Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015259

Physical Location & Seq

Genomic Coordinates Forward (+)

22434864 .. 22436053

Gene Structure 1190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGGAAGTTAAGAGGAATCAAAATTAGAAGACCGATTAAACAAATCTCAAGATGGATCCTCCGGAGAATTAAGATTCGTCGTTCAAGATACACCCGGTTAAGCCCAAACCGCCCGGTTTGCAAGCCGAGAGCCATCACAAAACTCATAAGTTGGGGTCGAAGTCTCACATCCCACAGCGCCAGGTTTATTGGGTCTAAATGCTCCAATTCAGGGTACATACCAATTGGTCAAGAACCCATTCGAGAAAAGCCCGACCCGGTTCCGAAAGGTCACTCGGCGGTTTACATCGGTAAAAAAGACGGCGACTTTCAGAGAGTTTTGGTGCCTATCGTTTACTTTAACCATCCTCTGTTTGGTGAGCTTCTTAGAGAGGCTGAAGAAGAATTTGGGTTTTCTCAAGAAGGTGGAATCACTATCCCTTGTCCTTACTCAGATTTCAAACGGGTCCAAACCCGAATTGAATCCGGGTCGGGTTTCTGTAAATTTCCCTGGAGCCGGCGGTGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:1900055 GO:1900057 GO:1900140 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

170

Amino Acids

19.78

Weight (kDa)

10.83

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	83 - 151	3.2e-20	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45210 AT3G60690
fragaria_vesca	FvH4_7g11280 FvH4_7g11280
malus_domestica	MD02G1205700.v1.1 MD07G1117400.v1.1
prunus_persica	Prupe.2G140600_v2.0.a1
pyrus_communis	pycom07g10730
rosa_chinensis	RchiOBHm_Chr1g0349431
rosa_laevigata	RLG00000028549
rosa_multiflora	Rmu_sc0002495.1_g000006
rosa_rugosa	Rorug01G0203800
rosa_samantha	Rh1AG221000 Rh1BG187200 Rh1DG216400
rosa_wichuraiana	Rw1G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	3 cut(s)	112, 281, 502
AclWI	GGATC	2 cut(s)	52, 65
AcsI	RAATTY	2 cut(s)	386, 485
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	213, 356, 498
AgsI	TTSAA	3 cut(s)	87, 442, 464
AjnI	CCWGG	2 cut(s)	182, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	52, 65
Aor13HI	TCCGGA	1 cut(s)	63
ApoI	RAATTY	2 cut(s)	386, 485
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	448
AsuC2I	CCSGG	4 cut(s)	97, 116, 260, 469
AsuHPI	GGTGA	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	448
BamHI	GGATCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	37
BccI	CCATC	3 cut(s)	48, 143, 354
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	2 cut(s)	184, 493
BcnI	CCSGG	4 cut(s)	97, 116, 260, 469
BcoDI	GTCTC	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	183
Bme1390I	CCNGG	6 cut(s)	97, 116, 184, 260, 469, 493
Bme18I	GGWCC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	5 cut(s)	59, 264, 327, 449, 497
BmrFI	CCNGG	6 cut(s)	97, 116, 184, 260, 469, 493
BpiI	GAAGAC	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	34, 384
BpuMI	CCSGG	4 cut(s)	97, 116, 260, 469
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 356, 498
Bse118I	RCCGGY	1 cut(s)	498
BseAI	TCCGGA	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	184, 493
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	2 cut(s)	170, 346
BseLI	CCNNNNNNNGG	3 cut(s)	213, 356, 498
BseMII	CTCAG	1 cut(s)	447
BshNI	GGYRCC	1 cut(s)	325
BsiSI	CCGG	6 cut(s)	64, 97, 116, 260, 468, 499
BslI	CCNNNNNNNGG	3 cut(s)	213, 356, 498
BsmAI	GTCTC	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	3 cut(s)	112, 281, 502
BspCNI	CTCAG	1 cut(s)	446
BspEI	TCCGGA	1 cut(s)	63
BspLI	GGNNCC	5 cut(s)	59, 264, 327, 449, 497
BspPI	GGATC	2 cut(s)	52, 65
BspT107I	GGYRCC	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	498
BssAI	RCCGGY	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	184, 493
BstC8I	GCNNGC	2 cut(s)	125, 500
BstDEI	CTNAG	2 cut(s)	368, 433
BstF5I	GGATG	2 cut(s)	170, 346
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 120
BstNI	CCWGG	2 cut(s)	184, 493
BstSCI	CCNGG	6 cut(s)	95, 114, 182, 258, 467, 491
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	170, 346
Cac8I	GCNNGC	2 cut(s)	125, 500
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	217
CviJI	RGCY	7 cut(s)	105, 127, 134, 253, 364, 377, 498
CviKI_1	RGCY	7 cut(s)	105, 127, 134, 253, 364, 377, 498
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	368, 433
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	182, 491
FaiI	YATR	2 cut(s)	149, 221
FokI	GGATG	2 cut(s)	157, 333
GlaI	GCGC	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	183
HapII	CCGG	6 cut(s)	64, 97, 116, 260, 468, 499
HhaI	GCGC	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	4 cut(s)	18, 76, 411, 464
HpaII	CCGG	6 cut(s)	64, 97, 116, 260, 468, 499
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	2 cut(s)	286, 337
Hpy188I	TCNGA	3 cut(s)	267, 315, 436
Hpy188III	TCNNGA	6 cut(s)	51, 64, 87, 233, 245, 401
Hpy8I	GTNNAC	2 cut(s)	286, 337
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	1 cut(s)	398
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 120
HpyF3I	CTNAG	2 cut(s)	368, 433
HspAI	GCGC	1 cut(s)	180
Kpn2I	TCCGGA	1 cut(s)	63
KroI	GCCGGC	1 cut(s)	498
KroNI	GCCGGC	1 cut(s)	500
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	2 cut(s)	209, 495
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	3 cut(s)	42, 392, 395
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	57
MluCI	AATT	7 cut(s)	24, 69, 208, 225, 386, 459, 485
MnlI	CCTC	4 cut(s)	8, 71, 360, 367
MroI	TCCGGA	1 cut(s)	63
MroNI	GCCGGC	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	5 cut(s)	11, 39, 72, 101, 342
MspI	CCGG	6 cut(s)	64, 97, 116, 260, 468, 499
MspR9I	CCNGG	6 cut(s)	97, 116, 184, 260, 469, 493
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	2 cut(s)	184, 493
MwoI	GCNNNNNNNGC	2 cut(s)	111, 120
NaeI	GCCGGC	1 cut(s)	500
NciI	CCSGG	4 cut(s)	97, 116, 260, 469
NdeII	GATC	1 cut(s)	57
NgoMIV	GCCGGC	1 cut(s)	498
NlaIV	GGNNCC	5 cut(s)	59, 264, 327, 449, 497
NmeAIII	GCCGAG	2 cut(s)	153, 257
NmuCI	GTSAC	1 cut(s)	272
PdiI	GCCGGC	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	4 cut(s)	18, 76, 411, 464
Psp6I	CCWGG	2 cut(s)	182, 491
PspGI	CCWGG	2 cut(s)	182, 491
PspN4I	GGNNCC	5 cut(s)	59, 264, 327, 449, 497
PspPI	GGNCC	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	5 cut(s)	11, 39, 72, 101, 342
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	1 cut(s)	448
ScrFI	CCNGG	6 cut(s)	97, 116, 184, 260, 469, 493
SetI	ASST	4 cut(s)	188, 274, 366, 409
SinI	GGWCC	1 cut(s)	448
SmlI	CTYRAG	2 cut(s)	49, 399
SmoI	CTYRAG	2 cut(s)	49, 399
Sse9I	AATT	7 cut(s)	24, 69, 208, 225, 386, 459, 485
SsiI	CCGC	3 cut(s)	112, 281, 502
StyD4I	CCNGG	6 cut(s)	95, 114, 182, 258, 467, 491
TaqI	TCGA	2 cut(s)	160, 244
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	7 cut(s)	24, 69, 208, 225, 386, 459, 485
TfiI	GAWTC	4 cut(s)	18, 76, 411, 464
Tru1I	TTAA	5 cut(s)	11, 39, 72, 101, 342
Tru9I	TTAA	5 cut(s)	11, 39, 72, 101, 342
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	386, 485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.