Rh1BG187200

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015259
Physical Location & Seq
Forward (+)
30212276 .. 30214390
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG187200.1

Sequence Viewer

Length: 513 bp
ATGAGAAAGATCAGAGGAATCAAGCTCGGAAAACGACTCTGCCGGGTCACCCGATGGTTCTTCTTCCGAAAACCCACGACCCGACCCGGATACCACCGGCTGAGCCCGCCTTCATCTCCGCCGTGCAAGTACAAGCCGATTGCCAAGCTACTCACCTGGGGTCGCCAGCTGAGTACCGGAGCTAAATCTCTATGTTGTGGTAAACCCGGGTCGGGTTATATGCAGCTGGGTCAGAACCCGGTTGAGCAAACCAAGCCGGTGACGGTCCCCAAGGGACACCTGGCGGTCTATGTGGGTCAAAAAGACGGCGACTTTCACCGTGTTTTGGTGCCTGTGATTTACTTTAACCACCCACTCTTCGGTCAGCTTCTGAAAGTGGCCGAGCAAGAATACGGGTTCACCCACCCGGGTGGAATCACCATACCATGTCCGATTTCGGACTTTGAGAGCGTCAAGACCCGGATCGCCGCCGGGTCGGGTCACCGCAGGCTGAGCTGGAAACGCAACTCATGA

Protein Analysis

170

Amino Acids

19.1

Weight (kDa)

10.48

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 82 - 152 2e-19 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015259)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45210 AT3G60690
fragaria_vesca FvH4_7g11280 FvH4_7g11280
malus_domestica MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica Prupe.2G140600_v2.0.a1
pyrus_communis pycom07g10730
rosa_chinensis RchiOBHm_Chr1g0349431
rosa_laevigata RLG00000028549
rosa_multiflora Rmu_sc0002495.1_g000006
rosa_rugosa Rorug01G0203800
rosa_samantha Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana Rw1G018780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AciI CCGC 5 cut(s) 107, 119, 284, 468, 484
AclWI GGATC 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 378
AfaI GTAC 2 cut(s) 131, 175
AfiI CCNNNNNNNGG 3 cut(s) 212, 325, 359
AjnI CCWGG 2 cut(s) 155, 279
AleI CACNNNNGTG 1 cut(s) 408
AluBI AGCT 7 cut(s) 25, 148, 169, 182, 226, 367, 495
AluI AGCT 7 cut(s) 25, 148, 169, 182, 226, 367, 495
AlwI GGATC 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 370
Ama87I CYCGRG 2 cut(s) 206, 406
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 9 cut(s) 44, 87, 207, 208, 239, 407, 408, 460, 472
AsuHPI GGTGA 7 cut(s) 40, 145, 271, 308, 391, 409, 473
AvaI CYCGRG 2 cut(s) 206, 406
AvaII GGWCC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 48
BceAI ACGGC 2 cut(s) 106, 322
BciT130I CCWGG 2 cut(s) 157, 281
BciVI GTATCC 1 cut(s) 83
BcnI CCSGG 9 cut(s) 44, 87, 207, 208, 239, 407, 408, 460, 472
BfuI GTATCC 1 cut(s) 83
BisI GCNGC 2 cut(s) 224, 468
BlpI GCTNAGC 2 cut(s) 101, 491
BlsI GCNGC 2 cut(s) 225, 469
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 2 cut(s) 206, 406
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 267, 330
Bpu1102I GCTNAGC 2 cut(s) 101, 491
BpuMI CCSGG 9 cut(s) 44, 87, 207, 208, 239, 407, 408, 460, 472
BsaJI CCNNGG 4 cut(s) 156, 206, 270, 406
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 325, 359
Bse118I RCCGGY 2 cut(s) 96, 256
BseBI CCWGG 2 cut(s) 157, 281
BseDI CCNNGG 4 cut(s) 156, 206, 270, 406
BseLI CCNNNNNNNGG 3 cut(s) 212, 325, 359
BseMII CTCAG 3 cut(s) 92, 161, 482
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 226
BshFI GGCC 1 cut(s) 380
BshNI GGYRCC 1 cut(s) 328
BsiHKCI CYCGRG 2 cut(s) 206, 406
BslFI GGGAC 2 cut(s) 251, 288
BslI CCNNNNNNNGG 3 cut(s) 212, 325, 359
BsmFI GGGAC 2 cut(s) 251, 288
BsnI GGCC 1 cut(s) 380
BsoBI CYCGRG 2 cut(s) 206, 406
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 2 cut(s) 9, 462
Bsp1720I GCTNAGC 2 cut(s) 101, 491
BspACI CCGC 5 cut(s) 107, 119, 284, 468, 484
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 3 cut(s) 93, 162, 483
BspHI TCATGA 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 267, 330
BspPI GGATC 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 328
BsrFI RCCGGY 2 cut(s) 96, 256
BssAI RCCGGY 2 cut(s) 96, 256
BssECI CCNNGG 4 cut(s) 156, 206, 270, 406
BssMI GATC 2 cut(s) 9, 462
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 157, 281
Bst4CI ACNGT 2 cut(s) 265, 320
Bst6I CTCTTC 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 107, 167, 488
BstDEI CTNAG 3 cut(s) 101, 170, 491
BstEII GGTNACC 2 cut(s) 46, 479
BstKTI GATC 2 cut(s) 12, 465
BstMBI GATC 2 cut(s) 9, 462
BstMWI GCNNNNNNNGC 4 cut(s) 106, 253, 492, 501
BstNI CCWGG 2 cut(s) 157, 281
BstPI GGTNACC 2 cut(s) 46, 479
BstV1I GCAGC 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 410
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 380
Cac8I GCNNGC 3 cut(s) 107, 167, 488
CaiI CAGNNNCTG 1 cut(s) 370
CciI TCATGA 1 cut(s) 509
Cfr10I RCCGGY 2 cut(s) 96, 256
Cfr13I GGNCC 1 cut(s) 265
Cfr9I CCCGGG 2 cut(s) 206, 406
CseI GACGC 1 cut(s) 439
Csp6I GTAC 2 cut(s) 130, 174
CviAII CATG 2 cut(s) 426, 510
CviQI GTAC 2 cut(s) 130, 174
DdeI CTNAG 3 cut(s) 101, 170, 491
DpnI GATC 2 cut(s) 11, 464
DpnII GATC 2 cut(s) 9, 462
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
EciI GGCGGA 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 265
Eco88I CYCGRG 2 cut(s) 206, 406
Eco91I GGTNACC 2 cut(s) 46, 479
EcoO65I GGTNACC 2 cut(s) 46, 479
EcoRII CCWGG 2 cut(s) 155, 279
EcoT14I CCWWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 2 cut(s) 429, 513
FaiI YATR 7 cut(s) 193, 219, 221, 291, 422, 427, 511
FaqI GGGAC 2 cut(s) 251, 288
FatI CATG 2 cut(s) 425, 509
FauI CCCGC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 224, 468
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 224, 468
GluI GCNGC 2 cut(s) 224, 468
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 380
HgaI GACGC 1 cut(s) 439
Hin1II CATG 2 cut(s) 429, 513
HinfI GANTC 3 cut(s) 18, 36, 414
HphI GGTGA 7 cut(s) 40, 145, 271, 308, 391, 409, 473
Hpy166II GTNNAC 2 cut(s) 203, 399
Hpy188I TCNGA 7 cut(s) 14, 29, 68, 234, 372, 432, 439
Hpy188III TCNNGA 2 cut(s) 454, 510
Hpy8I GTNNAC 2 cut(s) 203, 399
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 2 cut(s) 265, 320
HpyCH4V TGCA 2 cut(s) 126, 223
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 253, 492, 501
HpyF3I CTNAG 3 cut(s) 101, 170, 491
Hsp92II CATG 2 cut(s) 429, 513
Kzo9I GATC 2 cut(s) 9, 462
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 235
MaeIII GTNAC 3 cut(s) 46, 259, 479
MalI GATC 2 cut(s) 11, 464
MboI GATC 2 cut(s) 9, 462
MboII GAAGA 3 cut(s) 52, 55, 349
MhlI GDGCHC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 1 cut(s) 8
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 2 cut(s) 169, 226
MvaI CCWGG 2 cut(s) 157, 281
MwoI GCNNNNNNNGC 4 cut(s) 106, 253, 492, 501
NciI CCSGG 9 cut(s) 44, 87, 207, 208, 239, 407, 408, 460, 472
NdeII GATC 2 cut(s) 9, 462
NlaIII CATG 2 cut(s) 429, 513
NlaIV GGNNCC 2 cut(s) 267, 330
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 3 cut(s) 46, 259, 479
OliI CACNNNNGTG 1 cut(s) 408
PagI TCATGA 1 cut(s) 509
PfeI GAWTC 2 cut(s) 18, 414
PkrI GCNGC 2 cut(s) 225, 469
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp6I CCWGG 2 cut(s) 155, 279
PspEI GGTNACC 2 cut(s) 46, 479
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 2 cut(s) 155, 279
PspN4I GGNNCC 2 cut(s) 267, 330
PspPI GGNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 370
PvuII CAGCTG 2 cut(s) 169, 226
RsaI GTAC 2 cut(s) 131, 175
RsaNI GTAC 2 cut(s) 130, 174
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 2 cut(s) 224, 468
Sau3AI GATC 2 cut(s) 9, 462
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 30
SduI GDGCHC 1 cut(s) 107
SetI ASST 9 cut(s) 27, 150, 158, 171, 184, 228, 282, 369, 497
SinI GGWCC 1 cut(s) 265
SmaI CCCGGG 2 cut(s) 208, 408
SmiMI CAYNNNNRTG 1 cut(s) 408
SsiI CCGC 5 cut(s) 107, 119, 284, 468, 484
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 265, 320
TaqII GACCGA 1 cut(s) 350
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 2 cut(s) 18, 414
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseFI GTSAC 3 cut(s) 46, 259, 479
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 3 cut(s) 46, 259, 479
TspDTI ATGAA 1 cut(s) 102
TspMI CCCGGG 2 cut(s) 206, 406
VpaK11BI GGWCC 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmaI CCCGGG 2 cut(s) 206, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.