FvH4_7g11280

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015259
Physical Location & Seq
Forward (+)
10507224 .. 10508808
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11280.t1

Sequence Viewer

Length: 588 bp
ATGACAAAAATCAGAGGATTCAAGCTCGGAAAACGACTCTGCCGGGTCACCCGATGGTTCTTCCGGAAACCCACGACCCGACCCGGATACCACCGTCTCAGCCGTCCGACTTCTTCAGCTCCGCCGTGCAAGTACAAGCCGATCGCGAAGCTACTCACCTGGGGTCGCCAGCTGACGACCGGAGCAAAGTCTCTGTGTTGCAGCAGACCCGGGTCGGGTTATATGCAGCTGGGTCAGAACCCGGTTGAGGAAACCAAGCCGGTGACTGTCCCCAAGGGACACCTGGCGGTCTACGTGGGACAAAAAGACGGCGACTTTCACCGTGTTCTGGTGCCCGTGATTTACTTCAACCACCCGCTATTCGGTCAGCTTCTGAAAGAAGCCGAGCAAGAATACGGGTTCGCCCACCCGGGTGGGATCACCATACCGTGCCCGATTTCGGACTTTGAAAAAGTCAAGACCCGGATCGCTGCCGGGTCGGGTCACCGGAGGTGTAGGTTTGGTGGCTTAAATGGAAATTGCAAATCTGAAAATTCTGGGGAAGAAGATGAAGTGCAGGCTAGGTTGCAGAGTCACGACTCATCATGA

Protein Analysis

196

Amino Acids

21.74

Weight (kDa)

9.85

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 82 - 153 1.5e-19 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45210 AT3G60690
fragaria_vesca FvH4_7g11280 FvH4_7g11280
malus_domestica MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica Prupe.2G140600_v2.0.a1
pyrus_communis pycom07g10730
rosa_chinensis RchiOBHm_Chr1g0349431
rosa_laevigata RLG00000028549
rosa_multiflora Rmu_sc0002495.1_g000006
rosa_rugosa Rorug01G0203800
rosa_samantha Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana Rw1G018780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 146
AccIII TCCGGA 1 cut(s) 63
AciI CCGC 3 cut(s) 122, 287, 356
AclWI GGATC 2 cut(s) 425, 473
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 5 cut(s) 215, 247, 328, 362, 439
AgsI TTSAA 3 cut(s) 22, 349, 449
AjnI CCWGG 2 cut(s) 158, 282
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 6 cut(s) 25, 119, 151, 172, 229, 370
AluI AGCT 6 cut(s) 25, 119, 151, 172, 229, 370
Alw26I GTCTC 2 cut(s) 101, 195
AlwI GGATC 2 cut(s) 425, 473
AlwNI CAGNNNCTG 1 cut(s) 373
Ama87I CYCGRG 2 cut(s) 209, 409
Aor13HI TCCGGA 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 201, 226, 470
ApoI RAATTY 1 cut(s) 532
AsuC2I CCSGG 9 cut(s) 44, 84, 210, 211, 242, 410, 411, 463, 475
AsuHPI GGTGA 6 cut(s) 40, 148, 274, 311, 412, 476
AvaI CYCGRG 2 cut(s) 209, 409
BaeGI GKGCMC 2 cut(s) 336, 434
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BanI GGYRCC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 213, 238, 457
BccI CCATC 1 cut(s) 48
BceAI ACGGC 3 cut(s) 87, 109, 325
BciT130I CCWGG 2 cut(s) 160, 284
BciVI GTATCC 1 cut(s) 80
BcnI CCSGG 9 cut(s) 44, 84, 210, 211, 242, 410, 411, 463, 475
BcoDI GTCTC 2 cut(s) 101, 195
BfaI CTAG 1 cut(s) 561
BfuI GTATCC 1 cut(s) 80
BisI GCNGC 3 cut(s) 202, 227, 471
BlsI GCNGC 3 cut(s) 203, 228, 472
BmeT110I CYCGRG 2 cut(s) 209, 409
BmiI GGNNCC 1 cut(s) 333
BoxI GACNNNNGTC 1 cut(s) 211
BpuMI CCSGG 9 cut(s) 44, 84, 210, 211, 242, 410, 411, 463, 475
BsaAI YACGTR 1 cut(s) 295
BsaJI CCNNGG 4 cut(s) 159, 209, 273, 409
BsaWI WCCGGW 3 cut(s) 63, 179, 486
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 247, 328, 362, 439
Bse118I RCCGGY 1 cut(s) 259
BseAI TCCGGA 1 cut(s) 63
BseBI CCWGG 2 cut(s) 160, 284
BseDI CCNNGG 4 cut(s) 159, 209, 273, 409
BseLI CCNNNNNNNGG 5 cut(s) 215, 247, 328, 362, 439
BseMII CTCAG 1 cut(s) 112
BseSI GKGCMC 2 cut(s) 336, 434
BseXI GCAGC 3 cut(s) 213, 238, 457
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 146
Bsh1285I CGRYCG 2 cut(s) 144, 180
BshNI GGYRCC 1 cut(s) 331
BsiEI CGRYCG 2 cut(s) 144, 180
BsiHKCI CYCGRG 2 cut(s) 209, 409
BslFI GGGAC 3 cut(s) 254, 291, 312
BslI CCNNNNNNNGG 5 cut(s) 215, 247, 328, 362, 439
BsmAI GTCTC 2 cut(s) 101, 195
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 3 cut(s) 254, 291, 312
BsoBI CYCGRG 2 cut(s) 209, 409
Bsp1286I GDGCHC 2 cut(s) 336, 434
Bsp13I TCCGGA 1 cut(s) 63
Bsp143I GATC 3 cut(s) 141, 417, 465
Bsp68I TCGCGA 1 cut(s) 146
BspACI CCGC 3 cut(s) 122, 287, 356
BspCNI CTCAG 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 63
BspFNI CGCG 1 cut(s) 146
BspHI TCATGA 1 cut(s) 584
BspLI GGNNCC 1 cut(s) 333
BspPI GGATC 2 cut(s) 425, 473
BspT107I GGYRCC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 4 cut(s) 159, 209, 273, 409
BssMI GATC 3 cut(s) 141, 417, 465
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 160, 284
Bst4CI ACNGT 4 cut(s) 95, 268, 323, 429
BstBAI YACGTR 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 170, 558
BstDEI CTNAG 1 cut(s) 98
BstEII GGTNACC 2 cut(s) 46, 482
BstFNI CGCG 1 cut(s) 146
BstKTI GATC 3 cut(s) 144, 420, 468
BstMAI GTCTC 2 cut(s) 101, 195
BstMBI GATC 3 cut(s) 141, 417, 465
BstMCI CGRYCG 2 cut(s) 144, 180
BstNI CCWGG 2 cut(s) 160, 284
BstPAI GACNNNNGTC 1 cut(s) 211
BstPI GGTNACC 2 cut(s) 46, 482
BstSLI GKGCMC 2 cut(s) 336, 434
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 213, 238, 457
BstXI CCANNNNNNTGG 1 cut(s) 413
BsuI GTATCC 1 cut(s) 80
BtuMI TCGCGA 1 cut(s) 146
Cac8I GCNNGC 2 cut(s) 170, 558
CaiI CAGNNNCTG 1 cut(s) 373
CciI TCATGA 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 259
Cfr9I CCCGGG 2 cut(s) 209, 409
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 585
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 1 cut(s) 98
DpnI GATC 3 cut(s) 143, 419, 467
DpnII GATC 3 cut(s) 141, 417, 465
EciI GGCGGA 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 99
Eco88I CYCGRG 2 cut(s) 209, 409
Eco91I GGTNACC 2 cut(s) 46, 482
EcoO65I GGTNACC 2 cut(s) 46, 482
EcoRII CCWGG 2 cut(s) 158, 282
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 1 cut(s) 588
FaiI YATR 4 cut(s) 222, 224, 425, 586
FaqI GGGAC 3 cut(s) 254, 291, 312
FatI CATG 1 cut(s) 584
FauI CCCGC 1 cut(s) 363
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 3 cut(s) 202, 227, 471
Fsp4HI GCNGC 3 cut(s) 202, 227, 471
FspBI CTAG 1 cut(s) 561
GluI GCNGC 3 cut(s) 202, 227, 471
GsaI CCCAGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 588
HinfI GANTC 4 cut(s) 18, 36, 571, 578
HphI GGTGA 6 cut(s) 40, 148, 274, 311, 412, 476
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 7 cut(s) 14, 29, 108, 237, 375, 442, 529
Hpy188III TCNNGA 5 cut(s) 64, 145, 457, 575, 585
Hpy8I GTNNAC 1 cut(s) 292
HpyCH4III ACNGT 4 cut(s) 95, 268, 323, 429
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 6 cut(s) 129, 201, 226, 522, 556, 568
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 294
Hsp92II CATG 1 cut(s) 588
Kpn2I TCCGGA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 141, 417, 465
LmnI GCTCC 2 cut(s) 124, 182
Lsp1109I GCAGC 3 cut(s) 213, 238, 457
MaeI CTAG 1 cut(s) 561
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 4 cut(s) 46, 262, 482, 572
MalI GATC 3 cut(s) 143, 419, 467
MboI GATC 3 cut(s) 141, 417, 465
MboII GAAGA 4 cut(s) 52, 105, 554, 557
MhlI GDGCHC 2 cut(s) 336, 434
MluCI AATT 2 cut(s) 517, 532
MlyI GAGTC 3 cut(s) 30, 572, 580
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 3 cut(s) 8, 241, 483
MroI TCCGGA 1 cut(s) 63
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 2 cut(s) 172, 229
MvaI CCWGG 2 cut(s) 160, 284
MvnI CGCG 1 cut(s) 146
NciI CCSGG 9 cut(s) 44, 84, 210, 211, 242, 410, 411, 463, 475
NdeII GATC 3 cut(s) 141, 417, 465
NlaIII CATG 1 cut(s) 588
NlaIV GGNNCC 1 cut(s) 333
NmeAIII GCCGAG 1 cut(s) 409
NmuCI GTSAC 4 cut(s) 46, 262, 482, 572
NruI TCGCGA 1 cut(s) 146
OliI CACNNNNGTG 1 cut(s) 411
PagI TCATGA 1 cut(s) 584
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 3 cut(s) 203, 228, 472
Ple19I CGATCG 1 cut(s) 144
PleI GAGTC 3 cut(s) 30, 572, 579
PpsI GAGTC 3 cut(s) 30, 572, 579
Ppu21I YACGTR 1 cut(s) 295
PshAI GACNNNNGTC 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 158, 282
PspEI GGTNACC 2 cut(s) 46, 482
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 2 cut(s) 158, 282
PspN4I GGNNCC 1 cut(s) 333
PstNI CAGNNNCTG 1 cut(s) 373
PvuI CGATCG 1 cut(s) 144
PvuII CAGCTG 2 cut(s) 172, 229
RruI TCGCGA 1 cut(s) 146
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 411
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 3 cut(s) 202, 227, 471
Sau3AI GATC 3 cut(s) 141, 417, 465
SchI GAGTC 3 cut(s) 30, 572, 580
SduI GDGCHC 2 cut(s) 336, 434
SmaI CCCGGG 2 cut(s) 211, 411
SmiMI CAYNNNNRTG 1 cut(s) 411
Sse9I AATT 2 cut(s) 517, 532
SsiI CCGC 3 cut(s) 122, 287, 356
SspMI CTAG 1 cut(s) 561
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 4 cut(s) 95, 268, 323, 429
TaiI ACGT 1 cut(s) 297
TaqII GACCGA 1 cut(s) 353
TasI AATT 2 cut(s) 517, 532
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 1 cut(s) 18
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TseFI GTSAC 4 cut(s) 46, 262, 482, 572
TseI GCWGC 3 cut(s) 201, 226, 470
Tsp45I GTSAC 4 cut(s) 46, 262, 482, 572
TspDTI ATGAA 1 cut(s) 564
TspMI CCCGGG 2 cut(s) 209, 409
XapI RAATTY 1 cut(s) 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmaI CCCGGG 2 cut(s) 209, 409
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.