNNNGTC 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 62, 231, 428
BstV1I GCAGC 1 cut(s) 324
BstX2I RGATCY 3 cut(s) 48, 66, 194
BstYI RGATCY 3 cut(s) 48, 66, 194
BsuI GTATCC 2 cut(s) 74, 84
BsuRI GGCC 2 cut(s) 153, 471
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 1 cut(s) 319
BveI ACCTGC 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 108, 112, 116
Cfr13I GGNCC 2 cut(s) 151, 469
CseI GACGC 1 cut(s) 186
Csp6I GTAC 2 cut(s) 299, 361
CviAII CATG 2 cut(s) 115, 465
CviJI RGCY 8 cut(s) 110, 134, 153, 227, 254, 337, 350, 471
CviKI_1 RGCY 8 cut(s) 110, 134, 153, 227, 254, 337, 350, 471
CviQI GTAC 2 cut(s) 299, 361
DdeI CTNAG 1 cut(s) 250
DpnI GATC 6 cut(s) 11, 50, 68, 196, 216, 434
DpnII GATC 6 cut(s) 9, 48, 66, 194, 214, 432
Eco130I CCWWGG 2 cut(s) 239, 464
Eco31I GGTCTC 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 239, 464
ErhI CCWWGG 2 cut(s) 239, 464
Esp3I CGTCTC 2 cut(s) 25, 164
FaeI CATG 2 cut(s) 118, 468
FaiI YATR 7 cut(s) 14, 116, 202, 206, 219, 288, 466
FaqI GGGAC 1 cut(s) 258
FatI CATG 2 cut(s) 114, 464
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 2 cut(s) 338, 481
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 2 cut(s) 338, 481
GluI GCNGC 2 cut(s) 338, 481
GsaI CCCAGC 1 cut(s) 106
HaeIII GGCC 2 cut(s) 153, 471
HapII CCGG 4 cut(s) 64, 88, 233, 430
HgaI GACGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 118, 468
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 2 cut(s) 24, 36
HpaII CCGG 4 cut(s) 64, 88, 233, 430
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 186, 310
Hpy188I TCNGA 2 cut(s) 176, 409
Hpy188III TCNNGA 5 cut(s) 28, 42, 78, 344, 424
Hpy8I GTNNAC 2 cut(s) 186, 310
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4IV ACGT 3 cut(s) 73, 157, 261
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 3 cut(s) 73, 157, 261
Hsp92II CATG 2 cut(s) 118, 468
KpnI GGTACC 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 6 cut(s) 9, 48, 66, 194, 214, 432
LpnPI CCDG 7 cut(s) 63, 77, 101, 116, 166, 246, 443
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 1 cut(s) 446
MaeII ACGT 3 cut(s) 73, 157, 261
MalI GATC 6 cut(s) 11, 50, 68, 196, 216, 434
MboI GATC 6 cut(s) 9, 48, 66, 194, 214, 432
MboII GAAGA 2 cut(s) 19, 204
MfeI CAATTG 1 cut(s) 484
MflI RGATCY 3 cut(s) 48, 66, 194
MluCI AATT 1 cut(s) 484
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 1 cut(s) 374
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 4 cut(s) 64, 88, 233, 430
MspR9I CCNGG 3 cut(s) 64, 233, 430
MunI CAATTG 1 cut(s) 484
MwoI GCNNNNNNNGC 1 cut(s) 477
NciI CCSGG 3 cut(s) 64, 233, 430
NcoI CCATGG 1 cut(s) 464
NdeII GATC 6 cut(s) 9, 48, 66, 194, 214, 432
NlaIII CATG 2 cut(s) 118, 468
NlaIV GGNNCC 5 cut(s) 68, 152, 237, 300, 470
NspI RCATGY 1 cut(s) 118
NspV TTCGAA 1 cut(s) 414
PaeI GCATGC 1 cut(s) 118
PfeI GAWTC 1 cut(s) 24
PkrI GCNGC 2 cut(s) 339, 482
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 262
PshAI GACNNNNGTC 1 cut(s) 181
Psp1406I AACGTT 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 102
PspN4I GGNNCC 5 cut(s) 68, 152, 237, 300, 470
PspPI GGNCC 2 cut(s) 151, 469
PsuI RGATCY 3 cut(s) 48, 66, 194
RsaI GTAC 2 cut(s) 300, 362
RsaNI GTAC 2 cut(s) 299, 361
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 338, 481
Sau3AI GATC 6 cut(s) 9, 48, 66, 194, 214, 432
Sau96I GGNCC 2 cut(s) 151, 469
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 3 cut(s) 64, 233, 430
SetI ASST 8 cut(s) 76, 112, 160, 185, 256, 264, 339, 385
SfaNI GCATC 1 cut(s) 446
SfuI TTCGAA 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 119
SmlI CTYRAG 2 cut(s) 40, 161
SmoI CTYRAG 2 cut(s) 40, 161
SphI GCATGC 1 cut(s) 118
Sse9I AATT 1 cut(s) 484
SsiI CCGC 2 cut(s) 198, 481
StyD4I CCNGG 3 cut(s) 62, 231, 428
StyI CCWWGG 2 cut(s) 239, 464
TaaI ACNGT 1 cut(s) 284
TaiI ACGT 3 cut(s) 76, 160, 264
TaqI TCGA 3 cut(s) 98, 343, 414
TasI AATT 1 cut(s) 484
TauI GCSGC 1 cut(s) 483
TfiI GAWTC 1 cut(s) 24
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 1 cut(s) 337
TspGWI ACGGA 1 cut(s) 378
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.